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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064365 ID=TCONS_00064365|Name=TCONS_00064365|organism=Clytia hemisphaerica|type=transcript|length=2098bpRun BLAST on NCBI protein sequence of TCONS_00064365-protein >TCONS_00064365-protein ID=TCONS_00064365-protein|Name=TCONS_00064365-protein|organism=Clytia hemisphaerica|type=polypeptide|length=630bp MATKSSKARDPNIKLLLTPEAERKKLESRKGSSRKERRRPSLTDHNRNKRRun BLAST on NCBI transcript from alignment at scaffold_412:20816..32156+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064365 ID=TCONS_00064365|Name=TCONS_00064365|organism=Clytia hemisphaerica|type=transcript|length=11341bp|location=Sequence derived from alignment at scaffold_412:20816..32156+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_412:20816..32156+ >TCONS_00064365 ID=TCONS_00064365|Name=TCONS_00064365|organism=Clytia hemisphaerica|type=CDS|length=15120bp|location=Sequence derived from alignment at scaffold_412:20816..32156+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00064365 vs. Swiss-Prot (Human)
Match: NSUN7 (Putative methyltransferase NSUN7 OS=Homo sapiens GN=NSUN7 PE=2 SV=4) HSP 1 Score: 159.844 bits (403), Expect = 4.454e-41 Identity = 149/543 (27.44%), Postives = 253/543 (46.59%), Query Frame = 1
Query: 349 NKREGEILDDNSKRPISREERA-----QIKFGHTIYNKAANLFELLKDNTVVQP---KIG---------FENEFEKRRAYSLAFAAKRFEGILKDVLLDSTFYSSYFKLETYHHSKVMVMLLDFYDHGFRFSESVRKKIEVDSKNHLDHIHDIQKAFFQHKVKLCSAFARNRIKACALSLDAMLPAEVKERNEHGSRHSLFTWINPFVADAHCIINQLKSDGFVYKESLEELSGSEDNGLYFSYEEDGANTDLLEFPAWCKDEVYNHQLALDSSLVPMSKPRYLMTKACRRAHDEVCRVQQKSHHHAVLPATDGKENHDMVNGGCDVVLTHPETGSLAAYLCSFLGTNKRLFIFGCHGDKAVEVEKNLKN----IGISNYVLLSEDFKNIVGIDDRLSSVKLIVCNPPCSNSGVVNMVDFIIQEGADTA--SSLSKEATPV-KIRGLAEEQASTIRITFSFPNVQSIVYCSFSTFPEENEKLVQRVLQSQQ--NSKNRFEM---CVVLEDMRDIFTSSQDGDFLRVEPSYKMDGFFVTLLKRK 1890
N+ + EI+ + P+S + + + + ++Y AAN+F+ ++ Q K G E++ +R +Y LAF+A +++ IL+ +L+DS + S + + S ++VML DF D F+ ++ D++ + + +++ K+KL +A AR RIK ALS+ +LP V+++ S L+ WIN + N LK G+ +S+ + D+ + + D D+L FP+ K+++ N L D L+ K R L H+V + ++ MVN G ++H S L N +F C G ++ + +LK IG N +L E F NI D RL VK+I+ P CS GV N V+FI+ E DT S+ V K+ LA++Q + F Q++VYC+ S FPEENE +V++ L+ Q N + + + L +++I S+ F R+EPS +G F+++L R+
Sbjct: 12 NEEDPEIISQLTSLPLSGGKSSAGVPEKTGYPDSVYVMAANIFQGIRIEKSAQKVLIKYGNEPLRSLSESEDQSFQRLSYELAFSALKYQDILETILIDSCIFPST-TIPDHLSSLIIVMLYDFQDRKFQ------TRVLSDNEEPISEVQEVENLLNSFKIKLAAALARCRIKHDALSIYHILPETVRKQELRASTLPLYAWINTCKISPEEVYNNLKRRGYNKVKSVLHI----DDKV---FAVDQHCYDVLIFPSHLKNDLINIDLFKDYKLIFQDKSRSLAV-------------------HSVKALLNMDDDVLMVNTGSWYTVSH----------MSILTNNNTSKVFVC-GVQSQAKDPDLKTLFTKIGCKNIEILHEKFINIESKDHRLQKVKVILLLPRCSGLGVSNPVEFILNEHEDTEFLKDHSQGGISVDKLHVLAQQQYEQLTHAMKFTKAQAVVYCTCSVFPEENEAVVKKALEFQDLGNKGQPYRLSPPVLPLCSLKEIQLSTD--KFFRMEPSEITNGCFLSILTRE 508 The following BLAST results are available for this feature:
BLAST of TCONS_00064365 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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