TCONS_00064405 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064405
Unique NameTCONS_00064405
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length663

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064405 ID=TCONS_00064405|Name=TCONS_00064405|organism=Clytia hemisphaerica|type=transcript|length=663bp
TAAAGGTGTATTTGCAACGAAAGACTTTTCAGTTGGTGATTTCTTGATGG
AATATGCtgGTGAACGAATCTTGTATGAAGAGGCAGTAGAGAGAGAAAGG
AGATACGAGAAAGATGGAATGGGATGTTTCATCTATTTTGGAATTGAAGG
AAAAAATGGGACATTTTGTCTGGATGCGACTTGTTCAAAGCAACTTGGAA
AATTTGTCAACGACACAGTTCACAAAAGGGCAAATGCCTACACCAAAAAG
ATTCACACTGAAACTGGCATCTTTGTTTATTTGCAAAGACTGATATAGAA
GTTGGGACTGAAATTAGATACGATTATGGAGACGCTGATGTTTTTTGTGC
ATGGCGATCAAAGGATGAAAATCTTGAGCCCATTAAAAAATCTTTGGTAA
GTTTCATTTGTACTTGAAATGTAATTTTTAAGGtcctaaaagtttttttt
cacaatttacccCTTCACCCATTTTTGAATCAAAATATCCTGTAACTACT
AAATTGAATTAAGAAAAACTGTTCCTGCAATCTGTTAATTAAATCCCCAT
CTAAATTTGTATTAACAAAGCAGGATAACTTTAGTGGTGAAGAAGTAAAG
CTCGAATCTCATTGGctatccattttttcaaaaatccaggctATTTATTA
TCGAAGATTCAGG
Run BLAST on NCBI

transcript from alignment at scaffold_413:81604..84669-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064405 ID=TCONS_00064405|Name=TCONS_00064405|organism=Clytia hemisphaerica|type=transcript|length=3066bp|location=Sequence derived from alignment at scaffold_413:81604..84669- (Clytia hemisphaerica)
TAAAGGTGTATTTGCAACGAAAGACTTTTCAGTTGGTGATTTCTTGATGG
AATATGCTGGTAAATCTATTTTTTTAATAAGCATTAGCCAAGTCCTTTGA
AGTGAATTAAAGAAATATCAATATCAAGTTCAATTTTTCAGTTCAGTGGA
TAAAGCAGAGTTGAAGCAAACCTGAGACAATAGAATCTGAAGTCCACCAG
AGACAGACATTATCTTATCGTATATCTTACAGAACATACTTTCATAGAAA
CTTATGTTTCGTTGAATAATTTTAAATTATAGTAACTCTTAAAACCAACT
TTCATAGATTTTTCATTTCTTTCATCATTTTTCAGAATAAAATTTCCTGG
TTTTCACCCGAAACCCTGAAAATTAGCTCCAATAAAATTTGATGTCCTAT
AGCTAGAGAAACTTTGCTTTCAGTGAGATGATAATGTCTATATACTAAGC
CAGCATGAACATTATTTAGGTGAACGAATCTTGTATGAAGAGGCAGTAGA
GAGAGAAAGGAGATACGAGAAAGATGGAATGGGATGTTTCATCTATTTTG
GAATTGAAGGAAAAAATGGGACATTTTGGTAAGCAAGTGTTCCTTAAGCA
CGCCTCTAGAGATACCATGTTTCAGTTATATTAGAATGTAGCAGTGTCAG
TATTTATGTGTATATCCATGAAAAATTTTAATTCTTTGGGTAGATGTTTA
GTATAAGGAGGGGGAGAAAGTGCCTACTTCGCAACAATAAAAAAGAACGG
CAAATTTCGCCATCCACAACCCCTACCGCTTTCGTTTCGCCACCCTAGAG
ATTCACCCCTCTTTGTTTGTGACCCTCTTTAACTACATGTTGTTTAAAGT
TACACATTTTATTTAAAAAAAATATATATAAACAATACATGTGAAATAGG
CACTTCCCCGATCTGAGTAAAAGTGTATAATCCATAGTAGAAGCTTGGAG
CAAGGACGAATGATCAGAGCATTACTCCCTGTTCTTTGAATTAGAATTGG
GGCCGAAGATATTTTCAATGTGAATTAAGATTAGCACAAGAGGTTTCATG
GTCTTAGTTATTGTTGTCTTGATGATCAACTTTTAACCTTTATGTTTCAT
TTTCATAGTCTGGATGCGACTTGTTCAAAGCAACTTGGAAAGTAAGAATT
ACTTTTATAAACTAATTGTATAATTGTGCTCTGACAAGCTTTCAAGCATT
CAAGAATTGTAAATCGTACTTACACTAAATGCTTGTAAAGTTGCAGAAAT
CTAAGTACCCTTTTTATGACTGGTATTGGTTTACCAAACCGCTCAATTCC
TAATTCTTGAATCTAATTTCTATTTAAGATTTGTCAACGACACAGTTCAC
AAAAGGGCAAATGCCTACACCAAAAAGATTCACACTGAAACTGGCATCTT
TGTTTATTTGCAAAGACTGATATAGAAGTTGGGACTGAAATTAGGTAAGT
TTTGATAAATTAACATAGCGCTCCGCAACCCATACGTCGTAATTATTACT
TTTTACCTTTTTTGACATTTGTACGAGTTGCAATCCCACAATTCAACGCG
GCTCAATTAAAGATACGTGCAAGCTGTTACATATCCTTTGTCAAACGATG
CAATTAACGTGCAAAAGAGATTAACGAAAAGGTTGATGGGATTGGAACTC
GTACAAACACATCGAGAGTAATGATTATGTCAAAAATAAAATATATTTTT
AGATTCAGCGCGGTGCGCNTTGATGGGATTGGAACTCGTACAAACACATC
GAGAGTAATGATTATGTCAAAAATAAAATATATTTTTAGATTCAGCGCGG
TGCGCTATTGCAGTTAAGATGAATTCATTTTTAAAGATTATCAATAGAAT
CCTACCCCAGGAAGATAGGAGGTAGAGAAAAAGATTTTCGTGCAAGGGGG
GAGTGAAAATTTCAAGCTTGGTGGGGGAAGAAAGGGAAATGAGGGATATC
CAGGAATTCCATAATATTTTCCTTGATTTGTTTGCATCTGGGAGTACCTT
TAAGAAAACACTTGACTTACTATTTTGACTGTAAGGAACTGCTACTATGC
TAGTATTAGAACTAATACATAAAAATATTGTGATTTCTCAAAACAAGTGG
GTCTTGCAAATGGAATTGCAGTTCCAATGCTCCAGTGGATTTTAACTTTA
TCTTCTTTCCCAGATACGATTATGGAGACGCTGATGTTTTTTGTGCATGG
CGATCAAAGGTAATGTGAAAATAATAATTATAATAGTCAACTTGAGGTTT
CATTTTCCATATCTGTTTGTACACCGCGATAATCGTTGTTATTTAAAGGT
TTTCTTTTGATTGAAGGGTCTGGCGATGCTGAGTCTAAAATATTTCATAA
ACGCTCACGCATGTGCACTAGTCATCAGTATGCGCATGTGTATGGAAAAA
CAAGTGCAACAATATTAAAAAAAGCTTTTGAAATGATAACGTATATTTAA
AACACATTTCTCACACAAGGAGCCTTTATTGAATGTTTTTATGCATACAA
TAAATAGAACGTTATCTATATATAGATCAAAACATTCGATTGCAAACTTG
TTTGAAATCAACTTTGCTATATTTTTGTTTATAAAAGCAATAGAATGTGA
GGTCACAGATGTAACAACTTTCGATCTTTCATTTTGCTTTGAGGTTATCA
TTGCGTAAAAAAGTAGCTTTTATTTATCTGACTCAGCATCGAGGTGCCAC
CCTTTATGTCGCTATCTTTTACCCCCAACTATTATCTTTATAGACATTGA
AAACTCTTTTTTTAAGGATGAAAATCTTGAGCCCATTAAAAAATCTTTGG
TAAGTTTCATTTGTACTTGAAATGTAATTTTTAAGGTCCTAAAAGTTTTT
TTTCACAATTTACCCCTTCACCCATTTTTGAATCAAAATATCCTGTAACT
ACTAAATTGAATTAAGAAAAACTGTTCCTGCAATCTGTTAATTAAATCCC
CATCTAAATTTGTATTAACAAAGCAGGATAACTTTAGTGGTGAAGAAGTA
AAGCTCGAATCTCATTGGCTATCCATTTTTTCAAAAATCCAGGCTATTTA
TTATCGAAGATTCAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040384XLOC_040384Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064405-exon-scaffold_413-1575043694:84611..84669TCONS_00064405-exon-scaffold_413-1575043694:84611..84669Clytia hemisphaericaexon
TCONS_00064405-exon-scaffold_413-1575043694:84092..84200TCONS_00064405-exon-scaffold_413-1575043694:84092..84200Clytia hemisphaericaexon
TCONS_00064405-exon-scaffold_413-1575043694:83529..83561TCONS_00064405-exon-scaffold_413-1575043694:83529..83561Clytia hemisphaericaexon
TCONS_00064405-exon-scaffold_413-1575043694:83226..83341TCONS_00064405-exon-scaffold_413-1575043694:83226..83341Clytia hemisphaericaexon
TCONS_00064405-exon-scaffold_413-1575043694:82461..82506TCONS_00064405-exon-scaffold_413-1575043694:82461..82506Clytia hemisphaericaexon
TCONS_00064405-exon-scaffold_413-1575043694:81604..81903TCONS_00064405-exon-scaffold_413-1575043694:81604..81903Clytia hemisphaericaexon
TCONS_00064405-exon-scaffold_413-1510915933:84611..84669TCONS_00064405-exon-scaffold_413-1510915933:84611..84669Clytia hemisphaericaexon
TCONS_00064405-exon-scaffold_413-1510915933:84092..84200TCONS_00064405-exon-scaffold_413-1510915933:84092..84200Clytia hemisphaericaexon
TCONS_00064405-exon-scaffold_413-1510915933:83529..83561TCONS_00064405-exon-scaffold_413-1510915933:83529..83561Clytia hemisphaericaexon
TCONS_00064405-exon-scaffold_413-1510915933:83226..83341TCONS_00064405-exon-scaffold_413-1510915933:83226..83341Clytia hemisphaericaexon
TCONS_00064405-exon-scaffold_413-1510915933:82461..82506TCONS_00064405-exon-scaffold_413-1510915933:82461..82506Clytia hemisphaericaexon
TCONS_00064405-exon-scaffold_413-1510915933:81604..81903TCONS_00064405-exon-scaffold_413-1510915933:81604..81903Clytia hemisphaericaexon
TCONS_00064405-exon-scaffold_413-1491911889:84611..84669TCONS_00064405-exon-scaffold_413-1491911889:84611..84669Clytia hemisphaericaexon
TCONS_00064405-exon-scaffold_413-1491911889:84092..84200TCONS_00064405-exon-scaffold_413-1491911889:84092..84200Clytia hemisphaericaexon
TCONS_00064405-exon-scaffold_413-1491911889:83529..83561TCONS_00064405-exon-scaffold_413-1491911889:83529..83561Clytia hemisphaericaexon
TCONS_00064405-exon-scaffold_413-1491911889:83226..83341TCONS_00064405-exon-scaffold_413-1491911889:83226..83341Clytia hemisphaericaexon
TCONS_00064405-exon-scaffold_413-1491911889:82461..82506TCONS_00064405-exon-scaffold_413-1491911889:82461..82506Clytia hemisphaericaexon
TCONS_00064405-exon-scaffold_413-1491911889:81604..81903TCONS_00064405-exon-scaffold_413-1491911889:81604..81903Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_413supercontigscaffold_413:81604..84669 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0781448	0	0	0	2.6862	3.38762	1.63367	3.76941	1.18015	1.00699	0.699873	0	0.685506	0.766136	0.0443732	0	0	0	0	0.0869264	0	0	0	0	6.87412	6.77189	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064405 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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