TCONS_00064410 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064410
Unique NameTCONS_00064410
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length563

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064410 ID=TCONS_00064410|Name=TCONS_00064410|organism=Clytia hemisphaerica|type=transcript|length=563bp
ATTTTAAGTgcttaagtaaagaaactaagcatATTAAAACCATGATAAAC
ATTAAATAGAAGATTAACTTGTACCAAACCTATCACTTTTTTTCCAAGAC
CGAAAGACGAGTCTATGAGAGGGAGGTGGAGCTGAGGAGCACGCGCGTTG
AAGGGTGAATAGAGGATAGTATAGGCTAAACTCTCTTCCTTCCCTGGGAT
GAAAAGAGCTCACTTTTCCCTCGCAGAAACCCGCCGCTCAAACGGTTTGG
TTCCAATTAACTTGAGCTTCCTTTAGTCAAAAAGAGGTGATCCGGCGCGC
ACAGAGCCTCAGACAGGCCAGCCCGAAACTAACAAAATATATCAGGGTAA
GAGATGGTAAACCGATCCTATTGTATATATGTTAGGATAGAAGAAAATAC
TATCTAGTAAAATGATATTCAAAATACTATCCAGGCGGTCCGTCCAGGGA
TGTGGAAAAAGGAGCGTTTGTGAAGGTTTCTTTGTTAGTGTACCTTACTA
TTTTAATATTGTTACGTCGAGAAAGGTTTCTTGTCCAaggtcatttcaaa
aaatatacacGAC
Run BLAST on NCBI

transcript from alignment at scaffold_413:163155..163717

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064410 ID=TCONS_00064410|Name=TCONS_00064410|organism=Clytia hemisphaerica|type=transcript|length=563bp|location=Sequence derived from alignment at scaffold_413:163155..163717 (Clytia hemisphaerica)
GTCgtgtatattttttgaaatgacctTGGACAAGAAACCTTTCTCGACGT
AACAATATTAAAATAGTAAGGTACACTAACAAAGAAACCTTCACAAACGC
TCCTTTTTCCACATCCCTGGACGGACCGCCTGGATAGTATTTTGAATATC
ATTTTACTAGATAGTATTTTCTTCTATCCTAACATATATACAATAGGATC
GGTTTACCATCTCTTACCCTGATATATTTTGTTAGTTTCGGGCTGGCCTG
TCTGAGGCTCTGTGCGCGCCGGATCACCTCTTTTTGACTAAAGGAAGCTC
AAGTTAATTGGAACCAAACCGTTTGAGCGGCGGGTTTCTGCGAGGGAAAA
GTGAGCTCTTTTCATCCCAGGGAAGGAAGAGAGTTTAGCCTATACTATCC
TCTATTCACCCTTCAACGCGCGTGCTCCTCAGCTCCACCTCCCTCTCATA
GACTCGTCTTTCGGTCTTGGAAAAAAAGTGATAGGTTTGGTACAAGTTAA
TCTTCTATTTAATGTTTATCATGGTTTTAATatgcttagtttctttactt
aagcACTTAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040388XLOC_040388Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064410-exon-scaffold_413-1491911889:163155..163717TCONS_00064410-exon-scaffold_413-1491911889:163155..163717Clytia hemisphaericaexon
TCONS_00064410-exon-scaffold_413-1510915933:163155..163717TCONS_00064410-exon-scaffold_413-1510915933:163155..163717Clytia hemisphaericaexon
TCONS_00064410-exon-scaffold_413-1575043694:163155..163717TCONS_00064410-exon-scaffold_413-1575043694:163155..163717Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_413supercontigscaffold_413:163155..163717 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.111016	0	0	0.515393	0.120626	0.506719	1.56913	0.203072	0.533966	0.333265	0.484538	0	0	0	0	0	0	0	0	0	0	0.430405	0.864285	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064410 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top