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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064439 ID=TCONS_00064439|Name=TCONS_00064439|organism=Clytia hemisphaerica|type=transcript|length=766bp
GAAATAgctactttttttcaaatatagctaTCTATTCTAGAATTGATAGT
TTCAACTTCTCAACATATCGCACTCTTTGATCTATTGTTTTTATAATTGG
TTACAAAGGAGTGCCGCTCAGACATTTCTTTCCTTCATTCGTCTCTTATA
TCGCCATGGAAACGAACAATTAACCCAATTAGTTTTTTCTTCTCCTCTCT
TATCATCACGTTAACAAAAGAGATAATTGTCTCTTTAATAGGAGAAggat
cttttattttttaaagagacgACTTAATAGAATACTCTCTGTACTAGCTG
GTAATTATGTCGCTCTGACAACCCTAttgtattttgatttaaaagaacGG
CTTAATAAATAAGCATTCTCTGTTAATAAGAAATACATTGCTTTTAAAGA
GTTataacattttgatattttgtttagaataaaaagttgtttttatagAT
AACTGATACAAAGAGGGTGTGGTGGTCAACTCCGACAACATAAACGGGGG
TGATGAGAATTACACATGACAACTTCGATACCAACAGATGGGTAGTGACG
AAGTGGTGGAGGATAAGACAAAGGTTGACGTGGAGGATTAAGTGGACGAA
GTGGTGGAGGATAAGACAAAGGTTGACGTGGAGGATTAAGTGGTCGAGGC
CAGCACattactgaaaaagaaaaacggaTTGACATGTTTTAATCGATAAC
AAAAGGAGTTAATTCGAGGGTGGACACTCAAAGGCGGAAATCTGCCTTTT
TCCGTGCGAATTGCAG Run BLAST on NCBI transcript from alignment at scaffold_415:346003..350535+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064439 ID=TCONS_00064439|Name=TCONS_00064439|organism=Clytia hemisphaerica|type=transcript|length=4533bp|location=Sequence derived from alignment at scaffold_415:346003..350535+ (Clytia hemisphaerica)
GAAATAgctactttttttcaaatatagctaTCTATTCTAGAATTGATAGT
TTCAACTTCTCAACATATCGCACTCTTTGATCTATTGTTTTTATAATTGG
TTACAAAGGAGTGCCGCTCAGACATTTCTTTCCTTCATTCGTCTCTTATA
TCGCCATGGAAACGAACAATTAACCCAATTAGTTTTTTCTTCTCCTCTCT
TATCATCACGTTAACAAAAGAGATAATTGTCTCTTTAATAGGAGAAggat
cttttattttttaaagagacgACTTAATAGAATACTCTCTGTACTAGCTG
GTAATTATGTCGCTCTGACAACCCTAttgtattttgatttaaaagaacGG
CTTAATAAATAAGCATTCTCTGTTAATAAGAAATACATTGCTTTTAAAGA
GTTataacattttgatattttgtttagaataaaaagttgtttttatagAT
AACTGATACAAAGAGGGTGTGGTGGTCAACTCCGACAACATAAACGGGGG
TGATGAGAATTACACATGACAACTTCGATACCAACAGGTAAAGTATTTTA
CCAACAGATAAAGTATTTTACCAACAGATAAAGTAGCTCTTCGAATGCCC
CTTTTTTGAATTTAACCCCCTGAAAAATGGCGAATTTTCCCAGATTGCAT
GAATGTTTGAATCGCGAAAAAAAACTAGGGTGAATGTCTGAAAATTGGTC
CTCTGCGTGATGCGTGAAATGCGAATATTGTTGGCGTGATTGCGTGAAAT
GACGATTTTTCCCCGATTTCGTGTATgcatgaattgcaaaaaaagcGTGA
ATGAGTGAACATTGGTTAACTGGGGGCCTGTTAAAGAAAAGACACTCTTA
tgttttggatttattttagaatGATCTTCAAGATTCTTCTGAAATTTGTC
ATTcacaaaaaattgtattttttttttatttNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATTTTAG
AATGATCTTCAAGATTCTTCTGAAATTTGTCATTcacaaaaaattgtatt
ttttttttattttttcttgggGGGGGGGTAGTCAGCTCCCACAGAGTAAG
GTTCCTGAACGAAAATCTTCAATGACTTTGAATTTTGTCATGAAATTTTG
CCAGTGTGTGGGGAATGTGGATTGACACTTTCTGacaaaattttgtcatt
tctaatgacgtcatcatgacATGATGATGtcaacaaattttgaaaatgtc
aagAAAGGACCCCCGTCGAACTTTTTTTCACcttcataattttctttgaa
attttgcatataAACTCAACTTAATAAATGATTTTTAGATGTGTCAATTT
TTTCTGCCACCTGCCAGATTCGTGTATTTTGCAGTATTtataaccaaata
caaaatatcTAGGAATTAGAGGCTAAAggcttttctgattttttgtgata
aaaatgaagaaacaatGTTAAGCCAAATCTGAAGCAGTATTAAACTTAAA
AAGAAGCTAAATGTCTCAATAAATTCTTTATTATATTAACCCTTCGTGCA
TCTTTGGGGGTCTATATTTGACAACTTTAGAAATACTTATTCAAACGACT
TGCAATTTTGCCAGTGTGAACAAAATATTTATCGTCAACTCTGAGCAAAA
TTTCgccatcatttatgacgtcattgcGTCACAAGGACGTCACCATCCTT
TAAAAAGGCTGAAAATAGGACAACCctcaaacttttttcacattcatatt
ttttactcaaattttttGTTGCTACTCCTTAAGAGATTAATTTTGAAGAC
ATATAATTTTGGGGATGAAGGTAAATTCTTTTGACCTGCTAtatgtgtgt
attttacaggcCCAAAAATGCATGCTCTAATTGCCAAATTTAGGCCCAAA
ATTTATATCTCTGGATAGAAATAAggtattgacttgaaatttaaaccAGC
GACAAGTAGTGATGATAGAAGCTTAATGTCAAATTCTCAGTGAAATTGGA
CAGGTGGTTTTCCAGAAAGTGAGCATTTTGGGTAAAATACTGAATGGTCC
ATGAAATACGGCCAACGTAACCGATTGGCTTGAAATTTTGTATATCGTCT
GGTCAAGACCTATCATAGGTTAAAATTTCAAGTCAAAAGCTTTAGTAGCT
CTTTTATTCTGGAAGGGGGTCAACGTGTATATCACAGACCGGTCAGTAAA
GTACCAAATACCCATGGGACCAAACTTTTTTCGTAAGTAAATGTTTTTAT
TCGACAAATCAGCTATCAGAAACAAGTTTAACCCGAAATAACCCAATTTG
TGATCTTAACAAATTTGACATTCTGGTCTGTACAGTAGCAACAAAACAGG
TGACTGACCTAGAATATTGATATTTATAATATTATTTATATATGATATTT
TCCAGGATATTTTGTGTCTTTCGGGTTTTTTCATATGTATTACACCCCTG
AATCAGTGACCCGGTCAGATACGCCCCAGTGAATAACCCGGTGAAAAATA
TGCTCTATAATAGCCCCAGTGAAGAAATGAAGCTGAGTGATCTTaaatta
tacacccctgtctcactgaccTGGTGGAAATTTCATGGTCAGCGGGAATA
AAATTGAGAACAAATATCCCAGTGGGGATTAAGAATCCCTTTCAATTTTA
TAACTGGGATAtttatttccattgttttcagtccaaaaaatccagtgggg
acgGCAAATTCAGACCAAAACTTTACAGTGGAGATAGTAATACTCCAGTT
TTCCTAATGGGGACGAAATTTGAGGAAATTTCCTCAACCGGCGACGAATT
TTGAGCTCATTTTCTCAGTGGCGcgggggtcccaccgggtctgttaCACA
GGGGTGTACTTATTTTGGTAGACTTTTCCTGTGGTACTGTAAGGGGTCCC
ATCGAAAAATAACCTCAACCATGTCTTGCGAAGAATGTTCGGAAAGTTAA
ATGTAGGAtgctaaaaaaacttttaaagatgatataaagtaaaaaatata
atgGAATTTGTacaatattttagtttttttaaaaagcgATATAATAATCT
CACAGACCTGTTGGGTTTTTTTTTAGCCTGTGGGGATAGAAATGAGGGAA
TGAATTTTAATGGAAGTATTGATATTTCCCAATTTTTAATGTCGGGGGAT
TTTTGTGGTATTGTTTTTTTAAGCGGAATGGTAAAACTACACTGAAATTC
ACATCAGGGATAAGATTGCCCCGAAATTTGGGgcaaaaactttaattttt
tccCCCCAAGAACGATTTTTAGGCCAATTTTCCAGTAGGTTAGTGGGTAA
GGGTCCCAGCGAGTCAGTTAGAAGGGGTTGTGAGAATTGaaatactattt
acaaattatttacAATTATTCATTTAGATGGGTAGTGACGAAGTGGTGGA
GGATAAGACAAAGGTTGACGTGGAGGATTAAGTGGNCGAGTCAGTTAGAA
GGGGTTGTGAGAATTGaaatactatttacaaattatttacAATTATTCAT
TTAGATGGGTAGTGACGAAGTGGTGGAGGATAAGACAAAGGTTGACGTGG
AGGATTAAGTGGACGAAGTGGTGGAGGATAAGACAAAGGTTGACGTGGAG
GATTAAGTGGTCGAGGCCAGCACattactgaaaaagaaaaacggaTTGAC
ATGTTTTAATCGATAACAAAAGGAGTTAATTCGAGGGTGGACACTCAAAG
GCGGAAATCTGCCTTTTTCCGTGCGAATTGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064439-exon-scaffold_415-1491911889:346003..346539 | TCONS_00064439-exon-scaffold_415-1491911889:346003..346539 | Clytia hemisphaerica | exon |
| TCONS_00064439-exon-scaffold_415-1510915933:346003..346539 | TCONS_00064439-exon-scaffold_415-1510915933:346003..346539 | Clytia hemisphaerica | exon |
| TCONS_00064439-exon-scaffold_415-1575043694:346003..346539 | TCONS_00064439-exon-scaffold_415-1575043694:346003..346539 | Clytia hemisphaerica | exon |
| TCONS_00064439-exon-scaffold_415-1491911889:350307..350535 | TCONS_00064439-exon-scaffold_415-1491911889:350307..350535 | Clytia hemisphaerica | exon |
| TCONS_00064439-exon-scaffold_415-1510915933:350307..350535 | TCONS_00064439-exon-scaffold_415-1510915933:350307..350535 | Clytia hemisphaerica | exon |
| TCONS_00064439-exon-scaffold_415-1575043694:350307..350535 | TCONS_00064439-exon-scaffold_415-1575043694:350307..350535 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_415 | supercontig | scaffold_415:346003..350535 + |
Blast
The following BLAST results are available for this feature:
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