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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064469 ID=TCONS_00064469|Name=TCONS_00064469|organism=Clytia hemisphaerica|type=transcript|length=2211bp
CTTGAATTTCGTCTGGGAGGTCAAGGTTCGATCCTGGTGCTATGATTCAC
TTTTACCTTCGcccaggtcaacccatgccTTGTGAGGGGAACTGACTACC
ATTACTCtaatacaagagtatggggagtATACCAGGCGTAGCATGTGGTG
TAGTGACGATTGCTCTCTGAAAAAGTTCTAGTGATAATCCTTAGCTTTAG
AATGTTATATTCTTTTATCTTTCTAGATGCCTGAGGTTTGCTTGAAAGAC
TGTCAAGCATGGAGGGATGTTGGCCTCACGATGACTACTACAAGTAATGA
GGCATGTAAATTATTTGATGATGTGATCACCCAATATATCACATGGACGG
AGAGTCCTGATGGTATGGAAAATACCGTCGTAAAGCTACTTGAATCTGAC
TCTAATTTCATGATGGGTCAAGCTTTATCGATTGGGTTGGATATGATGGG
AACTGGTCGTGCTCTTCATTTGGATAAGGAGTTAGCGGAACAAATTAATA
AATTTGAAAGTGATTTCAATAAGTCTGAGATTACACCAcgagaaaaatta
cactgccaAAGTGTGGTGTATTTTGCTAAAGGTGAATATACGAAAGCCTG
TGAATCTTGGGAAGAGATTTTGAAAGTCNGCCAAAGTGTGGTGTATTTTG
CTAAAGGTGAATATACGAAAGCCTGTGAATCTTGGGAAGAGATTTTGAAA
GTCTATCCTAAGGACAGTTTAGCTATCAAGTTTGCGCATGATAGTTATTT
TTATCTGGGTGATTCGGTCAAGATTCGGGATAGTGTGGACAGAGTTTTAC
CATACTGGAAATCGAGTGATCCCTTATATGGTTATCTTAAAGGAATGCTC
GCCTTTGGTTTAGAAGAAACATACCGATACGAAGAAGCTCAAAAAAGTAG
CGAAGAAGCTCTCTCGTTAAACCCAACGGACTGTTGGGCTACGCATGCTA
AAGCTCATTGTTTTGAAATGACAGGACGTTTTAATCAAGGAATCGAGTTC
TTAAAAGATACTGAGAATGATTGGGCTAAAGGTCGAATGCTAGCCTGTCA
TAATTATTGGCATTGGGCGCTTTATCATATCGAACGAGGAGATTATGAAA
CAGCATTAGGAATCTATGATCATCAAGTTGAAGAGAGAAGTAAGAGCTCG
GGGGCTATGCTGGATATGGTCGACGCGGCTTCCTTACTACAAAGATTCGA
AATGCAAGGAGTCAACGTTGGTGATCGTTGGAAAGAAATTTACGAGTTGG
CTTTACCACATATTAATGATCATATCACTGTGTTTAATGATTTTCATATG
ACGATGGCTTTCCTAGGGTGTGGGAAAACGGATGTTGCGTCCCGTTATAT
GAAATCGCTGAGAGATTACTGCGCTCATCATTCTAGCTACAGTCGAGATT
TGTTTCATAAAATGGGTGTTGATCTTTGCGATGGCTTAATAGCATTTTCT
GAGGACCGATTTGATGCAGCAGTTCAGTTGTGGTACCCTTTGAAAGATGA
CGTCATCGGTATGGGTGGAAGTCATGCACAACGAGATGTTTTTGATCAAC
TTTTGTTAAACGCTTGTATCGATTCCCCGAAAAATGAAGACCGTGATTTA
GCGCAACAAATGTTGAGTGAACGCAAAAAGAAGAGAGAAAATTCTCCACT
CACGGACAGGTTAATGCAGAAACTGCTTGCGAAACATTAGTGATACGTTG
ATCAGCTAACATAATATACACTGAAATGTACTGGTCGTGTTAAAGACAAC
GGAGAGCATATTTCACTTCTTTTACTTCTTCGATTTTAGTTTCATTCATG
AGACACCCATGTCTTATTGAGTCAGCTCAGTTGTTGTGAAATCAATCGGG
GTGgctatgaaaaaataaatttcaccGGGTTTGAATTTGAATCTTAGCTC
ACTGAGGGTGAGAACTTTTAGCTGTTTCACCAGGGTGGGGTAAATgcttt
cattttaaagcattcGAGAGTTGGTTTACCTAGAATTCACTTACTATTAA
TAtgtacttttttgtttttaccaGGTTGCCCTAATTTATGCAATTTTTGA
CCGGGGTAGGACAATAAATATTCAAGTTTTGATCCGGGGGGGGGTAGAGA
ACTTTACCGCGGgttacacgtctttttttttttaagaaacacacttttaa
gaaacatgaggcttagaatgcctaaaaactaagaaacatctaagaaacat
gctgaggctga Run BLAST on NCBI transcript from alignment at scaffold_416:18140..20350- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064469 ID=TCONS_00064469|Name=TCONS_00064469|organism=Clytia hemisphaerica|type=transcript|length=2211bp|location=Sequence derived from alignment at scaffold_416:18140..20350- (Clytia hemisphaerica)
CTTGAATTTCGTCTGGGAGGTCAAGGTTCGATCCTGGTGCTATGATTCAC
TTTTACCTTCGCCCAGGTCAACCCATGCCTTGTGAGGGGAACTGACTACC
ATTACTCTAATACAAGAGTATGGGGAGTATACCAGGCGTAGCATGTGGTG
TAGTGACGATTGCTCTCTGAAAAAGTTCTAGTGATAATCCTTAGCTTTAG
AATGTTATATTCTTTTATCTTTCTAGATGCCTGAGGTTTGCTTGAAAGAC
TGTCAAGCATGGAGGGATGTTGGCCTCACGATGACTACTACAAGTAATGA
GGCATGTAAATTATTTGATGATGTGATCACCCAATATATCACATGGACGG
AGAGTCCTGATGGTATGGAAAATACCGTCGTAAAGCTACTTGAATCTGAC
TCTAATTTCATGATGGGTCAAGCTTTATCGATTGGGTTGGATATGATGGG
AACTGGTCGTGCTCTTCATTTGGATAAGGAGTTAGCGGAACAAATTAATA
AATTTGAAAGTGATTTCAATAAGTCTGAGATTACACCACGAGAAAAATTA
CACTGCCAAAGTGTGGTGTATTTTGCTAAAGGTGAATATACGAAAGCCTG
TGAATCTTGGGAAGAGATTTTGAAAGTCNGCCAAAGTGTGGTGTATTTTG
CTAAAGGTGAATATACGAAAGCCTGTGAATCTTGGGAAGAGATTTTGAAA
GTCTATCCTAAGGACAGTTTAGCTATCAAGTTTGCGCATGATAGTTATTT
TTATCTGGGTGATTCGGTCAAGATTCGGGATAGTGTGGACAGAGTTTTAC
CATACTGGAAATCGAGTGATCCCTTATATGGTTATCTTAAAGGAATGCTC
GCCTTTGGTTTAGAAGAAACATACCGATACGAAGAAGCTCAAAAAAGTAG
CGAAGAAGCTCTCTCGTTAAACCCAACGGACTGTTGGGCTACGCATGCTA
AAGCTCATTGTTTTGAAATGACAGGACGTTTTAATCAAGGAATCGAGTTC
TTAAAAGATACTGAGAATGATTGGGCTAAAGGTCGAATGCTAGCCTGTCA
TAATTATTGGCATTGGGCGCTTTATCATATCGAACGAGGAGATTATGAAA
CAGCATTAGGAATCTATGATCATCAAGTTGAAGAGAGAAGTAAGAGCTCG
GGGGCTATGCTGGATATGGTCGACGCGGCTTCCTTACTACAAAGATTCGA
AATGCAAGGAGTCAACGTTGGTGATCGTTGGAAAGAAATTTACGAGTTGG
CTTTACCACATATTAATGATCATATCACTGTGTTTAATGATTTTCATATG
ACGATGGCTTTCCTAGGGTGTGGGAAAACGGATGTTGCGTCCCGTTATAT
GAAATCGCTGAGAGATTACTGCGCTCATCATTCTAGCTACAGTCGAGATT
TGTTTCATAAAATGGGTGTTGATCTTTGCGATGGCTTAATAGCATTTTCT
GAGGACCGATTTGATGCAGCAGTTCAGTTGTGGTACCCTTTGAAAGATGA
CGTCATCGGTATGGGTGGAAGTCATGCACAACGAGATGTTTTTGATCAAC
TTTTGTTAAACGCTTGTATCGATTCCCCGAAAAATGAAGACCGTGATTTA
GCGCAACAAATGTTGAGTGAACGCAAAAAGAAGAGAGAAAATTCTCCACT
CACGGACAGGTTAATGCAGAAACTGCTTGCGAAACATTAGTGATACGTTG
ATCAGCTAACATAATATACACTGAAATGTACTGGTCGTGTTAAAGACAAC
GGAGAGCATATTTCACTTCTTTTACTTCTTCGATTTTAGTTTCATTCATG
AGACACCCATGTCTTATTGAGTCAGCTCAGTTGTTGTGAAATCAATCGGG
GTGGCTATGAAAAAATAAATTTCACCGGGTTTGAATTTGAATCTTAGCTC
ACTGAGGGTGAGAACTTTTAGCTGTTTCACCAGGGTGGGGTAAATGCTTT
CATTTTAAAGCATTCGAGAGTTGGTTTACCTAGAATTCACTTACTATTAA
TATGTACTTTTTTGTTTTTACCAGGTTGCCCTAATTTATGCAATTTTTGA
CCGGGGTAGGACAATAAATATTCAAGTTTTGATCCGGGGGGGGGTAGAGA
ACTTTACCGCGGGTTACACGTCTTTTTTTTTTTAAGAAACACACTTTTAA
GAAACATGAGGCTTAGAATGCCTAAAAACTAAGAAACATCTAAGAAACAT
GCTGAGGCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064469-exon-scaffold_416-1575043694:18140..20350 | TCONS_00064469-exon-scaffold_416-1575043694:18140..20350 | Clytia hemisphaerica | exon |
| TCONS_00064469-exon-scaffold_416-1510915933:18140..20350 | TCONS_00064469-exon-scaffold_416-1510915933:18140..20350 | Clytia hemisphaerica | exon |
| TCONS_00064469-exon-scaffold_416-1491911889:18140..20350 | TCONS_00064469-exon-scaffold_416-1491911889:18140..20350 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_416 | supercontig | scaffold_416:18140..20350 - |
Blast
BLAST of TCONS_00064469 vs. Swiss-Prot (Human)
Match: TTC38 (Tetratricopeptide repeat protein 38 OS=Homo sapiens GN=TTC38 PE=1 SV=1) HSP 1 Score: 411.764 bits (1057), Expect = 2.555e-135 Identity = 202/485 (41.65%), Postives = 296/485 (61.03%), Query Frame = 2
Query: 242 LKDCQAWRDVGLTMTTTSNEACKLFDDVITQYITWT--ESPDGMENTVVKLLESDSNFMMGQALSIGLDMMGTGRALHLDKELAEQINKFESDFNKSEITPREKLHCQSVVYFAKGEYTKACESWEEILKVXQSVVYFAKGEYTKACESWEEILKVYPKDSLAIKFAHDSYFYLGDSVKIRDSVDRVLPYWKSSDPLYGYLKGMLAFGLEETYRYEEAQKSSEEALSLNPTDCWATHAKAHCFEMTGRFNQGIEFLKDTENDWAKGRMLACHNYWHWALYHIERGDYETALGIYDHQVEERSKSSGAMLDMVDAASLLQRFEMQGVNVGDRWKEIYELALPHINDHITVFNDFHMTMAFLGCGKTDVASRYMKSLRDYCAHHSSYSRDLFHK-MGVDLCDGLIAFSEDRFDAAVQLWYPLKDDVIGMGGSHAQRDVFDQLLLNACIDSPKNEDRDLAQQMLSERKKKRENSPLTDRLMQKLLAKH 1687
L+DCQAW+D L ++TTSNEACKLFD +TQY+ WT +S G+E + KL +D F+MG A++ GL ++GTG ++ LDKEL + +T RE+LH +V FA G + K ACE WE+IL+ +P D LA+KF+HD+YFYLG ++RDSV R+ P+W PL Y+KG+ +FGL ET Y++A+K ++EALS+NPTD W+ H AH EM G+EF++ +E W MLACHNYWHWALY IE+G+YE AL IYD + +++ AMLD+VD+ S+L R +M+GV+VG RW+++ +A H DHI +FND H MA LG + +LRD + L + +G+ LC L+ + D ++L P++ ++ +GGS+AQRDVF+QLL++A ++ + +++A+ +L ER + NSPLT+RL++K H
Sbjct: 7 LRDCQAWKDARLPLSTTSNEACKLFDATLTQYVKWTNDKSLGGIEGCLSKLKAADPTFVMGHAMATGLVLIGTGSSVKLDKELDLAVKTMVEISRTQPLTRREQLHVSAVETFANGNFPK-------------------------ACELWEQILQDHPTDMLALKFSHDAYFYLGYQEQMRDSVARIYPFWTPDIPLSSYVKGIYSFGLMETNFYDQAEKLAKEALSINPTDAWSVHTVAHIHEMKAEIKDGLEFMQHSETFWKDSDMLACHNYWHWALYLIEKGEYEAALTIYDTHILPSLQANDAMLDVVDSCSMLYRLQMEGVSVGQRWQDVLPVARKHSRDHILLFNDAHFLMASLGAHDPQTTQELLTTLRDASESPGENCQHLLARDVGLPLCQALVEAEDGNPDRVLELLLPIRYRIVQLGGSNAQRDVFNQLLIHAALNCTSSVHKNVARSLLMERDALKPNSPLTERLIRKAATVH 466
The following BLAST results are available for this feature:
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