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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064480 ID=TCONS_00064480|Name=TCONS_00064480|organism=Clytia hemisphaerica|type=transcript|length=299bp
TTTTCAGGTTTGGTATGAGTGAGGGGATATGCAACCATTTGACAGCCAAA
GCACCGTCACTTTTCAAAGAAGAAGGGGTTGCTCTTTTAGTACCTTATGG
AATGTACTGGAGTCAAGTCACACCAGAATGTTTTGTAGGAATCGATCTCA
AGACAGCTGAGGTGATTGAAGGGCTTGGTCGTGAACCAGAGACAACAGCA
TATAGTATTCACTTGGGTGTATATGATGCAAGACCTGACGTTCAATGTGT
TATGCATACTCACCCACAGTATTCGACAACACTCTCCGTACTAAAGGTA Run BLAST on NCBI protein sequence of TCONS_00064480-protein >TCONS_00064480-protein ID=TCONS_00064480-protein|Name=TCONS_00064480-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
FRFGMSEGICNHLTAKAPSLFKEEGVALLVPYGMYWSQVTPECFVGIDLK
TAEVIEGLGREPETTAYSIHLGVYDARPDVQCVMHTHPQYSTTLSVLKV Run BLAST on NCBI transcript from alignment at scaffold_418:79247..80176+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064480 ID=TCONS_00064480|Name=TCONS_00064480|organism=Clytia hemisphaerica|type=transcript|length=930bp|location=Sequence derived from alignment at scaffold_418:79247..80176+ (Clytia hemisphaerica)
TTTTCAGGTTTGGTATGAGTGAGGGGATATGCAACCATTTGACAGCCAAA
GCACCGTCACTTTTCAAAGAAGAAGGGGTTGCTCTTTTAGTACCTTATGG
AATGTACTGGAGTCAAGTCACACCAGAATGTTTTGTAGGTAAGAAATCTT
ACATTTGAAATGATCTGCTGAATTAAACACATGGTTTACCTAAATACATT
GCAAATTTATTGAAGTCACGAGCATTTCACCACGAATCCTTTGTTTCATG
GAAGGTTAAGGAATTATAAATAGACctactttttgaagaaatttttcaac
aCTTTAAAATGGCTTAGATATCTTATATCTTGTACTAAGGGTTTGAATGA
CCTTTTTGTGGATATCCACTCGGTTGATATCTATGAGAGAGTTATGGCAG
GTTGAGTATCCGACTTTATAAGAGAATGATTATTCAAGGGGTTGAGTATA
TTCATAAAAATAGGCTTTCCTGTACTGAGTAAATAACTCAGGggctcttt
tttctaaaataatattcaaaatttctaaatgaaaagtccAATAGGAGCAT
TTCAATTCAGATTTAATTGGCAGAACCATTGAGATTTGCACCACAACCac
gacgacagattgaatctagtggtttctttgttttcgagtagaacattttt
caaaatctcacCGGTAAATACTACTTTCAACCCGGCGTTTGTGTCAATAC
CATAGGGGTTTTAAACTGGATTCAATTAGTACAATTCAATGGCTAGTTTA
TTATCTTTAATTGTTTCAGGAATCGATCTCAAGACAGCTGAGGTGATTGA
AGGGCTTGGTCGTGAACCAGAGACAACAGCATATAGTATTCACTTGGGTG
TATATGATGCAAGACCTGACGTTCAATGTGTTATGCATACTCACCCACAG
TATTCGACAACACTCTCCGTACTAAAGGTA Coding sequence (CDS) from alignment at scaffold_418:79247..80176+ >TCONS_00064480 ID=TCONS_00064480|Name=TCONS_00064480|organism=Clytia hemisphaerica|type=CDS|length=594bp|location=Sequence derived from alignment at scaffold_418:79247..80176+ (Clytia hemisphaerica)
TTCAGGTTTGGTATGAGTGAGGGGATATGCAACCATTTGACAGCCAAAGC
ACCGTCACTTTTCAAAGAAGAAGGGGTTGCTCTTTTAGTACCTTATGGAA
TGTACTGGAGTCAAGTCACACCAGAATGTTTTGTAGGAATCGATCTCAAG
ACAGCTGAGGTGATTGAAGGGCTTGGTCGTGAACCAGAGACAACAGCATA
TAGTATTCACTTGGGTGTATATGATGCAAGACCTGACGTTCAATGTGTTA
TGCATACTCACCCACAGTATTCGACAACACTCTCCGTACTAAAGGTATTC
AGGTTTGGTATGAGTGAGGGGATATGCAACCATTTGACAGCCAAAGCACC
GTCACTTTTCAAAGAAGAAGGGGTTGCTCTTTTAGTACCTTATGGAATGT
ACTGGAGTCAAGTCACACCAGAATGTTTTGTAGGAATCGATCTCAAGACA
GCTGAGGTGATTGAAGGGCTTGGTCGTGAACCAGAGACAACAGCATATAG
TATTCACTTGGGTGTATATGATGCAAGACCTGACGTTCAATGTGTTATGC
ATACTCACCCACAGTATTCGACAACACTCTCCGTACTAAAGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064480-exon-scaffold_418-1491911889:79247..79384 | TCONS_00064480-exon-scaffold_418-1491911889:79247..79384 | Clytia hemisphaerica | exon |
| TCONS_00064480-exon-scaffold_418-1510915933:79247..79384 | TCONS_00064480-exon-scaffold_418-1510915933:79247..79384 | Clytia hemisphaerica | exon |
| TCONS_00064480-exon-scaffold_418-1575043694:79247..79384 | TCONS_00064480-exon-scaffold_418-1575043694:79247..79384 | Clytia hemisphaerica | exon |
| TCONS_00064480-exon-scaffold_418-1491911889:80016..80176 | TCONS_00064480-exon-scaffold_418-1491911889:80016..80176 | Clytia hemisphaerica | exon |
| TCONS_00064480-exon-scaffold_418-1510915933:80016..80176 | TCONS_00064480-exon-scaffold_418-1510915933:80016..80176 | Clytia hemisphaerica | exon |
| TCONS_00064480-exon-scaffold_418-1575043694:80016..80176 | TCONS_00064480-exon-scaffold_418-1575043694:80016..80176 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_418 | supercontig | scaffold_418:79247..80176 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001303 | Aldolase_II/adducin_N |
Blast
The following BLAST results are available for this feature:
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