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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064483 ID=TCONS_00064483|Name=TCONS_00064483|organism=Clytia hemisphaerica|type=transcript|length=1346bp
TTATAGATCTTAGAAACGAGGTTAAAACACATTTGGTGTGCAATTAAAAA
TTGATAGATGGCCTCGTTTTCATATTGCAGTTTCGATGAATATCTAACCC
ACGCAAATTGAGCGAAATGATAAAGGTATAAATAGGAGGAGATAGAGAGC
ATATACATCAATTTGTAGAGGTGTGTCGGTCGATATTGGTGCATAAATTT
TCCAATCTATTGCAGCCTAGTTTTATCAAGGAGACAGCAGTTCAATATGC
ATAAACTATTTTTGCTCAGTTTGGGCTTGCTTTGTGTCTTGCAGTTGTCA
CTTGCAAAACACTGTACCAAAAGTTGTAGATACGTTAATTGTGGCAAAGG
AAAACATTGTGTTGTAGATAAGAAGAAATGTACAACTGCTTGTGTTTGTA
GTATCACGTGTGCCAATGTGTTTTGTGCATATGGAAATTGTCAACATAAC
CCAAAGACCTGTGAAACTAAGTGTGTTTGTCCAACAATCTGCACCAAAGA
ATACAAGCCAGTATGTGGATCTGATGGTAAAACCTATGGAAACGCCTGCG
AATTGAATGTAGCAAGCTGTAAAAGCCAGGAAAGCGGTGGTAAACCCATC
TCCAAGAAAAGTGATGGCAAATGTCCTTGCCAGAATCTTTGTCCAACAAC
TCTGTGTGGACCTCGAAGAAAATGCGTCTGGAACCAGAAGACTTGCAAAT
CCTCATGTCCATGTAGAAAAAGCTGTCGTGGAGTACGATGCAAGAATAAG
GCTAGATGCTTCCAAGATAAGAAAACTTGCAGAAGATTCTGCAGATGTTC
GAGAGCTTGTccaaaaatttacagaccagtgtGTGGATCAAACGGTGTAA
CCTACGCCAACCAATGTCTCCTCAATTACGCCACTTGCCAAAGCAAAGGA
AAGATCACCAAGAAGAGAAACGGAAGATGTCCGTGCAAAAAGACTTGCCG
CAATGTCCGATGTGCAAATGGTGCCCGGTGCTTTCACAATCCACGAACCT
GCAAAACTAAATGCGCGTGTTCAAAAGCTTGTCCCAAGATCTTGAAGCCA
GTTTGCGGTACCGATGGAGTGACTTATGACAATGATTGCTTATTGAGATA
TGCCACGTGTAAGAGCAAAggaaaaatccagaaaaagaaAGATGGCAAAT
GTTGTTCAGTTGATTGCACCACAGCTAAATGTTCCAAAGGCGCCAGATGT
TTCCATGATCCTTTAAAATGTGTCACCAAATGCGGTGAGTAATATTATAA
AGAAGCTGTTCTTAgaaacgttcatctaacgttaaattgAGGTTTTTTCG
ATGTTATGTCTTTTCAGATGACTATTCAAAATAACAGTAACCCact Run BLAST on NCBI protein sequence of TCONS_00064483-protein >TCONS_00064483-protein ID=TCONS_00064483-protein|Name=TCONS_00064483-protein|organism=Clytia hemisphaerica|type=polypeptide|length=331bp
MHKLFLLSLGLLCVLQLSLAKHCTKSCRYVNCGKGKHCVVDKKKCTTACV
CSITCANVFCAYGNCQHNPKTCETKCVCPTICTKEYKPVCGSDGKTYGNA
CELNVASCKSQESGGKPISKKSDGKCPCQNLCPTTLCGPRRKCVWNQKTC
KSSCPCRKSCRGVRCKNKARCFQDKKTCRRFCRCSRACPKIYRPVCGSNG
VTYANQCLLNYATCQSKGKITKKRNGRCPCKKTCRNVRCANGARCFHNPR
TCKTKCACSKACPKILKPVCGTDGVTYDNDCLLRYATCKSKGKIQKKKDG
KCCSVDCTTAKCSKGARCFHDPLKCVTKCGE Run BLAST on NCBI transcript from alignment at scaffold_418:89518..93090+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064483 ID=TCONS_00064483|Name=TCONS_00064483|organism=Clytia hemisphaerica|type=transcript|length=3573bp|location=Sequence derived from alignment at scaffold_418:89518..93090+ (Clytia hemisphaerica)
TTATAGATCTTAGAAACGAGGTTAAAACACATTTGGTGTGCAATTAAAAA
TTGATAGATGGCCTCGTTTTCATATTGCAGTTTCGATGAATATCTAACCC
ACGCAAATTGAGCGAAATGATAAAGGTATAAATAGGAGGAGATAGAGAGC
ATATACATCAATTTGTAGAGGTGTGTCGGTCGATATTGGTGCATAAATTT
TCCAATCTATTGCAGCCTAGTTTTATCAAGGAGACAGCAGTTCAATATGC
ATAAACTATTTTTGCTCAGTTTGGGCTTGCTTTGTGTCTTGCAGTTGTCA
CTTGCAAAACACTGTACCAAAAGTTGTAGATACGTTAATTGTGGCAAAGG
AAAACATTGTGTTGTAGATAAGAAGAAATGTACAACTGCTTGTGTTTGTA
GTATCACGTGTGCCAATGTGTTTTGTGCATATGGAAATTGTCAACATAAC
CCAAAGACCTGTGAAACTAAGTGTGGTAAGTTTTTTAGTTCAACTTCTTG
AATTCATTTATCCATATTTGGCCCTTGTGATTTTTCCGCGCTTTATTCGC
GTTCTCTCGTACAAAAAAACCAGCTACAATCTACTTTCGAATAAGCCAAA
GAAATTTAACTCCGGATTTTGTTATATTTAATCCTTAGTTTAATCTCTCG
TTACACTTCTgtcaatacaaaataaacaaatcgaGTGAAGAAGTGATCGA
GTCGAGCCGGTTGGTTATGCAGAACAAAAGTATATGTTTTTATCGAATAT
TAGAcgttataaaaaaatgtgaatCCCTTTCTCATTCAGTATCCCAATTG
AATCATCCCATAAATGAAACAATCAATCTCTTTCTTACAGTTTGTCCAAC
AATCTGCACCAAAGAATACAAGCCAGTATGTGGATCTGATGGTAAAACCT
ATGGAAACGCCTGCGAATTGAATGTAGCAAGCTGTAAAAGCCAGGAAAGC
GGTGGTAAACCCATCTCCAAGAAAAGTGATGGCAAATGTCCTTGCCAGAA
TCTTTGTCCAACAACTCTGTGTGGACCTCGAAGAAAATGCGTCTGGAACC
AGAAGACTTGCAAATCCTCATGTCCATGTAGAAAAAGCTGTCGTGGAGTA
CGATGCAAGAATAAGGCTAGATGCTTCCAAGATAAGAAAACTTGCAGAAG
ATTCTGCAGTACGTATctctaatttgaaaaaaaataccataAACAGTAGG
TCAAAACGTTAAGGGTTATAGACTATATTAAAACTCCAAGGAACTCTTTT
ACATACTTAGAGTACTTTAAAATCCAATGCTCACACAAACATATACAAAA
ATTAATAATGAATTTTGGTTCTTTTAAGGATGTTCGAGAGCTTGTccaaa
aatttacagaccagtgtGTGGATCAAACGGTGTAACCTACGCCAACCAAT
GTCTCCTCAATTACGCCACTTGCCAAAGCAAAGGAAAGATCACCAAGAAG
AGAAACGGAAGATGTCCGTGCAAAAAGACTTGCCGCAATGTCCGATGTGC
AAATGGTGCCCGGTGCTTTCACAATCCACGAACCTGCAAAACTAAATGCG
GTAAGGTTCTAATCAAAACTTTCCCTCGATTTCATGGAAATAGTTGGCTT
AGTTTTTTGGGAACATACGTATAACGAAATGATTTCAGCTTGTTGAAAGC
ACATCGGCCTGTTTCAGAAAATGCCCGTACatggggatggaggatatata
ttgtccggggggtagcgaaaaatcatcaaaatttgctttgtccggggtgt
aaatttgctctgtccggggggtcaactgatgcttgtccggcgGTAAAACC
CGTTATCCGGGgagccaaaagtcactttttcctgggggtaaatcactgaa
aatccTCCACCcgcatattcaatttttttctggaaaagtctaTTTTGACC
CGGTGATATTTAGACAGTAAATACGAAGATTGTCATTATGGAAAGTCGGT
CatatgattcaatttttcagaTATTATTCCAAGCTTTTAAGTAACCAACA
TCTAGAACAAAAAGACTTTCCTTGGCGTATGGCTTTCTATTGGGCATTTG
CAAGCATTTTTATGAATTCTGTTCATTCCCCTACAGCGTGTTCAAAAGCT
TGTCCCAAGATCTTGAAGCCAGTTTGCGGTACCGATGGAGTGACTTATGA
CAATGATTGCTTATTGAGATATGCCACGTGTAAGAGCAAAggaaaaatcc
agaaaaagaaAGATGGCAAATGTTGTTCAGTTGATTGCACCACAGCTAAA
TGTTCCAAAGGCGCCAGATGTTTCCATGATCCTTTAAAATGTGTCACCAA
ATGCGGTGAGTAATATTATAAAGAAGCTGTTCTTAgaaacgttcatctaa
cgttaaattgAGGTTTTTTCGATGTTATGTCTTTTCAGATGACTATTCAA
AATAACAGTAACCCacttggcacacaacgttgtttcaacgttcatctaac
gttatatgaacattagataaacgttaaaacaacattgtgtgtcagctggg
aagaTGGGAAGACTTGCTCAAAAATGTCCATTATGAGTGAAAGAAAATAC
GATAGCAGCAGTAAATGAAATTCAGCCTTTTCATGAAGAATATTTATTGC
GTTGTTATTTATACCCTGTTTTTTAGTTATACCCTGGTACCATCCTTGAA
TTTGTATAAGGACTTTTAACCCTCTTTgaatagactagtaaaccacgtcg
ttgtatttcgctgcttAAACTTGCAATAGGATCTATCTTTCTATATGTTC
ACTGtctttccaaaccactctcccgcggcagtttctattttttataagaa
ctctttataagcactattcccgcgttcctgtgtccaaggaaagacacaCG
CTTGCTAGTCTATATTTGAAAGGCAACAACTTAAAAATGGTNTTTGTCCG
GggtgtaaatttgctctgtccggggggtcaactgatgcttgtccggcgGT
AAAACCCGTTATCCGGGgagccaaaagtcactttttcctgggggtaaatc
actgaaaatccTCCACCcgcatattcaatttttttctggaaaagtctaTT
TTGACCCGGTGATATTTAGACAGTAAATACGAAGATTGTCATTATGGAAA
GTCGGTCatatgattcaatttttcagaTATTATTCCAAGCTTTTAAGTAA
CCAACATCTAGAACAAAAAGACTTTCCTTGGCGTATGGCTTTCTATTGGG
CATTTGCAAGCATTTTTATGAATTCTGTTCATTCCCCTACAGCGTGTTCA
AAAGCTTGTCCCAAGATCTTGAAGCCAGTTTGCGGTACCGATGGAGTGAC
TTATGACAATGATTGCTTATTGAGATATGCCACGTGTAAGAGCAAAggaa
aaatccagaaaaagaaAGATGGCAAATGTTGTTCAGTTGATTGCACCACA
GCTAAATGTTCCAAAGGCGCCAGATGTTTCCATGATCCTTTAAAATGTGT
CACCAAATGCGGTGAGTAATATTATAAAGAAGCTGTTCTTAgaaacgttc
atctaacgttaaattgAGGTTTTTTCGATGTTATGTCTTTTCAGATGACT
ATTCAAAATAACAGTAACCCact Coding sequence (CDS) from alignment at scaffold_418:89518..93090+ >TCONS_00064483 ID=TCONS_00064483|Name=TCONS_00064483|organism=Clytia hemisphaerica|type=CDS|length=3984bp|location=Sequence derived from alignment at scaffold_418:89518..93090+ (Clytia hemisphaerica)
ATGCATAAACTATTTTTGCTCAGTTTGGGCTTGCTTTGTGTCTTGCAGTT
GTCACTTGCAAAACACTGTACCAAAAGTTGTAGATACGTTAATTGTGGCA
AAGGAAAACATTGTGTTGTAGATAAGAAGAAATGTACAACTGCTTGTGTT
TGTAGTATCACGTGTGCCAATGTGTTTTGTGCATATGGAAATTGTCAACA
TAACCCAAAGACCTGTGAAACTAAGTGTGTTTGTCCAACAATCTGCACCA
AAGAATACAAGCCAGTATGTGGATCTGATGGTAAAACCTATGGAAACGCC
TGCGAATTGAATGTAGCAAGCTGTAAAAGCCAGGAAAGCGGTGGTAAACC
CATCTCCAAGAAAAGTGATGGCAAATGTCCTTGCCAGAATCTTTGTCCAA
CAACTCTGTGTGGACCTCGAAGAAAATGCGTCTGGAACCAGAAGACTTGC
AAATCCTCATGTCCATGTAGAAAAAGCTGTCGTGGAGTACGATGCAAGAA
TAAGGCTAGATGCTTCCAAGATAAGAAAACTTGCAGAAGATTCTGCAGAT
GTTCGAGAGCTTGTccaaaaatttacagaccagtgtGTGGATCAAACGGT
GTAACCTACGCCAACCAATGTCTCCTCAATTACGCCACTTGCCAAAGCAA
AGGAAAGATCACCAAGAAGAGAAACGGAAGATGTCCGTGCAAAAAGACTT
GCCGCAATGTCCGATGTGCAAATGGTGCCCGGTGCTTTCACAATCCACGA
ACCTGCAAAACTAAATGCGCGTGTTCAAAAGCTTGTCCCAAGATCTTGAA
GCCAGTTTGCGGTACCGATGGAGTGACTTATGACAATGATTGCTTATTGA
GATATGCCACGTGTAAGAGCAAAggaaaaatccagaaaaagaaAGATGGC
AAATGTTGTTCAGTTGATTGCACCACAGCTAAATGTTCCAAAGGCGCCAG
ATGTTTCCATGATCCTTTAAAATGTGTCACCAAATGCGGTGAGTAAATGC
ATAAACTATTTTTGCTCAGTTTGGGCTTGCTTTGTGTCTTGCAGTTGTCA
CTTGCAAAACACTGTACCAAAAGTTGTAGATACGTTAATTGTGGCAAAGG
AAAACATTGTGTTGTAGATAAGAAGAAATGTACAACTGCTTGTGTTTGTA
GTATCACGTGTGCCAATGTGTTTTGTGCATATGGAAATTGTCAACATAAC
CCAAAGACCTGTGAAACTAAGTGTGTTTGTCCAACAATCTGCACCAAAGA
ATACAAGCCAGTATGTGGATCTGATGGTAAAACCTATGGAAACGCCTGCG
AATTGAATGTAGCAAGCTGTAAAAGCCAGGAAAGCGGTGGTAAACCCATC
TCCAAGAAAAGTGATGGCAAATGTCCTTGCCAGAATCTTTGTCCAACAAC
TCTGTGTGGACCTCGAAGAAAATGCGTCTGGAACCAGAAGACTTGCAAAT
CCTCATGTCCATGTAGAAAAAGCTGTCGTGGAGTACGATGCAAGAATAAG
GCTAGATGCTTCCAAGATAAGAAAACTTGCAGAAGATTCTGCAGATGTTC
GAGAGCTTGTccaaaaatttacagaccagtgtGTGGATCAAACGGTGTAA
CCTACGCCAACCAATGTCTCCTCAATTACGCCACTTGCCAAAGCAAAGGA
AAGATCACCAAGAAGAGAAACGGAAGATGTCCGTGCAAAAAGACTTGCCG
CAATGTCCGATGTGCAAATGGTGCCCGGTGCTTTCACAATCCACGAACCT
GCAAAACTAAATGCGCGTGTTCAAAAGCTTGTCCCAAGATCTTGAAGCCA
GTTTGCGGTACCGATGGAGTGACTTATGACAATGATTGCTTATTGAGATA
TGCCACGTGTAAGAGCAAAggaaaaatccagaaaaagaaAGATGGCAAAT
GTTGTTCAGTTGATTGCACCACAGCTAAATGTTCCAAAGGCGCCAGATGT
TTCCATGATCCTTTAAAATGTGTCACCAAATGCGGTGAGTAAATGCATAA
ACTATTTTTGCTCAGTTTGGGCTTGCTTTGTGTCTTGCAGTTGTCACTTG
CAAAACACTGTACCAAAAGTTGTAGATACGTTAATTGTGGCAAAGGAAAA
CATTGTGTTGTAGATAAGAAGAAATGTACAACTGCTTGTGTTTGTAGTAT
CACGTGTGCCAATGTGTTTTGTGCATATGGAAATTGTCAACATAACCCAA
AGACCTGTGAAACTAAGTGTGTTTGTCCAACAATCTGCACCAAAGAATAC
AAGCCAGTATGTGGATCTGATGGTAAAACCTATGGAAACGCCTGCGAATT
GAATGTAGCAAGCTGTAAAAGCCAGGAAAGCGGTGGTAAACCCATCTCCA
AGAAAAGTGATGGCAAATGTCCTTGCCAGAATCTTTGTCCAACAACTCTG
TGTGGACCTCGAAGAAAATGCGTCTGGAACCAGAAGACTTGCAAATCCTC
ATGTCCATGTAGAAAAAGCTGTCGTGGAGTACGATGCAAGAATAAGGCTA
GATGCTTCCAAGATAAGAAAACTTGCAGAAGATTCTGCAGATGTTCGAGA
GCTTGTccaaaaatttacagaccagtgtGTGGATCAAACGGTGTAACCTA
CGCCAACCAATGTCTCCTCAATTACGCCACTTGCCAAAGCAAAGGAAAGA
TCACCAAGAAGAGAAACGGAAGATGTCCGTGCAAAAAGACTTGCCGCAAT
GTCCGATGTGCAAATGGTGCCCGGTGCTTTCACAATCCACGAACCTGCAA
AACTAAATGCGCGTGTTCAAAAGCTTGTCCCAAGATCTTGAAGCCAGTTT
GCGGTACCGATGGAGTGACTTATGACAATGATTGCTTATTGAGATATGCC
ACGTGTAAGAGCAAAggaaaaatccagaaaaagaaAGATGGCAAATGTTG
TTCAGTTGATTGCACCACAGCTAAATGTTCCAAAGGCGCCAGATGTTTCC
ATGATCCTTTAAAATGTGTCACCAAATGCGGTGAGTAAATGCATAAACTA
TTTTTGCTCAGTTTGGGCTTGCTTTGTGTCTTGCAGTTGTCACTTGCAAA
ACACTGTACCAAAAGTTGTAGATACGTTAATTGTGGCAAAGGAAAACATT
GTGTTGTAGATAAGAAGAAATGTACAACTGCTTGTGTTTGTAGTATCACG
TGTGCCAATGTGTTTTGTGCATATGGAAATTGTCAACATAACCCAAAGAC
CTGTGAAACTAAGTGTGTTTGTCCAACAATCTGCACCAAAGAATACAAGC
CAGTATGTGGATCTGATGGTAAAACCTATGGAAACGCCTGCGAATTGAAT
GTAGCAAGCTGTAAAAGCCAGGAAAGCGGTGGTAAACCCATCTCCAAGAA
AAGTGATGGCAAATGTCCTTGCCAGAATCTTTGTCCAACAACTCTGTGTG
GACCTCGAAGAAAATGCGTCTGGAACCAGAAGACTTGCAAATCCTCATGT
CCATGTAGAAAAAGCTGTCGTGGAGTACGATGCAAGAATAAGGCTAGATG
CTTCCAAGATAAGAAAACTTGCAGAAGATTCTGCAGATGTTCGAGAGCTT
GTccaaaaatttacagaccagtgtGTGGATCAAACGGTGTAACCTACGCC
AACCAATGTCTCCTCAATTACGCCACTTGCCAAAGCAAAGGAAAGATCAC
CAAGAAGAGAAACGGAAGATGTCCGTGCAAAAAGACTTGCCGCAATGTCC
GATGTGCAAATGGTGCCCGGTGCTTTCACAATCCACGAACCTGCAAAACT
AAATGCGCGTGTTCAAAAGCTTGTCCCAAGATCTTGAAGCCAGTTTGCGG
TACCGATGGAGTGACTTATGACAATGATTGCTTATTGAGATATGCCACGT
GTAAGAGCAAAggaaaaatccagaaaaagaaAGATGGCAAATGTTGTTCA
GTTGATTGCACCACAGCTAAATGTTCCAAAGGCGCCAGATGTTTCCATGA
TCCTTTAAAATGTGTCACCAAATGCGGTGAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064483-exon-scaffold_418-1491911889:89518..89992 | TCONS_00064483-exon-scaffold_418-1491911889:89518..89992 | Clytia hemisphaerica | exon |
| TCONS_00064483-exon-scaffold_418-1510915933:89518..89992 | TCONS_00064483-exon-scaffold_418-1510915933:89518..89992 | Clytia hemisphaerica | exon |
| TCONS_00064483-exon-scaffold_418-1575043694:89518..89992 | TCONS_00064483-exon-scaffold_418-1575043694:89518..89992 | Clytia hemisphaerica | exon |
| TCONS_00064483-exon-scaffold_418-1491911889:90358..90675 | TCONS_00064483-exon-scaffold_418-1491911889:90358..90675 | Clytia hemisphaerica | exon |
| TCONS_00064483-exon-scaffold_418-1510915933:90358..90675 | TCONS_00064483-exon-scaffold_418-1510915933:90358..90675 | Clytia hemisphaerica | exon |
| TCONS_00064483-exon-scaffold_418-1575043694:90358..90675 | TCONS_00064483-exon-scaffold_418-1575043694:90358..90675 | Clytia hemisphaerica | exon |
| TCONS_00064483-exon-scaffold_418-1491911889:90846..91067 | TCONS_00064483-exon-scaffold_418-1491911889:90846..91067 | Clytia hemisphaerica | exon |
| TCONS_00064483-exon-scaffold_418-1510915933:90846..91067 | TCONS_00064483-exon-scaffold_418-1510915933:90846..91067 | Clytia hemisphaerica | exon |
| TCONS_00064483-exon-scaffold_418-1575043694:90846..91067 | TCONS_00064483-exon-scaffold_418-1575043694:90846..91067 | Clytia hemisphaerica | exon |
| TCONS_00064483-exon-scaffold_418-1491911889:92760..93090 | TCONS_00064483-exon-scaffold_418-1491911889:92760..93090 | Clytia hemisphaerica | exon |
| TCONS_00064483-exon-scaffold_418-1510915933:92760..93090 | TCONS_00064483-exon-scaffold_418-1510915933:92760..93090 | Clytia hemisphaerica | exon |
| TCONS_00064483-exon-scaffold_418-1575043694:92760..93090 | TCONS_00064483-exon-scaffold_418-1575043694:92760..93090 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_418 | supercontig | scaffold_418:89518..93090 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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