TCONS_00064517 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064517
Unique NameTCONS_00064517
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length495

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064517 ID=TCONS_00064517|Name=TCONS_00064517|organism=Clytia hemisphaerica|type=transcript|length=495bp
CAAAAAGCATATCCATGGCTGATCTTAAAAACATTTTGTGTGCCCTAGAA
GAGACAGCATTTGGTTCAATACAGATCGATCAACCTGAAGATCAGGCAGC
CGCTATTGAAGAACCATCTAAAGATGCTGAACGTGAGAAAAACGAATACA
CTCCTGGAATGCATGTAGCAGCTGCATGGCTAAAGGAGGATAGCACAGAA
TATACATGGTATTTAGGTGTGATAGATTCAGTTGACAAGGATTGCTTGAA
AGTTTCATATTTCTCAAGAAAGGACAAAGCTGGCAGCCAATGGACATTCC
CAGAGGAAGCAGATATTCAAGATACAAAATATGAACAAATCATTAAAAAG
GTGGAAAAGGTTGCTTACCAGTGCACCGTTAGAATTAGATGCCTCATACC
AAAACAACTTGCAGATGATATTAcaagaaaattgaacattttcaaacaat
aaataatttttttaaccaGTTTCACCATTATAATAGTACATTTAG
Run BLAST on NCBI

protein sequence of TCONS_00064517-protein

>TCONS_00064517-protein ID=TCONS_00064517-protein|Name=TCONS_00064517-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
KSISMADLKNILCALEETAFGSIQIDQPEDQAAAIEEPSKDAEREKNEYT
PGMHVAAAWLKEDSTEYTWYLGVIDSVDKDCLKVSYFSRKDKAGSQWTFP
EEADIQDTKYEQIIKKVEKVAYQCTVRIRCLIPKQLADDITRKLNIFKQ
Run BLAST on NCBI

transcript from alignment at scaffold_418:231042..231775-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064517 ID=TCONS_00064517|Name=TCONS_00064517|organism=Clytia hemisphaerica|type=transcript|length=734bp|location=Sequence derived from alignment at scaffold_418:231042..231775- (Clytia hemisphaerica)
CAAAAAGCATATCCATGGCTGATCTTAAAAACATTTTGTGTGCCCTAGAA
GGTAAGAGAAAGAATATCTATTTATTCTGAAAATCACAATTATCATATCA
GTTTCAAAGAAAAAATAATAAGTAAAGTAAGAGAGTCAGGAGTGTACTGG
ACTAAGTTTGTTTACTCTGCCATGGGTAATCAAAATAACTTGTTCATAAT
TTCAGAGACAGCATTTGGTTCAATACAGATCGATCAACCTGAAGATCAGG
CAGCCGCTATTGAAGAACCATCTAAAGATGCTGAACGTGAGAAAAACGAA
TACACTCCTGGAATGCATGTAGCAGCTGCATGGCTAAAGGAGGATAGCAC
AGAATATACATGGTATTTAGGTGAGTTGGGTTGCAATGGAAAATTTTTCC
GTCCTTTTTCCAGTTTACTTTAGAACCATGCTAACTGTTCTCTTTTCATT
CATAGGTGTGATAGATTCAGTTGACAAGGATTGCTTGAAAGTTTCATATT
TCTCAAGAAAGGACAAAGCTGGCAGCCAATGGACATTCCCAGAGGAAGCA
GATATTCAAGATACAAAATATGAACAAATCATTAAAAAGGTGGAAAAGGT
TGCTTACCAGTGCACCGTTAGAATTAGATGCCTCATACCAAAACAACTTG
CAGATGATATTACAAGAAAATTGAACATTTTCAAACAATAAATAATTTTT
TTAACCAGTTTCACCATTATAATAGTACATTTAG

Coding sequence (CDS) from alignment at scaffold_418:231042..231775-

>TCONS_00064517 ID=TCONS_00064517|Name=TCONS_00064517|organism=Clytia hemisphaerica|type=CDS|length=1350bp|location=Sequence derived from alignment at scaffold_418:231042..231775- (Clytia hemisphaerica)
GTGTGATAGATTCAGTTGACAAGGATTGCTTGAAAGTTTCATATTTCTCA
AGAAAGGACAAAGCTGGCAGCCAATGGACATTCCCAGAGGAAGCAGATAT
TCAAGATACAAAATATGAACAAATCATTAAAAAGGTGGAAAAGGTTGCTT
ACCAGTGCACCGTTAGAATTAGATGCCTCATACCAAAACAACTTGCAGAT
GATATTACAAGAAAATTGAACATTTTCAAACAATAAAGACAGCATTTGGT
TCAATACAGATCGATCAACCTGAAGATCAGGCAGCCGCTATTGAAGAACC
ATCTAAAGATGCTGAACGTGAGAAAAACGAATACACTCCTGGAATGCATG
TAGCAGCTGCATGGCTAAAGGAGGATAGCACAGAATATACATGGTATTTA
GAAAAGCATATCCATGGCTGATCTTAAAAACATTTTGTGTGCCCTAGAAG
GTGTGATAGATTCAGTTGACAAGGATTGCTTGAAAGTTTCATATTTCTCA
AGAAAGGACAAAGCTGGCAGCCAATGGACATTCCCAGAGGAAGCAGATAT
TCAAGATACAAAATATGAACAAATCATTAAAAAGGTGGAAAAGGTTGCTT
ACCAGTGCACCGTTAGAATTAGATGCCTCATACCAAAACAACTTGCAGAT
GATATTACAAGAAAATTGAACATTTTCAAACAATAAAGACAGCATTTGGT
TCAATACAGATCGATCAACCTGAAGATCAGGCAGCCGCTATTGAAGAACC
ATCTAAAGATGCTGAACGTGAGAAAAACGAATACACTCCTGGAATGCATG
TAGCAGCTGCATGGCTAAAGGAGGATAGCACAGAATATACATGGTATTTA
GAAAAGCATATCCATGGCTGATCTTAAAAACATTTTGTGTGCCCTAGAAG
GTGTGATAGATTCAGTTGACAAGGATTGCTTGAAAGTTTCATATTTCTCA
AGAAAGGACAAAGCTGGCAGCCAATGGACATTCCCAGAGGAAGCAGATAT
TCAAGATACAAAATATGAACAAATCATTAAAAAGGTGGAAAAGGTTGCTT
ACCAGTGCACCGTTAGAATTAGATGCCTCATACCAAAACAACTTGCAGAT
GATATTACAAGAAAATTGAACATTTTCAAACAATAAAGACAGCATTTGGT
TCAATACAGATCGATCAACCTGAAGATCAGGCAGCCGCTATTGAAGAACC
ATCTAAAGATGCTGAACGTGAGAAAAACGAATACACTCCTGGAATGCATG
TAGCAGCTGCATGGCTAAAGGAGGATAGCACAGAATATACATGGTATTTA
GAAAAGCATATCCATGGCTGATCTTAAAAACATTTTGTGTGCCCTAGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040462XLOC_040462Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064517-proteinTCONS_00064517-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064517-exon-scaffold_418-1575043694:231725..231775TCONS_00064517-exon-scaffold_418-1575043694:231725..231775Clytia hemisphaericaexon
TCONS_00064517-exon-scaffold_418-1575043694:231406..231570TCONS_00064517-exon-scaffold_418-1575043694:231406..231570Clytia hemisphaericaexon
TCONS_00064517-exon-scaffold_418-1575043694:231042..231320TCONS_00064517-exon-scaffold_418-1575043694:231042..231320Clytia hemisphaericaexon
TCONS_00064517-exon-scaffold_418-1510915933:231725..231775TCONS_00064517-exon-scaffold_418-1510915933:231725..231775Clytia hemisphaericaexon
TCONS_00064517-exon-scaffold_418-1510915933:231406..231570TCONS_00064517-exon-scaffold_418-1510915933:231406..231570Clytia hemisphaericaexon
TCONS_00064517-exon-scaffold_418-1510915933:231042..231320TCONS_00064517-exon-scaffold_418-1510915933:231042..231320Clytia hemisphaericaexon
TCONS_00064517-exon-scaffold_418-1491911889:231725..231775TCONS_00064517-exon-scaffold_418-1491911889:231725..231775Clytia hemisphaericaexon
TCONS_00064517-exon-scaffold_418-1491911889:231406..231570TCONS_00064517-exon-scaffold_418-1491911889:231406..231570Clytia hemisphaericaexon
TCONS_00064517-exon-scaffold_418-1491911889:231042..231320TCONS_00064517-exon-scaffold_418-1491911889:231042..231320Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_418supercontigscaffold_418:231042..231775 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.279632	0.458652	0.156075	0.412236	3.01114	2.56344	0.693682	1.34376	0.555087	1.29051	2.51355	0.430489	0.597326	0.45563	0.915702	0.604731	2.45347	0.0954475	0.527463	0.275976	0.904947	0.175503	0.995617	0	2.6637	1.30751	1.36076	0.800609	0.413051	0.159808
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064517 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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