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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064520 ID=TCONS_00064520|Name=TCONS_00064520|organism=Clytia hemisphaerica|type=transcript|length=3175bpRun BLAST on NCBI protein sequence of TCONS_00064520-protein >TCONS_00064520-protein ID=TCONS_00064520-protein|Name=TCONS_00064520-protein|organism=Clytia hemisphaerica|type=polypeptide|length=376bp MDMLCLYCVIMKDLVALETAIKDHVEHNDVKLINFHKMVQVSDILNKVTGRun BLAST on NCBI transcript from alignment at scaffold_418:251945..279226- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064520 ID=TCONS_00064520|Name=TCONS_00064520|organism=Clytia hemisphaerica|type=transcript|length=27282bp|location=Sequence derived from alignment at scaffold_418:251945..279226- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_418:251945..279226- >TCONS_00064520 ID=TCONS_00064520|Name=TCONS_00064520|organism=Clytia hemisphaerica|type=CDS|length=10179bp|location=Sequence derived from alignment at scaffold_418:251945..279226- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00064520 vs. Swiss-Prot (Human)
Match: GRP3 (Ras guanyl-releasing protein 3 OS=Homo sapiens GN=RASGRP3 PE=1 SV=1) HSP 1 Score: 208.764 bits (530), Expect = 1.176e-87 Identity = 104/246 (42.28%), Postives = 158/246 (64.23%), Query Frame = 2
Query: 1082 VIMKDLVALETAIKDHVEHNDVKLINFHKMVQVSDILNKVTGLRDTSPDVVPDKELSNIMRLSLKSRYSEDDLYELSAQREPRSTHKQSTSISPGLERPDFADWAAGITPETPDRATVEKYILNMVEAVFKTYDVDKNGSINKEEFDQLATNFPFIDNFAVLDVNCDGDISRQEMVNYFMNANSQ---EMTKEFLHDFQEHAFYSPTYCVYCMGFLWGIGKSGYRCKVCQIVCHKDCKNHVVMECR 1810
V +KDL+A+ D E N V ++ KM Q+S L+++ L++ S + P+ +L N++ LSL ++EDD+Y+LS EPR++ Q TS + + +WA G+ P+ PD + K+I +VE+VF+ YD D +G I++E+F+ +A NFPF+D+F VLD + DG IS+ EM+ YF+ A SQ +M F+H+FQE + PT+C +C GFLWGI K GY+CK C CHK CK+ +V+ CR
Sbjct: 304 VHLKDLIAVHVIFPDWTEENKVNIV---KMHQLSVTLSELVSLQNASHHLEPNMDLINLLTLSLDLYHTEDDIYKLSLVLEPRNSKSQPTSPTTPNKPVVPLEWALGVMPK-PDPTVINKHIRKLVESVFRNYDHDHDGYISQEDFESIAANFPFLDSFCVLDKDQDGLISKDEMMAYFLRAKSQLHCKMGPGFIHNFQEMTYLKPTFCEHCAGFLWGIIKQGYKCKDCGANCHKQCKDLLVLACR 545 HSP 2 Score: 135.576 bits (340), Expect = 1.176e-87 Identity = 88/306 (28.76%), Postives = 154/306 (50.33%), Query Frame = 1
Query: 196 KAASIDQLVDLTLRNFDEEHRTFESERFVYVFFHTYHWYLTTHELLRHFIDRYENISKTGDNHGLVQIEDAVRYWLNHFGCDFDKNENALNILNTLNS--------KILSRQSNGTIPVELTLEEWHRRRKAGKPPYLNADMRRPSLNFDELPTKDIAKQMVHLCWKGVKKVPVYEWMKYGKSAKTKETPSLKDQIILFNDISKYVVAMILNRESASDRAKSISKFIEMSKYFVELNDYNTLLAVIGGLGHSALTRLQKTKELLSNADKLFIKETNELLSSNHNYTKYRNQVAEVDGYVMPILCHH 1089
KAA++D+L+ + FD+ ++ + + WYL++ EL + Y N + N ++I +RYW+ F +F+ + + + K +S +IP + +R+K K + L FD L ++A+ + L K +++ ++ Y + P+L+ I LFN ISK+V M+L++ + RA+ I+KFI ++K ++L ++NTL+AV+GGL HS+++RL++T LS+ E EL+SSN NY YR A+ DG+ +PIL H
Sbjct: 8 KAATLDELLCTCIEMFDDNGE-LDNSYLPRIVLLMHRWYLSSTELAEKLLCMYRNATGESCNEFRLKICYFMRYWILKFPAEFNLDLGLIRMTEEFREVASQLGYEKHVSLIDISSIPSYDWMRRVTQRKKVSK-------KGKACLLFDHLEPIELAEHLTFLEHKSFRRISFTDYQSYVIHGCLENNPTLERSIALFNGISKWVQLMVLSKPTPQQRAEVITKFINVAKKLLQLKNFNTLMAVVGGLSHSSISRLKETHSHLSSEVTKNWNEMTELVSSNGNYCNYRKAFADCDGFKIPILGVH 305 The following BLAST results are available for this feature:
BLAST of TCONS_00064520 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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