TCONS_00064522 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064522
Unique NameTCONS_00064522
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length669

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064522 ID=TCONS_00064522|Name=TCONS_00064522|organism=Clytia hemisphaerica|type=transcript|length=669bp
CCAGAATGTAATGGCAGGTGGTTATAACTCACTCTGGACCTGCTACATAA
AAATCACATCCATGAAGTTATTTTTGCAGATGCCATTCGCACCCTTCATA
TTGCGGGATGGTCAAAATTCAATTAACTTAATGATACTTGGTGAGTCGAA
TACCGCCAAATCCTTCATTTTGCAGCCCCTTGATgttttatttgattgtt
tttttaatcCTGCTGTGGATAAATATGCTTGGGTAGGGGTTAATGATAAG
GAGTGCATTTTGATGCAGGATTTTGAGTTCACTGAAAAACTTTTTACTTG
GAAATCTTTTTTACTACTGCTAGAGGGTGCCAAGCTTCACTTACCGGCAC
CAAAAAATCAGCAAGCAAAGGATGAATTCTTTGTTACAGATATTCCTGGA
TATTCCGGTCTTTGCAACATCCggggtaaaaattgaaaaaatggatCGTG
CAAACAGGTTGGACATAATGGCAACAGATATGATGGACAGCCGTTGGAAG
TACATTACGCTTACGCACATTTTTTCTAAACATGAGCAAGTTGTCACTCC
ACCGTGTGGTGTTTGTTTTGCAAAACTTGTTTTAACGTGAGAACTTTAAT
TCTGTTGTTTCTAACTTATAAAAAGATTATTTCTCATCCCATTTCTCCAC
ACATTTCTCCACACATTTC
Run BLAST on NCBI

transcript from alignment at scaffold_418:19335..20003

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064522 ID=TCONS_00064522|Name=TCONS_00064522|organism=Clytia hemisphaerica|type=transcript|length=669bp|location=Sequence derived from alignment at scaffold_418:19335..20003 (Clytia hemisphaerica)
GAAATGTGTGGAGAAATGTGTGGAGAAATGGGATGAGAAATAATCTTTTT
ATAAGTTAGAAACAACAGAATTAAAGTTCTCACGTTAAAACAAGTTTTGC
AAAACAAACACCACACGGTGGAGTGACAACTTGCTCATGTTTAGAAAAAA
TGTGCGTAAGCGTAATGTACTTCCAACGGCTGTCCATCATATCTGTTGCC
ATTATGTCCAACCTGTTTGCACGatccattttttcaatttttaccccGGA
TGTTGCAAAGACCGGAATATCCAGGAATATCTGTAACAAAGAATTCATCC
TTTGCTTGCTGATTTTTTGGTGCCGGTAAGTGAAGCTTGGCACCCTCTAG
CAGTAGTAAAAAAGATTTCCAAGTAAAAAGTTTTTCAGTGAACTCAAAAT
CCTGCATCAAAATGCACTCCTTATCATTAACCCCTACCCAAGCATATTTA
TCCACAGCAGgattaaaaaaacaatcaaataaaacATCAAGGGGCTGCAA
AATGAAGGATTTGGCGGTATTCGACTCACCAAGTATCATTAAGTTAATTG
AATTTTGACCATCCCGCAATATGAAGGGTGCGAATGGCATCTGCAAAAAT
AACTTCATGGATGTGATTTTTATGTAGCAGGTCCAGAGTGAGTTATAACC
ACCTGCCATTACATTCTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040465XLOC_040465Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064522-exon-scaffold_418-1491911889:19335..20003TCONS_00064522-exon-scaffold_418-1491911889:19335..20003Clytia hemisphaericaexon
TCONS_00064522-exon-scaffold_418-1510915933:19335..20003TCONS_00064522-exon-scaffold_418-1510915933:19335..20003Clytia hemisphaericaexon
TCONS_00064522-exon-scaffold_418-1575043694:19335..20003TCONS_00064522-exon-scaffold_418-1575043694:19335..20003Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_418supercontigscaffold_418:19335..20003 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.00263	1.50419	0.785929	0.683475	40.2511	36.8205	34.705	36.8534	16.638	18.1132	15.9403	12.2249	9.079	10.5473	6.52537	5.26379	4.74762	4.21338	0.819861	1.37268	3.80304	2.61881	2.38763	2.1707	21.9437	19.732	1.90358	1.5801	1.28405	0.784946
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064522 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top