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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064537 ID=TCONS_00064537|Name=TCONS_00064537|organism=Clytia hemisphaerica|type=transcript|length=1701bp
TTCTTTAGCTCTTATTATTTTTAATTCCTAACAGATTCTGAAAAATAACT
CACCCAAGAAAAGGAAATTAGTCTGACGCCTTATAATTCTTATCTTTCAC
AGGTTTAGGTGCATACATATCCCCTATTTTGACATCAGAGATTGCTCGTT
CGTATCCACGAGATGAAGTTTTAGGGAAAATATCAACATTATGGTTTTCC
TTCTCGCTGGGTTTCGTCGGCGGTCCGTGTATCAATTTCGCCTTTTTACG
AGCTGATTTTTGGTTATTTGGTGTTCATATTGGATATGCTAACGGTTCTG
GTTTGGCTCTCACGATCGTTTACTTTTTAATGTTGATCTTATCGTTTTTC
GTTAGTGATCTCTCAAGAGAGTTTGATTTGAAAGAAGCGACAAGGAATTA
CCATCAACATAACAAATCTTTGGAAATAGAGAAAGCAACGGAGTTAGATT
CATCAGAGAAAATTGATGAAGCATTGAAACAAAGTGATGTTCAGACATCG
ATACTGCCGAAAAATCTAGAATCAGACCAAGAAGAGCCTTTACTAAACAC
TATCAAACAACTGTTAACCAATATAGATGCTATGATTTTATTCATGGTTG
TATTTTTCTTTTCTTTCTCAATGGTTATATTTGACTCTTGGATCTCCATG
ACATGTGTTAATCTCCTGCACTGGAATTTGGCTGAAATCAACGCAATTGT
TTTGGCAACTGGTGCTGTTTGCGGCACAAGTCTTTTAGTTGTCGCTGTTA
TGAACGTAAGTTCGTTTGTCTTTCACATATTGGCTGTTTGCAGTTGCATA
ACATTGGCGTTTGTTTAcgtaatatttttatatttccgTTGGTACGGAGG
TTTGAGTTTCGCCGTTGATATAACGCTTTGGATATGCTATACGTTCTGCT
TTTCACTTCTCGTAATTGGCTTTGAGATGTTCACCTCGACAACATTAGCT
TTGATGGTACCTTCAAGAGTACAAACTTCCGCTGAAAGTATCCGACTAGC
TTTTTTAAATGGCGGTTCTTCAATTGGTATGTTTACGGCAGCGTTCCTGT
TTCACGTATTATCGTATTATAACCCTATATGCATTGTTCTGTGCTTTGCT
CTGTTTTCTATGTTAGTGTGGAGacggaaatttttccaaaatccgAAACA
AATTTTACGTTAGACGAACTTCGATTAGTAGTAGAATTCACTTATTTCGA
TCTcatttattatatatttaattttttgactCCGAGGGCGTTTATGAGAA
TTTTCCGTTCTTAAAAGGTGCGTTTAATCGAAGGGGCGTTTGAAAGAATC
TTGTttcattcgaagtaatacggctAGGAAAATATTGTTGGGGAAAACCT
cagatcaaaatttcaatcGTGAAAATAACTTTGGTTTTGGGGAAAACTCT
GccatattttcttttgttcacaCTAGTGTGATTGGCTTATTTACTATAAT
CATGCCTGTTTTGAGGTGTCTGCAAGAGTGTGCTCATGCTTTAAGGTGAA
AGTGTCAAGTAGAATATGTTGGATTGAAGTAATCATTTTAAGCAAaatat
tcgacaagaaaaatcggaATTTAGTCGATCTTGATAGATATACGACGAAG
CGAAGCGATATCCGATTATTTTTcgttgaatatatgttttatctTTAACA
GaaactttttcatctttcatttcTTTAGTCTCTAtccattttcaaaaagc
t Run BLAST on NCBI transcript from alignment at scaffold_419:80749..82449+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064537 ID=TCONS_00064537|Name=TCONS_00064537|organism=Clytia hemisphaerica|type=transcript|length=1701bp|location=Sequence derived from alignment at scaffold_419:80749..82449+ (Clytia hemisphaerica)
TTCTTTAGCTCTTATTATTTTTAATTCCTAACAGATTCTGAAAAATAACT
CACCCAAGAAAAGGAAATTAGTCTGACGCCTTATAATTCTTATCTTTCAC
AGGTTTAGGTGCATACATATCCCCTATTTTGACATCAGAGATTGCTCGTT
CGTATCCACGAGATGAAGTTTTAGGGAAAATATCAACATTATGGTTTTCC
TTCTCGCTGGGTTTCGTCGGCGGTCCGTGTATCAATTTCGCCTTTTTACG
AGCTGATTTTTGGTTATTTGGTGTTCATATTGGATATGCTAACGGTTCTG
GTTTGGCTCTCACGATCGTTTACTTTTTAATGTTGATCTTATCGTTTTTC
GTTAGTGATCTCTCAAGAGAGTTTGATTTGAAAGAAGCGACAAGGAATTA
CCATCAACATAACAAATCTTTGGAAATAGAGAAAGCAACGGAGTTAGATT
CATCAGAGAAAATTGATGAAGCATTGAAACAAAGTGATGTTCAGACATCG
ATACTGCCGAAAAATCTAGAATCAGACCAAGAAGAGCCTTTACTAAACAC
TATCAAACAACTGTTAACCAATATAGATGCTATGATTTTATTCATGGTTG
TATTTTTCTTTTCTTTCTCAATGGTTATATTTGACTCTTGGATCTCCATG
ACATGTGTTAATCTCCTGCACTGGAATTTGGCTGAAATCAACGCAATTGT
TTTGGCAACTGGTGCTGTTTGCGGCACAAGTCTTTTAGTTGTCGCTGTTA
TGAACGTAAGTTCGTTTGTCTTTCACATATTGGCTGTTTGCAGTTGCATA
ACATTGGCGTTTGTTTAcgtaatatttttatatttccgTTGGTACGGAGG
TTTGAGTTTCGCCGTTGATATAACGCTTTGGATATGCTATACGTTCTGCT
TTTCACTTCTCGTAATTGGCTTTGAGATGTTCACCTCGACAACATTAGCT
TTGATGGTACCTTCAAGAGTACAAACTTCCGCTGAAAGTATCCGACTAGC
TTTTTTAAATGGCGGTTCTTCAATTGGTATGTTTACGGCAGCGTTCCTGT
TTCACGTATTATCGTATTATAACCCTATATGCATTGTTCTGTGCTTTGCT
CTGTTTTCTATGTTAGTGTGGAGacggaaatttttccaaaatccgAAACA
AATTTTACGTTAGACGAACTTCGATTAGTAGTAGAATTCACTTATTTCGA
TCTcatttattatatatttaattttttgactCCGAGGGCGTTTATGAGAA
TTTTCCGTTCTTAAAAGGTGCGTTTAATCGAAGGGGCGTTTGAAAGAATC
TTGTttcattcgaagtaatacggctAGGAAAATATTGTTGGGGAAAACCT
cagatcaaaatttcaatcGTGAAAATAACTTTGGTTTTGGGGAAAACTCT
GccatattttcttttgttcacaCTAGTGTGATTGGCTTATTTACTATAAT
CATGCCTGTTTTGAGGTGTCTGCAAGAGTGTGCTCATGCTTTAAGGTGAA
AGTGTCAAGTAGAATATGTTGGATTGAAGTAATCATTTTAAGCAAaatat
tcgacaagaaaaatcggaATTTAGTCGATCTTGATAGATATACGACGAAG
CGAAGCGATATCCGATTATTTTTcgttgaatatatgttttatctTTAACA
GaaactttttcatctttcatttcTTTAGTCTCTAtccattttcaaaaagc
t
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064537-exon-scaffold_419-1491911889:80749..82449 | TCONS_00064537-exon-scaffold_419-1491911889:80749..82449 | Clytia hemisphaerica | exon |
| TCONS_00064537-exon-scaffold_419-1510915933:80749..82449 | TCONS_00064537-exon-scaffold_419-1510915933:80749..82449 | Clytia hemisphaerica | exon |
| TCONS_00064537-exon-scaffold_419-1575043694:80749..82449 | TCONS_00064537-exon-scaffold_419-1575043694:80749..82449 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_419 | supercontig | scaffold_419:80749..82449 + |
Blast
The following BLAST results are available for this feature:
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