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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064548 ID=TCONS_00064548|Name=TCONS_00064548|organism=Clytia hemisphaerica|type=transcript|length=1353bp
TTTCATTCTAGATGTAGAACTGACTTGAGACACACGTTAGCTAAAGCCAA
ATTCTTGAGTTGGATACACCCCTTAAAAATGGTAAACAAACCATTATttc
ttttgcttcttttgattACCACAATCTTCGCTAACGGTCGAAGGTTTGTT
AACAAGATTACAACATGTCAACAGAAAGAGCTGTTGGAAGGAAAATCTCG
AGTGGAATGTATTTTAATTTGTACAAAGAAAGAGAAATTGGCATTTTATT
CTGATGCATGTTTTTGTGTTGAGAAAGAATGTGGCAATGAGAAAGGAGGT
GGTGAAAGTCATCAACAACATAATGCTTCCATGCTTTATCAACCAGTATT
GAGAGCATCGGAATATGTGATTGATTTCACCAAAGTGACAATCAGTGTCC
CTGAATTGCCAACAACATTCAGATTCACGGTGGGGCAAGTATTATCAATT
AGTGTGTGGATAAAACTACCACCGCATGATTCTGTTTCTGAGTACTGCCC
AACCTTGTTTACTTTCCCACGGTCCGAGGATGCAAATCACAATTTCATTC
AAATGTATTTTTGCGCAGCGTTGCAACACGCATATGTTGGAATTAATGGT
GAAACAGTCACATTTTCTGACCGGCGTCTGAAAACAAAAGATTGGCAACA
TTTCGTTGTCACAATGGTGGAGCAACAAGGTGGAACAAGCCGCGCTGGTA
AAATAAATGTCAGGCTTTATTTGAATGGCCAATTCTCGGACGAAAAGCAA
ACTCAGGTGACCTCCACATTGGTAAAACACGGAAGTAACCCACAACAAGG
CTTTGTACTTGGTAACGACGTTGATGGTTCTTCTCTTGACCAAGTGGAAC
AAAGTTTTCATggacaaatcacaaaattttacaTATATGGTGCAGTATTG
ACAGATGAAGAAATAACCGATTGTTACAAGCACCGCGAACCAGTTAATTG
GCGTCTTGTGTGGTGGGAAGACTTTCAAGGGATTCCAACTAACAATGGTG
ACGTTCAAGAAACAGATTATCCtgaacaattttattttcattaaagaaaa
attaagactGTGTTCGCAGGTAACGGCTCCGTTTTGGATTCCGTTCAAAT
TACAGTTTAAAAACTCTCTCATATTCGAATCTCTTTTATTCGAATCTtgc
tgtaattcgaactaaaatattggtttgtggtttaaattactctttgtaat
tcgaatctttctctgatttgaataaaatttttggtcccttgaagatcgaa
ttagagaaagccAACTGTTCTAAATGAATCGAAATACAATAACAGAGCTG
AAAAgagtttcgaattttagaaatatttgacaaaaatagaGCTCGAATTA
GCG Run BLAST on NCBI protein sequence of TCONS_00064548-protein >TCONS_00064548-protein ID=TCONS_00064548-protein|Name=TCONS_00064548-protein|organism=Clytia hemisphaerica|type=polypeptide|length=347bp
FHSRCRTDLRHTLAKAKFLSWIHPLKMVNKPLFLLLLLITTIFANGRRFV
NKITTCQQKELLEGKSRVECILICTKKEKLAFYSDACFCVEKECGNEKGG
GESHQQHNASMLYQPVLRASEYVIDFTKVTISVPELPTTFRFTVGQVLSI
SVWIKLPPHDSVSEYCPTLFTFPRSEDANHNFIQMYFCAALQHAYVGING
ETVTFSDRRLKTKDWQHFVVTMVEQQGGTSRAGKINVRLYLNGQFSDEKQ
TQVTSTLVKHGSNPQQGFVLGNDVDGSSLDQVEQSFHGQITKFYIYGAVL
TDEEITDCYKHREPVNWRLVWWEDFQGIPTNNGDVQETDYPEQFYFH Run BLAST on NCBI transcript from alignment at scaffold_419:323228..325275+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064548 ID=TCONS_00064548|Name=TCONS_00064548|organism=Clytia hemisphaerica|type=transcript|length=2048bp|location=Sequence derived from alignment at scaffold_419:323228..325275+ (Clytia hemisphaerica)
TTTCATTCTAGATGTAGAACTGACTTGAGACACACGTTAGCTAAAGCCAA
ATTCTTGAGTTGGATACACCCCTTAAAAATGGTAAACAAACCATTATttc
ttttgcttcttttgattACCACAATCTTCGCTAACGGTCGAAGGTTTGTT
AACAAGATTACAACATGTCAACAGAAAGAGCTGTTGGAAGGAAAATCTCG
AGTGGAATGTATTTTAATTTGTACAAAGAAAGAGAAATTGGCATTTTATT
CTGATGCATGTTTTTGTGTTGAGAAAGAATGTGGCAATGAGAAAGGAGGT
GGTGAAAGTCATCAACAACATAATGCTTCCATGCTTTATCAACCAGTATT
GAGTAAGTGACCCAAACAACCAATACCACAGCGTCTTtttaacgttcatt
taacgttatatgcaAGAATGTTAGACGAACGTTTaacattttgtgatttt
ttagaCTAACAATCATGCTTCATCAACCTTTTCCAGTTTGAAAGACCCAA
CTTTTACGCCCTATATTTCTCTGGTACAAAACACTCAGTTCCTGGGGCTC
TTGTAGGTACAGTTAGAAAAAGATAAtaacattttgatgaaaatagtATA
GTAGTTTTGAGCCGGCCCttctcctttattttttttttaaatagcgcCTT
TAGTTATACTGCGATTTTTACCTTTGATACTAAATTAAGCGCTCTATTTT
CAGCAGTcaatagattttcatttttctaagacacttattttgagattgaa
ccttcaaggtcggtctccactttcgcgcgacatgagcaaaaactttttga
cgtttttgtaagctCGTTGATcggatgaaaaatgaagcaattccattgat
CGAAGTTGACgcaacggatgaaaaaagtagaacttccttcaaatttattt
ttgttagcgcgaaacttttttatgacgtaatcttttcttcaggcaaaaaa
atgttaagaaaaaaactgtcgcctatttcgcgcgaaagtggagaccggta
TTTAGACTTGTGGATGACGATAAGTGATTCGAACATTTCTTTTTTAGGAG
CATCGGAATATGTGATTGATTTCACCAAAGTGACAATCAGTGTCCCTGAA
TTGCCAACAACATTCAGATTCACGGTGGGGCAAGTATTATCAATTAGTGT
GTGGATAAAACTACCACCGCATGATTCTGTTTCTGAGTACTGCCCAACCT
TGTTTACTTTCCCACGGTCCGAGGATGCAAATCACAATTTCATTCAAATG
TATTTTTGCGCAGCGTTGCAACACGCATATGTTGGAATTAATGGTGAAAC
AGTCACATTTTCTGACCGGCGTCTGAAAACAAAAGATTGGCAACATTTCG
TTGTCACAATGGTGGAGCAACAAGGTGGAACAAGCCGCGCTGGTAAAATA
AATGTCAGGCTTTATTTGAATGGCCAATTCTCGGACGAAAAGCAAACTCA
GGTGACCTCCACATTGGTAAAACACGGAAGTAACCCACAACAAGGCTTTG
TACTTGGTAACGACGTTGATGGTTCTTCTCTTGACCAAGTGGAACAAAGT
TTTCATggacaaatcacaaaattttacaTATATGGTGCAGTATTGACAGA
TGAAGAAATAACCGATTGTTACAAGCACCGCGAACCAGTTAATTGGCGTC
TTGTGTGGTGGGAAGACTTTCAAGGGATTCCAACTAACAATGGTGACGTT
CAAGAAACAGATTATCCtgaacaattttattttcattaaagaaaaattaa
gactGTGTTCGCAGGTAACGGCTCCGTTTTGGATTCCGTTCAAATTACAG
TTTAAAAACTCTCTCATATTCGAATCTCTTTTATTCGAATCTtgctgtaa
ttcgaactaaaatattggtttgtggtttaaattactctttgtaattcgaa
tctttctctgatttgaataaaatttttggtcccttgaagatcgaattaga
gaaagccAACTGTTCTAAATGAATCGAAATACAATAACAGAGCTGAAAAg
agtttcgaattttagaaatatttgacaaaaatagaGCTCGAATTAGCG Coding sequence (CDS) from alignment at scaffold_419:323228..325275+ >TCONS_00064548 ID=TCONS_00064548|Name=TCONS_00064548|organism=Clytia hemisphaerica|type=CDS|length=2088bp|location=Sequence derived from alignment at scaffold_419:323228..325275+ (Clytia hemisphaerica)
TTTCATTCTAGATGTAGAACTGACTTGAGACACACGTTAGCTAAAGCCAA
ATTCTTGAGTTGGATACACCCCTTAAAAATGGTAAACAAACCATTATttc
ttttgcttcttttgattACCACAATCTTCGCTAACGGTCGAAGGTTTGTT
AACAAGATTACAACATGTCAACAGAAAGAGCTGTTGGAAGGAAAATCTCG
AGTGGAATGTATTTTAATTTGTACAAAGAAAGAGAAATTGGCATTTTATT
CTGATGCATGTTTTTGTGTTGAGAAAGAATGTGGCAATGAGAAAGGAGGT
GGTGAAAGTCATCAACAACATAATGCTTCCATGCTTTATCAACCAGTATT
GAGAGCATCGGAATATGTGATTGATTTCACCAAAGTGACAATCAGTGTCC
CTGAATTGCCAACAACATTCAGATTCACGGTGGGGCAAGTATTATCAATT
AGTGTGTGGATAAAACTACCACCGCATGATTCTGTTTCTGAGTACTGCCC
AACCTTGTTTACTTTCCCACGGTCCGAGGATGCAAATCACAATTTCATTC
AAATGTATTTTTGCGCAGCGTTGCAACACGCATATGTTGGAATTAATGGT
GAAACAGTCACATTTTCTGACCGGCGTCTGAAAACAAAAGATTGGCAACA
TTTCGTTGTCACAATGGTGGAGCAACAAGGTGGAACAAGCCGCGCTGGTA
AAATAAATGTCAGGCTTTATTTGAATGGCCAATTCTCGGACGAAAAGCAA
ACTCAGGTGACCTCCACATTGGTAAAACACGGAAGTAACCCACAACAAGG
CTTTGTACTTGGTAACGACGTTGATGGTTCTTCTCTTGACCAAGTGGAAC
AAAGTTTTCATggacaaatcacaaaattttacaTATATGGTGCAGTATTG
ACAGATGAAGAAATAACCGATTGTTACAAGCACCGCGAACCAGTTAATTG
GCGTCTTGTGTGGTGGGAAGACTTTCAAGGGATTCCAACTAACAATGGTG
ACGTTCAAGAAACAGATTATCCtgaacaattttattttcattaaTTTCAT
TCTAGATGTAGAACTGACTTGAGACACACGTTAGCTAAAGCCAAATTCTT
GAGTTGGATACACCCCTTAAAAATGGTAAACAAACCATTATttcttttgc
ttcttttgattACCACAATCTTCGCTAACGGTCGAAGGTTTGTTAACAAG
ATTACAACATGTCAACAGAAAGAGCTGTTGGAAGGAAAATCTCGAGTGGA
ATGTATTTTAATTTGTACAAAGAAAGAGAAATTGGCATTTTATTCTGATG
CATGTTTTTGTGTTGAGAAAGAATGTGGCAATGAGAAAGGAGGTGGTGAA
AGTCATCAACAACATAATGCTTCCATGCTTTATCAACCAGTATTGAGAGC
ATCGGAATATGTGATTGATTTCACCAAAGTGACAATCAGTGTCCCTGAAT
TGCCAACAACATTCAGATTCACGGTGGGGCAAGTATTATCAATTAGTGTG
TGGATAAAACTACCACCGCATGATTCTGTTTCTGAGTACTGCCCAACCTT
GTTTACTTTCCCACGGTCCGAGGATGCAAATCACAATTTCATTCAAATGT
ATTTTTGCGCAGCGTTGCAACACGCATATGTTGGAATTAATGGTGAAACA
GTCACATTTTCTGACCGGCGTCTGAAAACAAAAGATTGGCAACATTTCGT
TGTCACAATGGTGGAGCAACAAGGTGGAACAAGCCGCGCTGGTAAAATAA
ATGTCAGGCTTTATTTGAATGGCCAATTCTCGGACGAAAAGCAAACTCAG
GTGACCTCCACATTGGTAAAACACGGAAGTAACCCACAACAAGGCTTTGT
ACTTGGTAACGACGTTGATGGTTCTTCTCTTGACCAAGTGGAACAAAGTT
TTCATggacaaatcacaaaattttacaTATATGGTGCAGTATTGACAGAT
GAAGAAATAACCGATTGTTACAAGCACCGCGAACCAGTTAATTGGCGTCT
TGTGTGGTGGGAAGACTTTCAAGGGATTCCAACTAACAATGGTGACGTTC
AAGAAACAGATTATCCtgaacaattttattttcattaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064548-exon-scaffold_419-1491911889:323228..323579 | TCONS_00064548-exon-scaffold_419-1491911889:323228..323579 | Clytia hemisphaerica | exon |
| TCONS_00064548-exon-scaffold_419-1510915933:323228..323579 | TCONS_00064548-exon-scaffold_419-1510915933:323228..323579 | Clytia hemisphaerica | exon |
| TCONS_00064548-exon-scaffold_419-1575043694:323228..323579 | TCONS_00064548-exon-scaffold_419-1575043694:323228..323579 | Clytia hemisphaerica | exon |
| TCONS_00064548-exon-scaffold_419-1491911889:324275..325275 | TCONS_00064548-exon-scaffold_419-1491911889:324275..325275 | Clytia hemisphaerica | exon |
| TCONS_00064548-exon-scaffold_419-1510915933:324275..325275 | TCONS_00064548-exon-scaffold_419-1510915933:324275..325275 | Clytia hemisphaerica | exon |
| TCONS_00064548-exon-scaffold_419-1575043694:324275..325275 | TCONS_00064548-exon-scaffold_419-1575043694:324275..325275 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_419 | supercontig | scaffold_419:323228..325275 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR013320 | ConA-like_dom |
Blast
The following BLAST results are available for this feature:
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