TCONS_00064567 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064567
Unique NameTCONS_00064567
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length387

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064567 ID=TCONS_00064567|Name=TCONS_00064567|organism=Clytia hemisphaerica|type=transcript|length=387bp
gtTTTAACTGATGAATGGACCGATGAAATATTGGCATGCATCACACTAAA
GCACAGTACCGAAATAAACATTGCCCGAAATTTCAAGGAATGTCAATATA
AATGTGAAGCTAAATCATTTTGCAAATCTATTGTATACAACAAGAAAGAT
CAGGGTTGCTACTTGATGAAAGACACTTCTTCCACTGTACCACGTGATTA
TTCAGAACCTTGTAAAACTACCACTCATCCAGAAGACTATTTATATGCTG
AAATAATTGAGCAATGTGGTATCAGCAAAGTTATACAGAAAAGAATTATT
GGGGGACAAGACGCAGATGTTGGAGAATATCCGTGGTATGGTATGCAAAT
GTTGAGTTTACGCCCACAGGAGAAAACTTTACGATTN
Run BLAST on NCBI

transcript from alignment at scaffold_419:274279..275885-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064567 ID=TCONS_00064567|Name=TCONS_00064567|organism=Clytia hemisphaerica|type=transcript|length=1607bp|location=Sequence derived from alignment at scaffold_419:274279..275885- (Clytia hemisphaerica)
GTTTTAACTGATGAATGGACCGATGAAATATTGGCATGCATCACACTAAA
GCACAGTACCGAAATAAACATTGCCCGAAATTTCAAGGAATGTCAATATA
AATGTGAAGCTAAATCATTTTGCAAATCTATTGTATACAACAAGAAAGAT
CAGGGTTGCTACTTGATGAAAGACACTTCTTCCACTGTACCACGTGATTA
TTCAGAACCTTGTAAAACTACCACTCATCCAGAAGACTATTTATATGCTG
AAATAATTGGTAAATGTTAATTATATGCAACCCATGACGTCAAAACGGGG
TAAAAATTACCCCTGTTACCCTCCGTATAGTCTGAGAATCCATTTGGAAG
AAATTCGTCCTTGATTCTAAACGGAACAGGGACCAAAGTTTTTCATTCCG
ACATGAACGGTTTTCGTTGCCCATATGATGAAGTTATCAATAACACGGCT
TTTTTTCTTATAGAGCAATGTGGTATCAGCAAAGTTATACAGAAAAGAAT
TATTGGGGGACAAGACGCAGATGTTGGAGAATATCCGTGGCAGGTTAAAT
ATAATTTATTTTCGAAGTCGAAGCATAAAAAATCTCGTAAAAAATCATCA
CTCTGCATAATGTTTCATCCTATTAATAAGAATTCCTGGTGGGGGTCAAC
AGTGGCCACCTGTCGGAGAGTCTACAGACCCAAAATGAGGCCTAAAAAGA
GCAAAAGCTTTATAAGGAGCTCACGTACAAATTACTTGCTTGAAAAACTC
ATAGAAGCGCTCATAAAAAAGCAGGAGTTCTAAACATCGACCAGAAATGG
TGACCACGACGGGCGACCACGACGGGCGACCACGACCAGCGACCAGATAA
ATTTGGATCGTCGAGTTTTTTCTCTTTTTCCAACGTAGAGTGTCTCTCCT
TATCATTTGAATATCGCATATTGAAGAGAAAGCTCACCCCTTTCTCAATC
TATTTAGAGCCACATGCCCTATGCATAAAACAACCATTTCGATTCGACGC
TCTTGGAGCTTGATTATAGTGTCAATTCCTTTCCTTTTGTAATATCAGCA
TCAAAATACTTAGCGGCATAAAATTGTTTGAAACTGGTGAGAAGCTTTGT
ATTTCATCATCAAATTGTTATTTCTGTCGAAATTAGTCATTTTGTCAGTC
TAAAGACAATTGAGTAATTGATTAGATTCATATCTCTAAAACTGGCTTTC
CAAATTTTTTTCTACTGACAAGTTCTATCTATTCATACTAAAGACATCTC
ATTCAGCATAATTAAAATATTCGATGTAACAAAACTTACAAACATCATAC
TTAATGGCCCTGTCAATATTTTTGTCAAATAGTGTCACTTTGTCAAGAAT
ATGACTGGTTACTTCAAAGGTCACTTTTTAGTATTCTGAGGACTTGATTT
AGACATTCTCTAAGGTGGAGAGAGCAGATAAACTCGATAACCCAAATTTA
TCTGGTCACCGGTCGTGGTCGTCATTTCTGGTCGATGTTTAGAAACTCCC
TAAAAATGCTTATGACAGCTATGGTGTTACATAATGAATACTCTGTTTTT
TAAAGGTATGGTATGCAAATGTTGAGTTTACGCCCACAGGAGAAAACTTT
ACGATTN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040492XLOC_040492Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064567-exon-scaffold_419-1575043694:275627..275885TCONS_00064567-exon-scaffold_419-1575043694:275627..275885Clytia hemisphaericaexon
TCONS_00064567-exon-scaffold_419-1575043694:275347..275422TCONS_00064567-exon-scaffold_419-1575043694:275347..275422Clytia hemisphaericaexon
TCONS_00064567-exon-scaffold_419-1575043694:274279..274330TCONS_00064567-exon-scaffold_419-1575043694:274279..274330Clytia hemisphaericaexon
TCONS_00064567-exon-scaffold_419-1510915933:275627..275885TCONS_00064567-exon-scaffold_419-1510915933:275627..275885Clytia hemisphaericaexon
TCONS_00064567-exon-scaffold_419-1510915933:275347..275422TCONS_00064567-exon-scaffold_419-1510915933:275347..275422Clytia hemisphaericaexon
TCONS_00064567-exon-scaffold_419-1510915933:274279..274330TCONS_00064567-exon-scaffold_419-1510915933:274279..274330Clytia hemisphaericaexon
TCONS_00064567-exon-scaffold_419-1491911889:275627..275885TCONS_00064567-exon-scaffold_419-1491911889:275627..275885Clytia hemisphaericaexon
TCONS_00064567-exon-scaffold_419-1491911889:275347..275422TCONS_00064567-exon-scaffold_419-1491911889:275347..275422Clytia hemisphaericaexon
TCONS_00064567-exon-scaffold_419-1491911889:274279..274330TCONS_00064567-exon-scaffold_419-1491911889:274279..274330Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_419supercontigscaffold_419:274279..275885 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0111267	0.0932496	0.391112	0.217737	0.207651	0	5.67563	2.30198	0	0.126408	2.42954	0	0.398635	0.659663	0	0	0	0	0	0	0	0	0.112719	0	0	0.0569862	0.214097	0	0	0.0952017
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064567 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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