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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064577 ID=TCONS_00064577|Name=TCONS_00064577|organism=Clytia hemisphaerica|type=transcript|length=1660bp
NTACTGATGTACATCTTCTCAATCTACAAAATCAATCATGATTTCACCCT
TATTGAAAATATCAATGCTGGTTTACCACCTTTCAAAcCACCAGTGTTTC
CCTTACATTGTGATATCAACAAGACGATCATAGATGATGATTTACCTCAA
TCAATATCAGTTGTATCCTTCACAGAAAGCGTTAAATATTTCAGTACTGG
CCTAGCTGTCATTCCTTTACTAGCATTTATGGAAGCAATGGCTATTGGGA
AAGCATTTGGTCGTATAAACAATTACAAGATCATACCAACACAAGAGTTG
GTTGCTTTAGGGGTGGCAAACCTGGCTGGTTGTTTTGTTTCAGCCTATCC
AGTCACCGGTAGTTTTTCCAGGACAGCAGTCAATTCTCAAAGTGGTGTCA
AAACTCCTTTGTCTGGTATATTCTCTGGTACCATCGTTGTGCTTGCTACA
CAATATCTGACGCAGTATTTCCACTACATTCCGAAAGCATGTCTTGGATC
CGTCATTATTTGCGCAGTCATCAACATGGTAGATCTAAACATAGTTCGAT
CCATATGGAAAGTCAACAAAATCGACCTCATCCCATACACAATCACTTTC
TTAGCCTGTTTTTACACACTTGAAACAGGTTTGATCCTTGGTATTGCATC
CAGTCTAATCTTATTATTAAAATCAAGCGTCAGCCCACCATTACGCGTAG
AACAAGGCGATGTGCAGGTCATCACAGTTCAAAACGGAGTCTTGTATCCT
GGCATTGAGAAAATAGTAAACAAAGTTGACGAATTGTTTAGCCTGAGTTC
CTTACCCTCTGCTATAGTGTTAGACTTGAAaaatgttgttgaaattgatt
acACAGTAGCTGCAGAGCTTCACGAGCTTGTCTTGCAGTTGAGAAAATGT
GTGAAACAAGACACCGATTTTTGGATTATCAATGCTAATTTTcaagtgaa
gaaaattttgttgttgtCTAATATGCAAGACACTTTGACAACTTGGGAAC
ATTTGCAAGAGAGCTATGCTGGTGCACGGAGGAACTCCCTTCCTTCAATG
ACATGATCGCTGTCGTACACGTTTTTATTAGAAatgtagaaaattttttt
cgagtcTCGGAGGTTCTAACTTTTTGGAAACTTGAaacctcaaattgttc
ttatcttgttcttgTTACTTCAACTTGGAGTGCTTTAGGCTTCTTACCTT
ATTTTTGAAATGCAGCCATTGCAGACTCAAAGTTGTTCTTAAACGATCCT
TATCCTTTGACATTTTTAAGcctcgggttttttttttgattaaaaagaat
ttacCTTTTCATTCTGAAATTCTTTGTCTGACGTCTGTTCAGTCTGAAAT
CTTCAATTGAAACGTATTTCTGTAAACTTAAGCTGTTTCTCACATGTATT
GTtataaaaattagaattttgaatGAGGTCACCAAACCTTACAAAATGTT
ATCTCGAAGATTTCGTAGAAATTCGTAGAGGTTTTCCGGGAGCCCTTGTA
TAACTATGACCTTTAGGCTTATTAAAAGGTGGATTTCAGCAGAGGATTGG
AAAATACGAGTTAAAAggcacgagttaaaaaacacgagttacaaaaaaca
cgagttacgttaaatgtgacgtcatcaatgggaaattatgacgtcacaag
tagataattt Run BLAST on NCBI transcript from alignment at scaffold_419:368349..371010- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064577 ID=TCONS_00064577|Name=TCONS_00064577|organism=Clytia hemisphaerica|type=transcript|length=2662bp|location=Sequence derived from alignment at scaffold_419:368349..371010- (Clytia hemisphaerica)
NTACTGATGTACATCTTCTCAATCTACAAAATCAATCATGATTTCACCCT
TATTGAAAATATCAATGCTGGTTTACCACCTTTCAAAGTAAGTGTCATAT
ACAGATTTTCATTATTATTATTTTTTTTTTTTAGAAAAAGTCAAAAGAAA
TGCTTTACTTCATGAAGCCTAATAACACTTTGCCATTGCTCATATGCAAT
TGTGTCTTTTAAATATGAGCATTTTACGCCCTTTTCTCAGATCTCCCTCT
CCCGGCCCCCTGAATCTTTCTTAGTCTATCAGAATCCATCATTACCTTTG
ATTTTTCATCACTTTTAAGGTTTTATTGATTATTTATTCAGGGGGTGTAT
TGTATTCATTTCTTTGGTTTACCCTCTAGTAAGACGACAAAGCATTAACA
ATTAAGATACCCACTAGCTTACTCCTTTGTTTACTTTTAGCCACCAGTGT
TTCCCTTACATTGTGATATCAACAAGACGATCATAGATGATGATTTACCT
CAATCAATATCAGTTGTATCCTTCACAGAAAGCGTTAAATATTTCAGTAC
TGGCCTAGCTGTCATTCCTTTACTAGCATTTATGGAAGCAATGGCTATTG
GGAAAGGTAAGGCAGTTTTATTTATTACTGAATTTTGACAAGTGTATGTT
CTTCTTTGATAAAAGATGTTGATTTCACCCTTACACTAAAAACAACAAAA
ACTATAACTCTGTAAAATATACCCTCAAAAAAACAAAGACAAAAAACTCT
CAGACATGAACTGATTGAAACTTTTATATTTATAATCTTCATAGCATTTG
GTCGTATAAACAATTACAAGATCATACCAACACAAGAGTTGGTTGCTTTA
GGGGTGGCAAACCTGGCTGGTTGTTTTGTTTCAGCCTATCCAGTCACCGG
TAGTTTTTCCAGGACAGCAGTCAATTCTCAAAGTGGTGTCAAAACTCCTT
TGTCTGGTAAGTGGCGATTGGAGGCCCTTTTTGAGTATGAGTAATAACGG
AAAGGACAAATTGTATAATCATGTTAAACAATAATCCCGTTACGATTATT
GTATAACATTGAGTCTGAAGCCCGATTGGCTAGAGTAGATTCTCTAAACG
CGTCTAGAACACGCCGCAATCATGACGACGGATTGTATCTAGCGGTTCCT
TTGTTTTTGAGGACTCCATTTTTTGAAATCTAGCGATAGATTTATTTTTC
AATCCGGCGTTTGTGTAAAATAACGCGCGGGCGTTCTGGATGGGAAATAC
TAGTGGCCTCATTTCCCATCCAGGAGTCTCAAGTCTAGCAGTTCGGGCTT
GGAAATCAATGTCGTATAATCATTTAGCACCTGCTGTGCATTAAATGACC
CCAGTTTAAAAATAAGAGTTTCATAAAATTACTTCTTTTTGAACTCTGTA
TTTTCTTTTTCTAATAGGTATATTCTCTGGTACCATCGTTGTGCTTGCTA
CACAATATCTGACGCAGTATTTCCACTACATTCCGAAAGCATGTCTTGGA
TCCGTCATTATTTGCGCAGTCATCAACATGGTAGATCTAAACATAGTTCG
ATCCATATGGAAAGTCAACAAAATCGACCTCATCCCATACACAATCACTT
TCTTAGCCTGTTTTTACACACTTGAAACAGGTTTGATCCTTGGTATTGCA
TCCAGTCTAATCTTATTATTAAAATCAAGCGTCAGCCCACCATTACGCGT
AGAACAAGGCGATGTGCAGGTCATCACAGTTCAAAACGGAGTCTTGTATC
CTGGCATTGAGAAAATAGTAAACAAAGTTGACGAATTGTTTAGCCTGAGT
TCCTTACCCTCTGCTATAGTGTTAGACTTGAAAAATGTTGTTGAAATTGA
TTACACAGTAGCTGCAGAGCTTCACGAGCTTGTCTTGCAGTTGAGAAAAT
GTGTGAAACAAGACACCGATTTTTGGATTATCAATGCTAATTTTCAAGTG
AAGAAAATTTTGTTGTTGTCTAATATGCAAGACACTTTGACAACTTGGGA
ACATTTGCAAGAGAGCTATGCTGGTGCACGGAGGAACTCCCTTCCTTCAA
TGACATGATCGCTGTCGTACACGTTTTTATTAGAAATGTAGAAAATTTTT
TTCGAGTCTCGGAGGTTCTAACTTTTTGGAAACTTGAAACCTCAAATTGT
TCTTATCTTGTTCTTGTTACTTCAACTTGGAGTGCTTTAGGCTTCTTACC
TTATTTTTGAAATGCAGCCATTGCAGACTCAAAGTTGTTCTTAAACGATC
CTTATCCTTTGACATTTTTAAGCCTCGGGTTTTTTTTTTGATTAAAAAGA
ATTTACCTTTTCATTCTGAAATTCTTTGTCTGACGTCTGTTCAGTCTGAA
ATCTTCAATTGAAACGTATTTCTGTAAACTTAAGCTGTTTCTCACATGTA
TTGTTATAAAAATTAGAATTTTGAATGAGGTCACCAAACCTTACAAAATG
TTATCTCGAAGATTTCGTAGAAATTCGTAGAGGTTTTCCGGGAGCCCTTG
TATAACTATGACCTTTAGGCTTATTAAAAGGTGGATTTCAGCAGAGGATT
GGAAAATACGAGTTAAAAGGCACGAGTTAAAAAACACGAGTTACAAAAAA
CACGAGTTACGTTAAATGTGACGTCATCAATGGGAAATTATGACGTCACA
AGTAGATAATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064577-exon-scaffold_419-1575043694:370924..371010 | TCONS_00064577-exon-scaffold_419-1575043694:370924..371010 | Clytia hemisphaerica | exon |
| TCONS_00064577-exon-scaffold_419-1575043694:370405..370570 | TCONS_00064577-exon-scaffold_419-1575043694:370405..370570 | Clytia hemisphaerica | exon |
| TCONS_00064577-exon-scaffold_419-1575043694:370055..370216 | TCONS_00064577-exon-scaffold_419-1575043694:370055..370216 | Clytia hemisphaerica | exon |
| TCONS_00064577-exon-scaffold_419-1575043694:368349..369593 | TCONS_00064577-exon-scaffold_419-1575043694:368349..369593 | Clytia hemisphaerica | exon |
| TCONS_00064577-exon-scaffold_419-1510915933:370924..371010 | TCONS_00064577-exon-scaffold_419-1510915933:370924..371010 | Clytia hemisphaerica | exon |
| TCONS_00064577-exon-scaffold_419-1510915933:370405..370570 | TCONS_00064577-exon-scaffold_419-1510915933:370405..370570 | Clytia hemisphaerica | exon |
| TCONS_00064577-exon-scaffold_419-1510915933:370055..370216 | TCONS_00064577-exon-scaffold_419-1510915933:370055..370216 | Clytia hemisphaerica | exon |
| TCONS_00064577-exon-scaffold_419-1510915933:368349..369593 | TCONS_00064577-exon-scaffold_419-1510915933:368349..369593 | Clytia hemisphaerica | exon |
| TCONS_00064577-exon-scaffold_419-1491911889:370924..371010 | TCONS_00064577-exon-scaffold_419-1491911889:370924..371010 | Clytia hemisphaerica | exon |
| TCONS_00064577-exon-scaffold_419-1491911889:370405..370570 | TCONS_00064577-exon-scaffold_419-1491911889:370405..370570 | Clytia hemisphaerica | exon |
| TCONS_00064577-exon-scaffold_419-1491911889:370055..370216 | TCONS_00064577-exon-scaffold_419-1491911889:370055..370216 | Clytia hemisphaerica | exon |
| TCONS_00064577-exon-scaffold_419-1491911889:368349..369593 | TCONS_00064577-exon-scaffold_419-1491911889:368349..369593 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_419 | supercontig | scaffold_419:368349..371010 - |
Blast
BLAST of TCONS_00064577 vs. Swiss-Prot (Human)
Match: S2611 (Sodium-independent sulfate anion transporter OS=Homo sapiens GN=SLC26A11 PE=2 SV=2) HSP 1 Score: 206.068 bits (523), Expect = 5.723e-58 Identity = 123/315 (39.05%), Postives = 184/315 (58.41%), Query Frame = 1
Query: 37 HDFTLIENINAGLPPFKPPVFPLHCDINKTIIDDDLPQSISVVSFTESVKYFSTGLAVIPLLAFMEAMAIGKAFGRINNYKIIPTQELVALGVANLAGCFVSAYPVTGSFSRTAVNSQSGVKTPLSGIFSGTIVVLATQYLTQYFHYIPKACLGSVIICAVINMVDLNIVRSIWKVNKIDLIPYTITFLACFYTLETGXXXXXXXXXXXXXXXXXXXXXRVEQGDVQVITVQNGVLYPGIEKIVNKVDELFSLSSLPSAIVLDLKNVVEIDYTVAAELHELVLQLRKCVKQDTDFWIINANFQVKKILLLSNMQD 981
F L GLPP + P F + N TI SFTE V+ GLAV+PL+ +E++A+ KAF NNY+I QEL+A+G+ N+ G VS+YPVTGSF RTAVN+QSGV TP G+ +G +V+L+ YLT F+YIPK+ L +VII AV + D I R++W+V ++DL+P +TFL CF+ ++ G++ G SL++LL S+ P +V +G V V+ +G+ +P +E + ++ S P +VL+ +V IDYTV L EL L+ KQ + V ++LL ++++
Sbjct: 268 QPFILTGETAEGLPPVRIPPFSV-TTANGTI------------SFTEMVQDMGAGLAVVPLMGLLESIAVAKAFASQNNYRIDANQELLAIGLTNMLGSLVSSYPVTGSFGRTAVNAQSGVCTPAGGLVTGVLVLLSLDYLTSLFYYIPKSALAAVIIMAVAPLFDTKIFRTLWRVKRLDLLPLCVTFLLCFWEVQYGILAGALVSLLMLLHSAARPETKVSEGPVLVLQPASGLSFPAMEALREEILSRALEVSPPRCLVLECTHVCSIDYTVVLGLGEL---LQDFQKQGVALAFVGLQVPVLRVLLSADLKG 566
The following BLAST results are available for this feature:
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