TCONS_00064582 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064582
Unique NameTCONS_00064582
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length373

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064582 ID=TCONS_00064582|Name=TCONS_00064582|organism=Clytia hemisphaerica|type=transcript|length=373bp
CTAATGAACATCATTTTATTTGATACGCGACGCGGCTGTATTAACCAAGA
TGCCGAGTGCATTTTTTGCCTTCTCTGAAGGTAAAGTAGAAGTAATTGGC
TCAACAAAAGCAATGAAAGAGTTTTTGAACGACGAATCTATTAAACGTCG
CTTTCTTGAATGTGCGAAAGCTAATCCGGAAGTGGAGTCGTCAGATGATG
AAGAACCAATAGCTGAAAGTAGTCCAAGTTTGGGGGACGCTTTCAAATGG
GACAAGGAAAGAACACCATTCTGGTGGCCGTCTAACCTTACATTCGGTAA
CATGAAAAGTGTGAATGTTGCATCTTGCGATCGAATACTCGATGCTTACC
GAAAGATGTTGATAAAGTCGAGG
Run BLAST on NCBI

transcript from alignment at scaffold_419:409448..410701-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064582 ID=TCONS_00064582|Name=TCONS_00064582|organism=Clytia hemisphaerica|type=transcript|length=1254bp|location=Sequence derived from alignment at scaffold_419:409448..410701- (Clytia hemisphaerica)
CTAATGAACATCATTTTATTTGGTAAGCATTGGCAGATTTAACTCTTGAT
CGAGACTTCATTTTCTGCTCTCTGTAGAAGATATTTTGAATCGTTGGAAA
AGTAAAAGAAAATATTATAATATTCTGCATAATGCATTTTTTTGCTCTAT
TTTAAGATACGCGACGCGGCTGTATTAACCAAGATGCCGAGTGCATTTTT
TGCCTTCTCTGAAGGTAAAGTAGAAGTAATTGGTAAGTACCAAGCAGATT
ACCTACAATCTTAATGTTTAAAACAACTGATCTTAAGTGACACTAATCAC
AAAAAGACCATTATAAAAAAAGAATCAAAAAGACTGTTTCAGACGTACTT
TATAATAATATATTTCACTCTTCTCAGGCTCAACAAAAGCAATGAAAGAG
TTTTTGAACGACGAATCTATTAAACGTCGCTTTCTTGAATGTGCGAAAGC
TAATCCGGAAGTGGAGTCGTCAGATGATGAAGAACCAATAGCTGAAAGTA
GTCCAAGTAAAATTTCCTACTTTTCTCCGATTTCCGACATTCTACCAGTG
TTGATTATTATTTTTCTACACATTAAACAAACAAACTCTATGATGAAAAT
TTAAGCTATTTCTTTTAGCTCAAATTGTAAAATTAAATGTTATGTCGAAA
AGACATAATTAGAGTTTCAAGAATTAATTCACACCGTGCTTTCCGAAGTG
TGAAATTGAATCTGAATTGCCATCCCCTATCCTTATTTTTACTTATTTTG
TTTATAGGCAGTAAGCAAGAAAGTGCAACATATCCCTTGGAGGAAGGATG
GAATACTGGCAACGTCCATAAAAAAAGGAAGGTCATCCGAGATATCGTGG
TTTGGGATTCAGGTACATGATTTTCAGTACGGCATTTAATTATCATTGCA
AAGAAGTCTTTCTAAGAATGAACAAAATATAAAGAGGATGGGTCAGTTAT
TTTCAACCTATGAGTATTCCTGTTTAGTTTTTCAAATCTAAGAATTTCCG
TAAAAATTAACTCTTTTTAAATCTATTTTATTGTTTGTACAAACTTTCGA
ATTAAGTATCTTTTCGTCTTGAACAAAACTTTTTATTGTTTTTCTAATTT
CTGTTCAGGTTTGGGGGACGCTTTCAAATGGGACAAGGAAAGAACACCAT
TCTGGTGGCCGTCTAACCTTACATTCGGTAACATGAAAAGTGTGAATGTT
GCATCTTGCGATCGAATACTCGATGCTTACCGAAAGATGTTGATAAAGTC
GAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040500XLOC_040500Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064582-exon-scaffold_419-1575043694:410680..410701TCONS_00064582-exon-scaffold_419-1575043694:410680..410701Clytia hemisphaericaexon
TCONS_00064582-exon-scaffold_419-1575043694:410470..410545TCONS_00064582-exon-scaffold_419-1575043694:410470..410545Clytia hemisphaericaexon
TCONS_00064582-exon-scaffold_419-1575043694:410196..410324TCONS_00064582-exon-scaffold_419-1575043694:410196..410324Clytia hemisphaericaexon
TCONS_00064582-exon-scaffold_419-1575043694:409448..409593TCONS_00064582-exon-scaffold_419-1575043694:409448..409593Clytia hemisphaericaexon
TCONS_00064582-exon-scaffold_419-1510915933:410680..410701TCONS_00064582-exon-scaffold_419-1510915933:410680..410701Clytia hemisphaericaexon
TCONS_00064582-exon-scaffold_419-1510915933:410470..410545TCONS_00064582-exon-scaffold_419-1510915933:410470..410545Clytia hemisphaericaexon
TCONS_00064582-exon-scaffold_419-1510915933:410196..410324TCONS_00064582-exon-scaffold_419-1510915933:410196..410324Clytia hemisphaericaexon
TCONS_00064582-exon-scaffold_419-1510915933:409448..409593TCONS_00064582-exon-scaffold_419-1510915933:409448..409593Clytia hemisphaericaexon
TCONS_00064582-exon-scaffold_419-1491911889:410680..410701TCONS_00064582-exon-scaffold_419-1491911889:410680..410701Clytia hemisphaericaexon
TCONS_00064582-exon-scaffold_419-1491911889:410470..410545TCONS_00064582-exon-scaffold_419-1491911889:410470..410545Clytia hemisphaericaexon
TCONS_00064582-exon-scaffold_419-1491911889:410196..410324TCONS_00064582-exon-scaffold_419-1491911889:410196..410324Clytia hemisphaericaexon
TCONS_00064582-exon-scaffold_419-1491911889:409448..409593TCONS_00064582-exon-scaffold_419-1491911889:409448..409593Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_419supercontigscaffold_419:409448..410701 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.75586	0.635444	3.57143	2.22314	0.624133	1.08265	3.79775	1.52337	0.397872	0	0.192096	0	0	0	0	0	0	0	0	0	3.00354	0.995102	0	0.00190438	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064582 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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