TCONS_00064611 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064611
Unique NameTCONS_00064611
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length621

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064611 ID=TCONS_00064611|Name=TCONS_00064611|organism=Clytia hemisphaerica|type=transcript|length=621bp
caaatacataacAACCTATACAATAATATATTTAAATCTAGTACCTAAAT
TAAAGTCATTTTTATTTACTACttcgaaatgaaaatttcagttATGTTCA
AAATATCAACCTCTGGCGACCTGTAATTTCTACACTTAATTCAAactgta
caaaaaatcaaagatgaagagaaaATACTGGAATTCGGCATACTTATTCC
CTAGATAAGCCTCTTGCTTAtcatttgtgaaaaattaattttggggCTTA
AtacatgtcggatatatccgacaatGGCAAATATAGATAAAATATGCGTC
GGACATATCCGTCAATGGCAAATATGGATAGAATATACATGTTGGACATA
TCCGACAATAGCAAGTATAGATAGAATTTTTGCATGTCGGATACagcggc
acggaaagggttaaaagtTGTTTGGTAATTTATTCTGTCAAGAGTAATca
agaatttaattacaaaaatgactttatgaactttaaaaatacGTTAATAA
TAATAGTTATCGCACGGTACCGAGTACAATatggaatatattttttgagt
tcagatttttcgtcatattttccGATCCTTTAGGCGACTATTTTCtgttt
ggttaaagatacattaacttg
Run BLAST on NCBI

transcript from alignment at scaffold_419:284047..284667

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064611 ID=TCONS_00064611|Name=TCONS_00064611|organism=Clytia hemisphaerica|type=transcript|length=621bp|location=Sequence derived from alignment at scaffold_419:284047..284667 (Clytia hemisphaerica)
caagttaatgtatctttaaccaaacaGAAAATAGTCGCCTAAAGGATCgg
aaaatatgacgaaaaatctgaactcaaaaaatatattccatATTGTACTC
GGTACCGTGCGATAACTATTATTATTAACgtatttttaaagttcataaag
tcatttttgtaattaaattcttgATTACTCTTGACAGAATAAATTACCAA
ACAacttttaaccctttccgtgccgctGTATCCGACATGCAAAAATTCTA
TCTATACTTGCTATTGTCGGATATGTCCAACATGTATATTCTATCCATAT
TTGCCATTGACGGATATGTCCGACGCATATTTTATCTATATTTGCCattg
tcggatatatccgacatgtaTTAAGccccaaaattaatttttcacaaatg
aTAAGCAAGAGGCTTATCTAGGGAATAAGTATGCCGAATTCCAGTATttt
ctcttcatctttgattttttgtacagtTTGAATTAAGTGTAGAAATTACA
GGTCGCCAGAGGTTGATATTTTGAACATaactgaaattttcatttcgaaG
TAGTAAATAAAAATGACTTTAATTTAGGTACTAGATTTAAATATATTATT
GTATAGGTTgttatgtatttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040520XLOC_040520Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064611-exon-scaffold_419-1491911889:284047..284667TCONS_00064611-exon-scaffold_419-1491911889:284047..284667Clytia hemisphaericaexon
TCONS_00064611-exon-scaffold_419-1510915933:284047..284667TCONS_00064611-exon-scaffold_419-1510915933:284047..284667Clytia hemisphaericaexon
TCONS_00064611-exon-scaffold_419-1575043694:284047..284667TCONS_00064611-exon-scaffold_419-1575043694:284047..284667Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_419supercontigscaffold_419:284047..284667 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.167944	0.194999	0.0953879	0	0.091764	0	0	0.145128	0	0.174484	0.0573495	0.171809	1.1895	0.249273	0.209895	0.129286	0.198772	0.285012	0.191576	0	0.487318	0	0.269288	0.369814	0.330051	0.236151	0	0.0955765	0.0973774
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064611 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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