TCONS_00064629 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064629
Unique NameTCONS_00064629
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length428

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064629 ID=TCONS_00064629|Name=TCONS_00064629|organism=Clytia hemisphaerica|type=transcript|length=428bp
AGTAAATTCATGAAACAAGTGCGCCAATAACTATGGAGCTAACAAAAATA
TATATGGCAAATGCTGGTTGATAAGATTGTGTGGTCGGTGTTACAAAAGG
GAGATCTAACACTTAACAGCTGATGCAAGAATTTATGcaagaaacaattt
tacaattcCCCAAACANGCACTTAACAGCTGATGCAAGAATTCATGCAgg
aaacaattttacaattcCCCAAACATTTGACTCTGAATTTGGCAACAAAA
CTCTAACTTTTTTGTCTTATGGAGAAACACCGGTCTTCTCCACTTAGCGT
GGGGCAACCAAATATCACAATGGAAGTGCACAAAAATTGTTATCGCTTCA
AACGTTgcaaatcttttaaattttgttgaCCTTCCAACCCttgattttaa
gaaatttatttttattataccgACTAAC
Run BLAST on NCBI

transcript from alignment at scaffold_419:558666..559093

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064629 ID=TCONS_00064629|Name=TCONS_00064629|organism=Clytia hemisphaerica|type=transcript|length=428bp|location=Sequence derived from alignment at scaffold_419:558666..559093 (Clytia hemisphaerica)
GTTAGTcggtataataaaaataaatttcttaaaatcaaGGGTTGGAAGGt
caacaaaatttaaaagatttgcAACGTTTGAAGCGATAACAATTTTTGTG
CACTTCCATTGTGATATTTGGTTGCCCCACGCTAAGTGGAGAAGACCGGT
GTTTCTCCATAAGACAAAAAAGTTAGAGTTTTGTTGCCAAATTCAGAGTC
AAATGTTTGGGgaattgtaaaattgtttccTGCATGAATTCTTGCATCAG
CTGTTAAGTGCNTGTTTGGGgaattgtaaaattgtttcttgCATAAATTC
TTGCATCAGCTGTTAAGTGTTAGATCTCCCTTTTGTAACACCGACCACAC
AATCTTATCAACCAGCATTTGCCATATATATTTTTGTTAGCTCCATAGTT
ATTGGCGCACTTGTTTCATGAATTTACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040538XLOC_040538Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064629-exon-scaffold_419-1491911889:558666..559093TCONS_00064629-exon-scaffold_419-1491911889:558666..559093Clytia hemisphaericaexon
TCONS_00064629-exon-scaffold_419-1510915933:558666..559093TCONS_00064629-exon-scaffold_419-1510915933:558666..559093Clytia hemisphaericaexon
TCONS_00064629-exon-scaffold_419-1575043694:558666..559093TCONS_00064629-exon-scaffold_419-1575043694:558666..559093Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_419supercontigscaffold_419:558666..559093 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.79855	3.15788	1.78293	1.35061	0.436929	1.20843	0.479715	0.974923	0.40954	0.914228	0	0	0.327553	0	0.56151	1.6711	0.809181	1.03847	0.879961	0.43072	0.800356	1.31214	2.22728	2.44288	0	0	0.92062	0.39473	1.02614	0.984794
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064629 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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