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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064633 ID=TCONS_00064633|Name=TCONS_00064633|organism=Clytia hemisphaerica|type=transcript|length=904bp
ATCCTTTCTGCTAACCAAGTTATTAATTTCGGGAATGAGTTGTTTATCTA
GATGTTTTTGATAAGATACAGCGTTCAACTTCATTCCATCATCACTCACG
AAAAAAGGTTTCGTCGCACCGTACCATGAAATGCAAGCAGAAACCATGAC
TTTTTTACTTGTTCTTTTGATGGAACAAGTTTTTATCAGGAACATCACTT
TTCTTTCCCTTACCATACACACAACTATTTTGGCTATTAAAAGGAACTTC
AAGCGTGAAATCCTTTTCATCCTGCCACACACAACGTTCGATACTCCTTT
TGCTTTTTCCAAACCTTTCAGCCAAAGTAGTGGCTCTCTCTGCTCGTCGC
TGTTTGGTTGCAGAATTTACTCGAGGAGTTTTCAATCGCTTGTACTGTTT
ATAACCATTTCTCTTTACCATTCTGACAACTGATGATCTCTTAATTCCAG
TGTATTTCTCTATTTCCCGTGGTGACAAATGTCTACCAGGGTTGTCCTCT
TGAGAACATATCAAATCATCAATTAAGGCTTCATTCTCAGGTGTTGTAAC
AGTTCTTGGTCTCCCAGATCCGGGTCTTCTGTCCATTGAACCATACCNGA
CAAATGTGTACCAGGGTTGTCCTCTTGAGAACATATCAAATCATCAATTA
AGGCTTCATTCTCAGGTGTTGTAACAGTTCTTAGTCTCCCAGATCCGGGT
CTTCTGTCCATTGAACCATACTGCTTAAATCGATTGATTAAGTTTTGAAC
GGATGTTTTGTGCCATTTCTTTGTAGGGTGCTCGGTACAAATTCGATAAG
CTGTCCATTGTTTTTCTTCGTAATCATTTTTGATAACAGCCTTGTCTTCG
TCAGAAAAAACCATTTCAGCGTCAAAAAAGAGACTCCGATACCATCGATG
TCAG Run BLAST on NCBI protein sequence of TCONS_00064633-protein >TCONS_00064633-protein ID=TCONS_00064633-protein|Name=TCONS_00064633-protein|organism=Clytia hemisphaerica|type=polypeptide|length=159bp
MFSRGQPWYTFVXYGSMDRRPGSGRPRTVTTPENEALIDDLICSQEDNPG
RHLSPREIEKYTGIKRSSVVRMVKRNGYKQYKRLKTPRVNSATKQRRAER
ATTLAERFGKSKRSIERCVWQDEKDFTLEVPFNSQNSCVYGKGKKSDVPD
KNLFHQKNK Run BLAST on NCBI transcript from alignment at scaffold_42:6856..7759 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064633 ID=TCONS_00064633|Name=TCONS_00064633|organism=Clytia hemisphaerica|type=transcript|length=904bp|location=Sequence derived from alignment at scaffold_42:6856..7759 (Clytia hemisphaerica)
CTGACATCGATGGTATCGGAGTCTCTTTTTTGACGCTGAAATGGTTTTTT
CTGACGAAGACAAGGCTGTTATCAAAAATGATTACGAAGAAAAACAATGG
ACAGCTTATCGAATTTGTACCGAGCACCCTACAAAGAAATGGCACAAAAC
ATCCGTTCAAAACTTAATCAATCGATTTAAGCAGTATGGTTCAATGGACA
GAAGACCCGGATCTGGGAGACTAAGAACTGTTACAACACCTGAGAATGAA
GCCTTAATTGATGATTTGATATGTTCTCAAGAGGACAACCCTGGTACACA
TTTGTCNGGTATGGTTCAATGGACAGAAGACCCGGATCTGGGAGACCAAG
AACTGTTACAACACCTGAGAATGAAGCCTTAATTGATGATTTGATATGTT
CTCAAGAGGACAACCCTGGTAGACATTTGTCACCACGGGAAATAGAGAAA
TACACTGGAATTAAGAGATCATCAGTTGTCAGAATGGTAAAGAGAAATGG
TTATAAACAGTACAAGCGATTGAAAACTCCTCGAGTAAATTCTGCAACCA
AACAGCGACGAGCAGAGAGAGCCACTACTTTGGCTGAAAGGTTTGGAAAA
AGCAAAAGGAGTATCGAACGTTGTGTGTGGCAGGATGAAAAGGATTTCAC
GCTTGAAGTTCCTTTTAATAGCCAAAATAGTTGTGTGTATGGTAAGGGAA
AGAAAAGTGATGTTCCTGATAAAAACTTGTTCCATCAAAAGAACAAGTAA
AAAAGTCATGGTTTCTGCTTGCATTTCATGGTACGGTGCGACGAAACCTT
TTTTCGTGAGTGATGATGGAATGAAGTTGAACGCTGTATCTTATCAAAAA
CATCTAGATAAACAACTCATTCCCGAAATTAATAACTTGGTTAGCAGAAA
GGAT Coding sequence (CDS) from alignment at scaffold_42:6856..7759 >TCONS_00064633 ID=TCONS_00064633|Name=TCONS_00064633|organism=Clytia hemisphaerica|type=CDS|length=480bp|location=Sequence derived from alignment at scaffold_42:6856..7759 (Clytia hemisphaerica)
ATGTTCTCAAGAGGACAACCCTGGTACACATTTGTCNGGTATGGTTCAAT
GGACAGAAGACCCGGATCTGGGAGACCAAGAACTGTTACAACACCTGAGA
ATGAAGCCTTAATTGATGATTTGATATGTTCTCAAGAGGACAACCCTGGT
AGACATTTGTCACCACGGGAAATAGAGAAATACACTGGAATTAAGAGATC
ATCAGTTGTCAGAATGGTAAAGAGAAATGGTTATAAACAGTACAAGCGAT
TGAAAACTCCTCGAGTAAATTCTGCAACCAAACAGCGACGAGCAGAGAGA
GCCACTACTTTGGCTGAAAGGTTTGGAAAAAGCAAAAGGAGTATCGAACG
TTGTGTGTGGCAGGATGAAAAGGATTTCACGCTTGAAGTTCCTTTTAATA
GCCAAAATAGTTGTGTGTATGGTAAGGGAAAGAAAAGTGATGTTCCTGAT
AAAAACTTGTTCCATCAAAAGAACAAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064633-exon-scaffold_42-1491911889:6856..7759 | TCONS_00064633-exon-scaffold_42-1491911889:6856..7759 | Clytia hemisphaerica | exon |
| TCONS_00064633-exon-scaffold_42-1510915933:6856..7759 | TCONS_00064633-exon-scaffold_42-1510915933:6856..7759 | Clytia hemisphaerica | exon |
| TCONS_00064633-exon-scaffold_42-1575043694:6856..7759 | TCONS_00064633-exon-scaffold_42-1575043694:6856..7759 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_42 | supercontig | scaffold_42:6856..7759 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR011991 | WHTH_DNA-bd_dom |
Blast
The following BLAST results are available for this feature:
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