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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064640 ID=TCONS_00064640|Name=TCONS_00064640|organism=Clytia hemisphaerica|type=transcript|length=1052bp
TATCGACGTGTGATTACTCTCGATATTCTTTCCGCCCTTATACTAAGTAT
CACGTGACAAAGAAGCGCCGAaggaacaaaaataaattcaaaaattttga
aaaatgttttaaaacatGTACACCTGATAACGAGAATCCATGCACGACGG
GTTAGCTCTTCTCTTCACTAAACCTGGCAAACGACAATTTGACAACTTTC
ACGGGGtctaattttcaaaatcctGCGAAACTAAAAggatcaaaaaaaat
tgaaaaaatatatggaaTATAATAAGATAACTGTCAACTTTGTGAAGCAA
TTGTTCATTAAAAGTGCACTGCCACTTAAAAACGAGTCTAAAAAGGaact
ataaaataaaacacaaagaGCACTTACAACCAAAAACGATCCAAAAGTTA
AAACACCATGACCAAAAAATACTTACCACCGATGGctgaaaaaatttcaa
tatcCCTCAGGGGAATGTAGTTTGGATGAATTTGTCTTTTCTGCAGTCGA
GTCACAAGTCAAACTAATTCAATTAGTGATTTGTACGAAGCTCAATGTCA
TATTTCATTTCGAAATGATTGAAAACCCGTAAAAGTTACCTTTCTTTTAA
ACGTAAGCGTCTAGTTCACATTTCATCTCGATAATCGTCACGTTTAATTT
TCACTATTGAAAACAAGTTGTAAAAAGCCATTGCTTTGCATTATCCAGAT
AGTGATTGCCtatgatttcttttgtttcaagcagGCAATAATTTTCTGCC
ATTCTGCCTTGCCGCACATTGCACATGTAAGTTGGTAAATGGGAAAATAG
CTTTGAAATAAAACTAAACCATCATTAAAGATATAGTTTCCAAATTGACC
AAGAAGTCGATCGTCTTGTAAAAAGCCATTGCTTTGCATTATGTATCCAG
ACAGTAGCTTAAACTAGATGGTCGGCTCTGAAACCGTTTGCAATATTCCC
CTCCAACATTTGCCGGTGGTTACGCTCATGAATCTGTTTTCCAGTAATTG
CCTTTGGTTCCTTTCGTTTGAAGACATTAATATTCTCGTCGTTTTATacc
aa Run BLAST on NCBI transcript from alignment at scaffold_420:43976..48134+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064640 ID=TCONS_00064640|Name=TCONS_00064640|organism=Clytia hemisphaerica|type=transcript|length=4159bp|location=Sequence derived from alignment at scaffold_420:43976..48134+ (Clytia hemisphaerica)
TATCGACGTGTGATTACTCTCGATATTCTTTCCGCCCTTATACTAAGTAT
CACGTGACAAAGAAGCGCCGAaggaacaaaaataaattcatttattttct
aattcgtacactcaaacgaaaataaccttatttattattttacttCTTCT
TCTTATCACTTTATATACCTAGTATATAAAACATAGTATGGTCGTCTAGA
TAACCTGTAACTTGTCACAGAGAGAAAGAGGTATGTATCAGAGGCCTAGC
CCTAGAGAAACCTTCAAAAGACTATTTATATCTTCTTGAACATATCCGTT
CTTTACACCAGCGGTTTTCCACCTCNGTAACTTGTCACAGAGAGAAAGAG
GTATGTATCAGAGGCCTAGCCCTAGAGAAACTTTCAAAAGACTATTTATA
TCTTCTTGAACATATCCGTTCTTCACACCAGCGGTTTCCCCCCTGCCATG
CTTCTGGAAAAGTCTATCATTAACTCCCCGGTTAGCGGCTTCCGTAGCTC
CGCCCCTCCTTAGGCTGTGGAGTCCAAAAAGTTTTACGTCAAGACCAATT
CTCTTGATATAAAGCAAAACAGCGGACCTGGCCGTTGAGTAACAAATGGG
TTTGTTCTTATTTCTCAGTTTATGAATGCcctttttcttaaagaaagaaG
TGGCACGGAATAGGTACTCATTATCGTTGGTTATGTTTGCATTCTTAGTA
AATCTAAGCAGTGTCTTAACAGGACAAAAGGGGGAATCTAATTTGGCAAT
ATAGACCCAAGCCCCTTCACGATGTTGGtctgtttttgacttttctatGA
ATAGTTTCATATACGTCTCAAAGACTAGAATGTCCCCAAAGATTAAATTT
GAAACCTCATCATAACGTAGAAATCCAGCATACGATAAGATGATAATGGT
AAAATTCCTCAAATCAAGCAGGTTAGCCTGGTCCCCATTAATCAATTGAA
AGATCTTACGAATGTGATCTGAAGTGATTGGTTCTTTTTTCGAACTTTTT
CTGTGGCAGATTCTTTTTGCAGCTTCGAGGATGTATTCGGCTAGCGTAGA
AGATGTTGGATCTGGCTTCGAAGCCACATTGTGGAAATGTTTCACGGCGT
AGAATACAGATTCTATAACGTGGAAAGATTCGCCAAGCTGGATAAGGCTG
ATGATATATAGAACGAAGTGAAAGTCTTTGGCTGGAAAAGGCTGGACCTC
TTCGAATGTCGCACACCATCTTTCCCATTTTTTGAAGTAGCAGCTATATT
TGTTAATTGTACTCTCTGCACGAGCTTTCGTCAGGATATCTCCGATTCCG
GTAGCGAGCTCTTTAAGCTGTGGATCATCAACACGAGAAGACAGGTCTTG
GGCGACTTGTGCTAAAGGTATAAGTGAAATGCAAGAGCAAATTACTATTT
TGTCGTAAATATGAGGCATTTTTGACTTTATGCTACGGCAGCCAAGCTGC
CATAGCGACCTAGTCGCTAAACTCTGGCCTCAGTTGATACCGCTAATCAA
CCCCTGCCTCACCCTTCTTTTTGGGTGtagaaaatatatttcaaaattaa
tataGCCTTGGTTGATACCACTAATCAACCTCTGCCTCACCCTTCTTTTT
GGGTGtagaaaatatatttcaaaattaatataGCCTTGGTTGATACCACT
AATCAACCTCTGCCTCACCCTTCTTCTGGGTGCAGAAATACATGTTAAAA
TTAAAACAGCCTCAGTTGATACCACTAATCAACCCCTGCCTCACCCTTTT
CCTTGGGTGTAGAAATACATGTTAAAATTAATTCAGCTTCTTTCTATAAG
GTGATAAGGACTATCCTTCTGAATCAACTAATAACCTCTAAGGCTATGAT
ACGTCCTCTATATCGTGGAGAACCGAGTAAAGAGTATTTGTACCTCCCAA
GGCGTAACAAGTTCGACGTGTCTTCGAAAATAACGTAATCCTtgacaaaa
tatgaaaattcatCCCCTTCTCTTAGAAGGGGCCAAAAAGAAGACGCTGT
CCAAAAAGGTATGACGAGCACCCCTTTAATTCCTGGTTGGCTTTTTAAAA
GGCGTAAGACTTGAGGAATCTGACTGACAGGAGGAACTAATAAATTTCGC
TCTAAGCGCCAGTCTTGAGTGAAGGCGTCAACAGCCTCTGTACCGGGCAC
AACATACTTGGAATTAAACCTCTCGCATTTTGCATTGTCAAAATTAGCGA
ATTTGTCGACTGTAAAGTTACCCCAACGATGTTCGAGAAAGTGCAAAATT
TCCTCTGTGATTTCCCAGTCGTCTGGATCTATTATTTTAGAAACTCTGTC
CGCTACTCGGTTCTCGTCCCTAGGAACCCAATTCACTTCCAAATTTATAT
TAAAGTTACGAGACAATTCGTAGATTCTTAGTGCTAATTCTTGTAAATGG
GGCTTATTGCTACCACCTGAAGAAACATACATGGCTGCTCTATTATCTGC
CATCCAAGATATGGAAGAGTTACTTAACTTATGGCAAAATGAATCCAATC
CGAATCTGATCGCTTCGAGTTCCCTCCAAGTTGAACTTCTATCAATTTCC
TCTACATCAAACATTTTGTTACACACATTTAAAATCGAATTCTCTTTTAA
TACATCTCCTATCCCACTGCTACTTGCGTCAGAATAGATAGTATACTTCA
CTTGGGACTTTAACACGCTTTTGTTTTTTAATACATTTACATTGTCTCTC
CAAAAAAGAATTTCTCTGAGCGTCTggataattgaaaatgttaaacTTCC
CATCCCATGAGACAGCTTCATCAATGGCTTTGTATAAAGATCTAGTTTTT
AATTTGATAATGTTTGACAAAACAAATTTCATTATGGTCGTCTAGATAGC
AAGAGTGCGAAAAGAAATGTCTTACAAATCCTATTTGTAAACATACATAA
ACTAACGTAATATAAACaccaaattatcaaaataataaagtaaatgTTAT
AGAGCTACATAAAAGGGCGGGTGGGNAAAATTATCGATACTCCATGGTTT
TAAAGCtataaaactaaatttggctttcaaatcttttcaaaagCAAAATC
CATTGAAAATAGCTTGGATTGGTTATAAAAGAAGCTAATGTACCCTGTag
gctttttcagaaaagttgaaaaaaattctaaaaatattcaCCAAATATGT
TCTCCATTGCCAGCTATTGTTACACACCAAACTAAAAGTaaaagacaaaa
attttgaaaaatgttttaaaacatGTACACCTGATAACGAGAATCCATGC
ACGACGGGTTAGCTCTTCTCTTCACTAAACCTGGCAAACGACAATTTGAC
AACTTTCACGGGGtctaattttcaaaatcctGCGAAACTAAAAggatcaa
aaaaaattgaaaaaatatatggaaTATAATAAGATAACTGTCAACTTTGT
GAAGCAATTGTTCATTAAAAGTGCACTGCCACTTAAAAACGAGTCTAAAA
AGGaactataaaataaaacacaaagaGCACTTACAACCAAAAACGATCCA
AAAGTTAAAACACCATGACCAAAAAATACTTACCACCGATGGctgaaaaa
atttcaatatcCCTCAGGGGAATGTAGTTTGGATGAATTTGTCTTTTCTG
CAGTCGAGTCACAAGTCAAACTAATTCAATTAGTGATTTGTACGAAGCTC
AATGTCATATTTCATTTCGAAATGATTGAAAACCCGTAAAAGTTACCTTT
CTTTTAAACGTAAGCGTCTAGTTCACATTTCATCTCGATAATCGTCACGT
TTAATTTTCACTATTGAAAACAAGTTGTAAAAAGCCATTGCTTTGCATTA
TCCAGATAGTGATTGCCtatgatttcttttgtttcaagcagGCAATAATT
TTCTGCCATTCTGCCTTGCCGCACATTGCACATGTAAGTTGGTAAATGGG
AAAATAGCTTTGAAATAAAACTAAACCATCATTAAAGATATAGTTTCCAA
ATTGACCAAGAAGTCGATCGTCTTGTAAAAAGCCATTGCTTTGCATTATG
TATCCAGACAGTAGCTTAAACTAGATGGTCGGCTCTGAAACCGTTTGCAA
TATTCCCCTCCAACATTTGCCGGTGGTTACGCTCATGAATCTGTTTTCCA
GTAATTGCCTTTGGTTCCTTTCGTTTGAAGACATTAATATTCTCGTCGTT
TTATaccaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064640-exon-scaffold_420-1491911889:43976..44064 | TCONS_00064640-exon-scaffold_420-1491911889:43976..44064 | Clytia hemisphaerica | exon |
| TCONS_00064640-exon-scaffold_420-1510915933:43976..44064 | TCONS_00064640-exon-scaffold_420-1510915933:43976..44064 | Clytia hemisphaerica | exon |
| TCONS_00064640-exon-scaffold_420-1575043694:43976..44064 | TCONS_00064640-exon-scaffold_420-1575043694:43976..44064 | Clytia hemisphaerica | exon |
| TCONS_00064640-exon-scaffold_420-1491911889:47172..48134 | TCONS_00064640-exon-scaffold_420-1491911889:47172..48134 | Clytia hemisphaerica | exon |
| TCONS_00064640-exon-scaffold_420-1510915933:47172..48134 | TCONS_00064640-exon-scaffold_420-1510915933:47172..48134 | Clytia hemisphaerica | exon |
| TCONS_00064640-exon-scaffold_420-1575043694:47172..48134 | TCONS_00064640-exon-scaffold_420-1575043694:47172..48134 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_420 | supercontig | scaffold_420:43976..48134 + |
Blast
The following BLAST results are available for this feature:
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