TCONS_00064792 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064792
Unique NameTCONS_00064792
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length403

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064792 ID=TCONS_00064792|Name=TCONS_00064792|organism=Clytia hemisphaerica|type=transcript|length=403bp
GGAAGATATCCTTACGTCAGAATCTAAGCTTCAGAGTCTTGGTTACGTCG
ACTATGTCAGCAATCTACCAGAGTCAACTCAACAGATGCTCAGCGACCAT
CAATGTCACCACTACATCCCATGGAGAGCAGTGTGGAAGGGCAATTCAAT
TAGCACCCCTTGTCGTATTGTCTTTGATGCATCATCAACAACATCGTCGG
GATATAGTTTAAACGATCTTCTCGCTAAAGGGAGGAATACCCTCAACAGG
CTTCAGGAAGTCTTGATCCGATTCTTCATTCACCCTATCGCTATGCACAC
AGATATCAAGAAGATGTATAACACCATCAAATTGGACGAATCTCATTGGT
GCTATCAACGCTACGTTTGGGAAGCCAACCTTGACCCATCCAAAATCCCT
CAA
Run BLAST on NCBI

protein sequence of TCONS_00064792-protein

>TCONS_00064792-protein ID=TCONS_00064792-protein|Name=TCONS_00064792-protein|organism=Clytia hemisphaerica|type=polypeptide|length=134bp
EDILTSESKLQSLGYVDYVSNLPESTQQMLSDHQCHHYIPWRAVWKGNSI
STPCRIVFDASSTTSSGYSLNDLLAKGRNTLNRLQEVLIRFFIHPIAMHT
DIKKMYNTIKLDESHWCYQRYVWEANLDPSKIPQ
Run BLAST on NCBI

transcript from alignment at scaffold_423:135059..135461

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064792 ID=TCONS_00064792|Name=TCONS_00064792|organism=Clytia hemisphaerica|type=transcript|length=403bp|location=Sequence derived from alignment at scaffold_423:135059..135461 (Clytia hemisphaerica)
TTGAGGGATTTTGGATGGGTCAAGGTTGGCTTCCCAAACGTAGCGTTGAT
AGCACCAATGAGATTCGTCCAATTTGATGGTGTTATACATCTTCTTGATA
TCTGTGTGCATAGCGATAGGGTGAATGAAGAATCGGATCAAGACTTCCTG
AAGCCTGTTGAGGGTATTCCTCCCTTTAGCGAGAAGATCGTTTAAACTAT
ATCCCGACGATGTTGTTGATGATGCATCAAAGACAATACGACAAGGGGTG
CTAATTGAATTGCCCTTCCACACTGCTCTCCATGGGATGTAGTGGTGACA
TTGATGGTCGCTGAGCATCTGTTGAGTTGACTCTGGTAGATTGCTGACAT
AGTCGACGTAACCAAGACTCTGAAGCTTAGATTCTGACGTAAGGATATCT
TCC

Coding sequence (CDS) from alignment at scaffold_423:135059..135461

>TCONS_00064792 ID=TCONS_00064792|Name=TCONS_00064792|organism=Clytia hemisphaerica|type=CDS|length=402bp|location=Sequence derived from alignment at scaffold_423:135059..135461 (Clytia hemisphaerica)
TTGAGGGATTTTGGATGGGTCAAGGTTGGCTTCCCAAACGTAGCGTTGAT
AGCACCAATGAGATTCGTCCAATTTGATGGTGTTATACATCTTCTTGATA
TCTGTGTGCATAGCGATAGGGTGAATGAAGAATCGGATCAAGACTTCCTG
AAGCCTGTTGAGGGTATTCCTCCCTTTAGCGAGAAGATCGTTTAAACTAT
ATCCCGACGATGTTGTTGATGATGCATCAAAGACAATACGACAAGGGGTG
CTAATTGAATTGCCCTTCCACACTGCTCTCCATGGGATGTAGTGGTGACA
TTGATGGTCGCTGAGCATCTGTTGAGTTGACTCTGGTAGATTGCTGACAT
AGTCGACGTAACCAAGACTCTGAAGCTTAGATTCTGACGTAAGGATATCT
TC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040634XLOC_040634Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064792-exon-scaffold_423-1491911889:135059..135461TCONS_00064792-exon-scaffold_423-1491911889:135059..135461Clytia hemisphaericaexon
TCONS_00064792-exon-scaffold_423-1510915933:135059..135461TCONS_00064792-exon-scaffold_423-1510915933:135059..135461Clytia hemisphaericaexon
TCONS_00064792-exon-scaffold_423-1575043694:135059..135461TCONS_00064792-exon-scaffold_423-1575043694:135059..135461Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064792-proteinTCONS_00064792-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_423supercontigscaffold_423:135059..135461 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.00162	2.52584	2.61173	1.24755	4.39717	4.53901	0.103608	1.66843	0	1.12306	2.02553	0	1.1249	2.32284	1.22729	1.06925	0.275161	1.27335	0.17148	0.244519	1.17883	0.482871	0.840958	0	0	0.779595	0.83497	0	0	1.70222
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064792 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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