TCONS_00064796 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064796
Unique NameTCONS_00064796
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length920

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064796 ID=TCONS_00064796|Name=TCONS_00064796|organism=Clytia hemisphaerica|type=transcript|length=920bp
tactttccagtctcttgtttggtgtttttctgactttctggttctttgtg
agttattttctatgttttctaacttactgaatgacttaccgacaggtCGC
CCACCGGTGGGATTCAAACCCActtaaatgcaaagttccgNattttgctg
atgacacacACCTCCTTAATCTTTCCCAAACCGTTTGGTCTCTCTGTGGT
AGAGTAAACTCTGACCTCAGAGTTCTCGTCAGCTGGCTCAATGCAAACAA
AATATCTCTAAATGCCAGCAAGACAGAATATATTATCTTTAGGTCGAACA
GGCGTCCCCTTGACACTATTCCAAGGATAGTCTCAGGTCAACGCCTCACT
CCAAGCAAAACCATAAAATACCTAGGTGTCCATCTGGACTAACATCTCTC
TTGGAAACAACATGTTGCCGTTGTTGCCACTAAACTACGTCGAGCTAATG
AAGCTATCTCCAAACTTCGCTACTACCTTCCTCTTCCAAATCTTATCAAT
GTATACCATGCTATCTTCTCTTCTCACATTCGCTATGCTTGTCAAACATG
GGGTCTTTGTGATAATACTGTGACACATAGAATCCATGTCCTGCAAAATA
CAGCAATCAGGCTTATGACTTTTCAAGAACCCAGAGCATCGGTTACCGTA
ACTTACTCTGAACTCAAAATCCTAAAATTCTTCGATCTTGTTGAAACTCT
TAACATCATGTTTATATATCGCTATCTCAACAGATATCTGCCTTCCGATT
GCCTTTCCACTTTCTCCATTTCCTTAATCCCTCATGACATTGAGACTAGA
GCTAACAATATCAGCCTTCTCTTCATCAAAAACGTTAACACAACAACCTT
TGGCCTTCACTCGCTTACACGGCTAGCTTCACGACAGTGGAATAACTTAC
AAGAGCATCACGATGACAAA
Run BLAST on NCBI

protein sequence of TCONS_00064796-protein

>TCONS_00064796-protein ID=TCONS_00064796-protein|Name=TCONS_00064796-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
MTYRQVAHRWDSNPLKCKVPXFADDTHLLNLSQTVWSLCGRVNSDLRVLV
SWLNANKISLNASKTEYIIFRSNRRPLDTIPRIVSGQRLTPSKTIKYLGV
HLD
Run BLAST on NCBI

transcript from alignment at scaffold_423:203052..203971

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064796 ID=TCONS_00064796|Name=TCONS_00064796|organism=Clytia hemisphaerica|type=transcript|length=920bp|location=Sequence derived from alignment at scaffold_423:203052..203971 (Clytia hemisphaerica)
TTTGTCATCGTGATGCTCTTGTAAGTTATTCCACTGTCGTGAAGCTAGCC
GTGTAAGCGAGTGAAGGCCAAAGGTTGTTGTGTTAACGTTTTTGATGAAG
AGAAGGCTGATATTGTTAGCTCTAGTCTCAATGTCATGAGGGATTAAGGA
AATGGAGAAAGTGGAAAGGCAATCGGAAGGCAGATATCTGTTGAGATAGC
GATATATAAACATGATGTTAAGAGTTTCAACAAGATCGAAGAATTTTAGG
ATTTTGAGTTCAGAGTAAGTTACGGTAACCGATGCTCTGGGTTCTTGAAA
AGTCATAAGCCTGATTGCTGTATTTTGCAGGACATGGATTCTATGTGTCA
CAGTATTATCACAAAGACCCCATGTTTGACAAGCATAGCGAATGTGAGAA
GAGAAGATAGCATGGTATACATTGATAAGATTTGGAAGAGGAAGGTAGTA
GCGAAGTTTGGAGATAGCTTCATTAGCTCGACGTAGTTTAGTGGCAACAA
CGGCAACATGTTGTTTCCAAGAGAGATGTTAGTCCAGATGGACACCTAGG
TATTTTATGGTTTTGCTTGGAGTGAGGCGTTGACCTGAGACTATCCTTGG
AATAGTGTCAAGGGGACGCCTGTTCGACCTAAAGATAATATATTCTGTCT
TGCTGGCATTTAGAGATATTTTGTTTGCATTGAGCCAGCTGACGAGAACT
CTGAGGTCAGAGTTTACTCTACCACAGAGAGACCAAACGGTTTGGGAAAG
ATTAAGGAGGTgtgtgtcatcagcaaaatNcggaactttgcatttaagTG
GGTTTGAATCCCACCGGTGGGCGacctgtcggtaagtcattcagtaagtt
agaaaacatagaaaataactcacaaagaaccagaaagtcagaaaaacacc
aaacaagagactggaaagta

Coding sequence (CDS) from alignment at scaffold_423:203052..203971

>TCONS_00064796 ID=TCONS_00064796|Name=TCONS_00064796|organism=Clytia hemisphaerica|type=CDS|length=312bp|location=Sequence derived from alignment at scaffold_423:203052..203971 (Clytia hemisphaerica)
TTAGTCCAGATGGACACCTAGGTATTTTATGGTTTTGCTTGGAGTGAGGC
GTTGACCTGAGACTATCCTTGGAATAGTGTCAAGGGGACGCCTGTTCGAC
CTAAAGATAATATATTCTGTCTTGCTGGCATTTAGAGATATTTTGTTTGC
ATTGAGCCAGCTGACGAGAACTCTGAGGTCAGAGTTTACTCTACCACAGA
GAGACCAAACGGTTTGGGAAAGATTAAGGAGGTgtgtgtcatcagcaaaa
tNcggaactttgcatttaagTGGGTTTGAATCCCACCGGTGGGCGacctg
tcggtaagtcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040638XLOC_040638Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064796-proteinTCONS_00064796-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064796-exon-scaffold_423-1491911889:203052..203971TCONS_00064796-exon-scaffold_423-1491911889:203052..203971Clytia hemisphaericaexon
TCONS_00064796-exon-scaffold_423-1510915933:203052..203971TCONS_00064796-exon-scaffold_423-1510915933:203052..203971Clytia hemisphaericaexon
TCONS_00064796-exon-scaffold_423-1575043694:203052..203971TCONS_00064796-exon-scaffold_423-1575043694:203052..203971Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_423supercontigscaffold_423:203052..203971 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.838025	0.701595	1.67359	2.15812	1.81224	1.34589	1.2123	1.98483	1.31779	0.810259	0.775787	0.888238	0.960066	0.657962	0.60161	0.719389	0.711252	0.70135	0.292361	0.608062	1.14668	0.534009	0.145404	0.110643	0.720581	1.52097	0.719975	0.738222	0.689371	0.829602
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064796 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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