TCONS_00064797 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064797
Unique NameTCONS_00064797
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length369

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064797 ID=TCONS_00064797|Name=TCONS_00064797|organism=Clytia hemisphaerica|type=transcript|length=369bp
GTAATTAATTGAGGAAAGATTATTATAATTACCATAAATTGCGTTTCCCA
AATGACCTCACTCTTACACGCTTCATAATCTGACATCTTGTTATTTAGAA
TTTCCAAAAGACCGAGTCGCGATTACTTCATTAGTCCAAAATATGATTGG
TTGATAGATATGAGCCTGGTTTCCCCATCCACTCGGTAAAATATTCACCA
CCTTTCAGCCACCCTGGAGAGAAAGGGGCGGCAAAAAGAAGTAACTACGG
ATCCTTATGGAAACCAccccattttgaattttttttttaaacaagtgGCG
AAAACGGGGGAGAGTGTGCAGAGGAGAGTGCAGGCGAAAGACATTTACAA
TCACGCTCTTCGAAACTTG
Run BLAST on NCBI

transcript from alignment at scaffold_423:241682..242050

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064797 ID=TCONS_00064797|Name=TCONS_00064797|organism=Clytia hemisphaerica|type=transcript|length=369bp|location=Sequence derived from alignment at scaffold_423:241682..242050 (Clytia hemisphaerica)
CAAGTTTCGAAGAGCGTGATTGTAAATGTCTTTCGCCTGCACTCTCCTCT
GCACACTCTCCCCCGTTTTCGCcacttgtttaaaaaaaaaattcaaaatg
gggTGGTTTCCATAAGGATCCGTAGTTACTTCTTTTTGCCGCCCCTTTCT
CTCCAGGGTGGCTGAAAGGTGGTGAATATTTTACCGAGTGGATGGGGAAA
CCAGGCTCATATCTATCAACCAATCATATTTTGGACTAATGAAGTAATCG
CGACTCGGTCTTTTGGAAATTCTAAATAACAAGATGTCAGATTATGAAGC
GTGTAAGAGTGAGGTCATTTGGGAAACGCAATTTATGGTAATTATAATAA
TCTTTCCTCAATTAATTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040639XLOC_040639Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064797-exon-scaffold_423-1491911889:241682..242050TCONS_00064797-exon-scaffold_423-1491911889:241682..242050Clytia hemisphaericaexon
TCONS_00064797-exon-scaffold_423-1510915933:241682..242050TCONS_00064797-exon-scaffold_423-1510915933:241682..242050Clytia hemisphaericaexon
TCONS_00064797-exon-scaffold_423-1575043694:241682..242050TCONS_00064797-exon-scaffold_423-1575043694:241682..242050Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_423supercontigscaffold_423:241682..242050 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.298721	0.511729	0.245624	1.53948	1.95656	0.855229	1.60131	0.582961	0.476959	0.224648	1.1814	0.315	1.09598	1.00727	0.945837	0.665825	0.524575	0	0.892321	0.66045	0.313711	0	0.273306	1.71037	1.12207	0	0	0.492219	0.75224
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064797 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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