TCONS_00064801 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064801
Unique NameTCONS_00064801
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length687

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064801 ID=TCONS_00064801|Name=TCONS_00064801|organism=Clytia hemisphaerica|type=transcript|length=687bp
TTAATTTAAGAAAGCAACAATTCTGTACATGCATgcagtttaaaaaaaag
ttaatagAATTACGTGTTAAAGACATAGTAGACGAGACAGTATTGTAAAA
GATAAATCAAAACACAGGTAtgcacaattttttttcagttatcaatAACA
ATCGCTACGTAGAAACGAAGCCCAGGCTTAGCTTCCAAACATTATTTCTT
TATCAATTTACCCATCACAAAAAACATCAAAGAGCTCGCGTTGgtggatt
tttcaaaacaaattcctTACAAGCACGTTGAAATTGCAATCtaattaaaa
taagaaaatcacatccgaaaataataataatcacATTAATCACTCGAAAA
TATATTAATTATACAGCGCGTACTTGATAATTGGAAGTTCTTTTGCAATA
TTCGAAGCTCTATAACAACACAGTACAATTCAGTTAATTTACCATTTAAA
GCTTGACGAAATTCTCAAGGGAGAAACCTTCTCCTGCTCCACAAACCATG
ATAAGAACATCCTTAAAAAGTTCGACTCTCTTCTGATAGAGAGGGACCAT
TATCAATAGAACATCTATAgagtataaaagaaaaaaagggagATGTAAAA
AAAATCTCGTTTTATATAAGAGTTGACAAACCACGAGTAATTTTAAGGAA
GTGTAGTAAAATTAGACTCGATATTTTACAGAAAAAT
Run BLAST on NCBI

transcript from alignment at scaffold_423:300815..301501

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064801 ID=TCONS_00064801|Name=TCONS_00064801|organism=Clytia hemisphaerica|type=transcript|length=687bp|location=Sequence derived from alignment at scaffold_423:300815..301501 (Clytia hemisphaerica)
ATTTTTCTGTAAAATATCGAGTCTAATTTTACTACACTTCCTTAAAATTA
CTCGTGGTTTGTCAACTCTTATATAAAACGAGATTTTTTTTACATctccc
tttttttcttttatactcTATAGATGTTCTATTGATAATGGTCCCTCTCT
ATCAGAAGAGAGTCGAACTTTTTAAGGATGTTCTTATCATGGTTTGTGGA
GCAGGAGAAGGTTTCTCCCTTGAGAATTTCGTCAAGCTTTAAATGGTAAA
TTAACTGAATTGTACTGTGTTGTTATAGAGCTTCGAATATTGCAAAAGAA
CTTCCAATTATCAAGTACGCGCTGTATAATTAATATATTTTCGAGTGATT
AATgtgattattattattttcggatgtgattttcttattttaattaGATT
GCAATTTCAACGTGCTTGTAaggaatttgttttgaaaaatccacCAACGC
GAGCTCTTTGATGTTTTTTGTGATGGGTAAATTGATAAAGAAATAATGTT
TGGAAGCTAAGCCTGGGCTTCGTTTCTACGTAGCGATTGTTattgataac
tgaaaaaaaattgtgcaTACCTGTGTTTTGATTTATCTTTTACAATACTG
TCTCGTCTACTATGTCTTTAACACGTAATTctattaacttttttttaaac
tgcATGCATGTACAGAATTGTTGCTTTCTTAAATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040643XLOC_040643Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064801-exon-scaffold_423-1491911889:300815..301501TCONS_00064801-exon-scaffold_423-1491911889:300815..301501Clytia hemisphaericaexon
TCONS_00064801-exon-scaffold_423-1510915933:300815..301501TCONS_00064801-exon-scaffold_423-1510915933:300815..301501Clytia hemisphaericaexon
TCONS_00064801-exon-scaffold_423-1575043694:300815..301501TCONS_00064801-exon-scaffold_423-1575043694:300815..301501Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_423supercontigscaffold_423:300815..301501 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.371106	0.579019	0	0	1.50137	0.395468	0.190846	0.536004	0.12509	0.0774718	0	0.0988618	0.345535	0.0512631	0.126436	0.316598	0.278588	0.45687	1.02568	1.98149	2.58341	1.99515	1.53181	0.773688	0.159376	0.213359	1.62835	1.95505	1.07094	0.335728
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064801 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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