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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064807 ID=TCONS_00064807|Name=TCONS_00064807|organism=Clytia hemisphaerica|type=transcript|length=583bp
ctCAGTTGTAGAAGTTCGAGAAGTCGAACGGCTAACGGGCCAAACTATTC
AAGAAGTTGAGCAGATTGATCGAGTTGAGAGGACATCAAAATACGGAGAA
TCGTATGCGGTACAAAAAGGGTCCATTTGTtcattcaatgaaagaaaatt
caTCAAAGTCGAGGAGTTGTTTCAATTTANTCAAGAAGTTGAGCAGATTG
ATCGAGTTGAGAGGACATCAAAATACGGAGAATCGTATGCGGTACAAAAA
GGGTCCATTTGTtcattcaatgaaagaaaattcaTCAAAGTCGAGGAGTT
GTTTAAATTTGGAGCGTTCACAATGGCTACAGTATTGTTTTTCAATCTCT
ATTGTGACAAAGAAACAGGTATCTACTATGGTAAATGCAACGAAAATTTG
CCTAGAGGGGTCATCATGACTAATTCGATTCAGAAGCCTTCTGTGACTGC
GAGTGAAGATGATCGACTTTGGTTACTATCTAAGAAGCATTCGCTTGATT
TTGAATGGCTGAGTGAGCACACTAGATTATGAACATTATTTCATTTCACT
TTCTGTAGTTCAGAATGACCAATAGTTTTTTTT Run BLAST on NCBI protein sequence of TCONS_00064807-protein >TCONS_00064807-protein ID=TCONS_00064807-protein|Name=TCONS_00064807-protein|organism=Clytia hemisphaerica|type=polypeptide|length=176bp
SVVEVREVERLTGQTIQEVEQIDRVERTSKYGESYAVQKGSICSFNERKF
IKVEELFQFXQEVEQIDRVERTSKYGESYAVQKGSICSFNERKFIKVEEL
FKFGAFTMATVLFFNLYCDKETGIYYGKCNENLPRGVIMTNSIQKPSVTA
SEDDRLWLLSKKHSLDFEWLSEHTRL Run BLAST on NCBI transcript from alignment at scaffold_424:358..1217+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064807 ID=TCONS_00064807|Name=TCONS_00064807|organism=Clytia hemisphaerica|type=transcript|length=860bp|location=Sequence derived from alignment at scaffold_424:358..1217+ (Clytia hemisphaerica)
ctCAGTTGTAGAAGTTCGAGAAGTCGAACGGCTAACGGGCCAAACTATTC
AAGAAGTTGAGCAGATTGATCGAGTTGAGAGGACATCAAAATACGGAGAA
TCGTATGCGGTACAAAAAGGGTCCATTTGTtcattcaatgaaagaaaatt
caTCAAAGTCGAGGAGTTGTTTCAATTTANTCAAGAAGTTGAGCAGATTG
ATCGAGTTGAGAGGACATCAAAATACGGAGAATCGTATGCGGTACAAAAA
GGGTCCATTTGTtcattcaatgaaagaaaattcaTCAAAGTCGAGGAGTT
GTTTAAATTTGGAGCGTTCACAATGGCTACAGTATTGTTTTTCAATCTCT
ATTGTGACAAAGAAACAGGTACACTGGATGTTCTGGCATTTTTTGACATG
AATTTAAGTTCAAATGTCCTATACTCTTTGGGGCTTTAAATAAGAGATAa
gttaaaaagtacttttttaaaaagagaaattttagTGGCTATTTTCCAAC
AGATAATGTACTAGCTTGAGCATTTCTATAATTCCAGATAATTCTGCAAG
CCAGGCTGAAACAtccaaaaaataattcatgcGACAAAGAGATTTTGTgg
atttttttggcaatttgaATCCGACTATAAATTGCATCATTTTAGGTATC
TACTATGGTAAATGCAACGAAAATTTGCCTAGAGGGGTCATCATGACTAA
TTCGATTCAGAAGCCTTCTGTGACTGCGAGTGAAGATGATCGACTTTGGT
TACTATCTAAGAAGCATTCGCTTGATTTTGAATGGCTGAGTGAGCACACT
AGATTATGAACATTATTTCATTTCACTTTCTGTAGTTCAGAATGACCAAT
AGTTTTTTTT Coding sequence (CDS) from alignment at scaffold_424:358..1217+ >TCONS_00064807 ID=TCONS_00064807|Name=TCONS_00064807|organism=Clytia hemisphaerica|type=CDS|length=1062bp|location=Sequence derived from alignment at scaffold_424:358..1217+ (Clytia hemisphaerica)
tCAGTTGTAGAAGTTCGAGAAGTCGAACGGCTAACGGGCCAAACTATTCA
AGAAGTTGAGCAGATTGATCGAGTTGAGAGGACATCAAAATACGGAGAAT
CGTATGCGGTACAAAAAGGGTCCATTTGTtcattcaatgaaagaaaattc
aTCAAAGTCGAGGAGTTGTTTCAATTTANTCAAGAAGTTGAGCAGATTGA
TCGAGTTGAGAGGACATCAAAATACGGAGAATCGTATGCGGTACAAAAAG
GGTCCATTTGTtcattcaatgaaagaaaattcaTCAAAGTCGAGGAGTTG
TTTAAATTTGGAGCGTTCACAATGGCTACAGTATTGTTTTTCAATCTCTA
TTGTGACAAAGAAACAGGTATCTACTATGGTAAATGCAACGAAAATTTGC
CTAGAGGGGTCATCATGACTAATTCGATTCAGAAGCCTTCTGTGACTGCG
AGTGAAGATGATCGACTTTGGTTACTATCTAAGAAGCATTCGCTTGATTT
TGAATGGCTGAGTGAGCACACTAGATTATGAtCAGTTGTAGAAGTTCGAG
AAGTCGAACGGCTAACGGGCCAAACTATTCAAGAAGTTGAGCAGATTGAT
CGAGTTGAGAGGACATCAAAATACGGAGAATCGTATGCGGTACAAAAAGG
GTCCATTTGTtcattcaatgaaagaaaattcaTCAAAGTCGAGGAGTTGT
TTCAATTTANTCAAGAAGTTGAGCAGATTGATCGAGTTGAGAGGACATCA
AAATACGGAGAATCGTATGCGGTACAAAAAGGGTCCATTTGTtcattcaa
tgaaagaaaattcaTCAAAGTCGAGGAGTTGTTTAAATTTGGAGCGTTCA
CAATGGCTACAGTATTGTTTTTCAATCTCTATTGTGACAAAGAAACAGGT
ATCTACTATGGTAAATGCAACGAAAATTTGCCTAGAGGGGTCATCATGAC
TAATTCGATTCAGAAGCCTTCTGTGACTGCGAGTGAAGATGATCGACTTT
GGTTACTATCTAAGAAGCATTCGCTTGATTTTGAATGGCTGAGTGAGCAC
ACTAGATTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064807-exon-scaffold_424-1491911889:358..725 | TCONS_00064807-exon-scaffold_424-1491911889:358..725 | Clytia hemisphaerica | exon |
| TCONS_00064807-exon-scaffold_424-1510915933:358..725 | TCONS_00064807-exon-scaffold_424-1510915933:358..725 | Clytia hemisphaerica | exon |
| TCONS_00064807-exon-scaffold_424-1575043694:358..725 | TCONS_00064807-exon-scaffold_424-1575043694:358..725 | Clytia hemisphaerica | exon |
| TCONS_00064807-exon-scaffold_424-1491911889:1003..1217 | TCONS_00064807-exon-scaffold_424-1491911889:1003..1217 | Clytia hemisphaerica | exon |
| TCONS_00064807-exon-scaffold_424-1510915933:1003..1217 | TCONS_00064807-exon-scaffold_424-1510915933:1003..1217 | Clytia hemisphaerica | exon |
| TCONS_00064807-exon-scaffold_424-1575043694:1003..1217 | TCONS_00064807-exon-scaffold_424-1575043694:1003..1217 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_424 | supercontig | scaffold_424:358..1217 + |
Blast
The following BLAST results are available for this feature:
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