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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064833 ID=TCONS_00064833|Name=TCONS_00064833|organism=Clytia hemisphaerica|type=transcript|length=9935bp protein sequence of Laminin subunit A >TCONS_00064833-protein ID=TCONS_00064833-protein|Name=Laminin subunit A|organism=Clytia hemisphaerica|type=polypeptide|length=3255bp MNLLYCAALFLLSVVCAQEVLLPAYFDIAKGKKITSTATCGESFTPPKDARun BLAST on NCBI transcript from alignment at scaffold_425:35711..70448+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064833 ID=TCONS_00064833|Name=TCONS_00064833|organism=Clytia hemisphaerica|type=transcript|length=34738bp|location=Sequence derived from alignment at scaffold_425:35711..70448+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_425:35711..70448+ >TCONS_00064833 ID=TCONS_00064833|Name=TCONS_00064833|organism=Clytia hemisphaerica|type=CDS|length=429660bp|location=Sequence derived from alignment at scaffold_425:35711..70448+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00064833 vs. Swiss-Prot (Human)
Match: LAMA5 (Laminin subunit alpha-5 OS=Homo sapiens GN=LAMA5 PE=1 SV=8) HSP 1 Score: 1345.87 bits (3482), Expect = 0.000e+0 Identity = 814/2263 (35.97%), Postives = 1161/2263 (51.30%), Query Frame = 3
Query: 231 LLPAYFDIAKGKKITSTATCGESFTPPKDAPG---ELFCALADVPREHS-ASSKFKGFSCSYCVPGDYGDGKDGSQVRDHNIRNANDGSNRWWQSPPLSRGLQYRQVNVTLDLGQSFHVAYVIVKAANSPRPGVWALERSNDFGKTYTPWHYFASSPSECRSYFGVDPYLGIQDDDTVLCSTEYSQIPPFKDGEIHISLINGRPGAANFSYSPKLQEWTSATNVRXXXXXXXXXXXXXXXXXXXXXXVTRRYYYSIKDISIGGRCMCNGFSDDC--RPTTVAGKYECQCQYNTEGPTCNQCKPGYVQKQWKPRTALEKFECEKCNCHGHTDKCEYNAEIEARKLSLDIDGKYSGGGKCLDCQHNTRGVNCEECKPFFYKAEGVDITDPNACQPCGCNTTFSTGLCAEGTGQCQCKDKYSGKKCDQCNKGFYDFPEC--------------------KKCECDVDGSVDGECISN-SVGGCRCKEGYTGKFCDACKPGYFGFPNCEPCDCKTQYGAVSKNCDRKDGQCYCKQGYAGRQCDSCAIGSYEFPYCKDCGCDPAKTKDSICNQTTGICCCKENYKGPSCEECARGYYAHPSCFAXXXXXXXXXXXXXXXXXXXXRCKPNYEGKNCDRCAAGFYGFPNCQPCECDDEGSRGSTCNPTTGQCSCKSIYTGRQCDRCLSGFYGFPRCDQCSCNPAGTRSDDGGTFGDCSSSNIGQCVCKRNVEGIECNECKQGFFNLQENNPSGCSDCDCYQPGTNNGLISCTE-EGHCNCKTFVDGNKCKSCDDEYYRLSQTNMMGCTGCDCDIGGAYSNVCDKSNGQCQCRQNIIGRQCNRVEKEFYFPTLHQIKVELEDGKTEDGDAIRFDYQDKKFPDYSWKGFVFINEEQPSVVANVNIPLGSNYIVMFKYALNQISKVTGIVTATKGG---------AESQSELKGIVNFQSTQEEGNGFTTNFAKV-EEGSGSPLYFPLTSGEWKFTFNLKENSKLLLDHMILVPQQYTYADQLEKHAQIPCAVDTNDKLC--NVYKYIDLNKDGVKTIEA-ENPGRTRLNVPLFNDTEIMSKLDYKAMVQLSPQNSRHNILFNVEKPGKYIAIIQYYHDSDELKHMDFYIRS-RVSIQHGKAWMYKCKYTFGCRQTVLKQDSRSEFKFEIKDTKSHMITLSLRNGATVGVDS---------IILVPESEWSLDYATPKLYCTTKDG-------KCVQLKYNIPKDAILIE--------------------PKAEQG--EPRPSYLINPNVNVKYLSGEERSSGINVMDVDNIQAGRYHVVVHYYQPNHPSFEXXXXXXXXXXXXXXXRVLLESCPNLNGCRAPVKNYADQPYVFEAGKARFRIDIPKGKDAWLQYFMLIPEEPSNDRFKRGFKETSEKLKGPQPVDLSKDFIDQCSGMFFDVSADSSN-FCINSVFSLSTKFNNGALACDCDGQGSTSKYCQEFGGQCPCKPNVIGRQCTRCKVGYYGFPNCKPCNCAN--CDDITGQCTCPPGVIGENCDRCAPGTFGYDPVIGCQPCKCDSFGTGKDI-AVCDIKTGQCPCLPNYGSRKCSECAAGYYNYPVCEKCDCFSAGVTGSKCDSKTGDCICQDNVLGLTCDECPKGFFKTGSGRDQLCTKCWCQGRSTECKEALLYSASLETAESGVTV-TEPEV---EVFKGGDRFIVDISKIDVQIESTTPRIVYWNAPENFLGKQAGSYSGKLSYTFGYTLRGSGQSQPLNEIPDVLLKGAGFTIKSNKQVNRKVDENTAYEISLNERSWSH-EDGSEVTREQMXXXXXXXXXXQIRATHDVNIATSSLYDLKMDSAVERGED-LIFGLEECICPLEYAGPSCEECRDGYTRQKD----GSCKKCECSGKSDSCDPENGSCFNCTENTTGDKCNQCKPGFYGPK------CKPCECPSTSPSNNFANSCAVTGVANELVCQCREGYAGLRCEKCADGYYGNPTEEGGSCKPCSCSGNIDLGLT-GNCDSVTGECFKCLNNTDGDQCQHCKSGYYGDAVKEKNCQDCKCDSCGSNITPCDRTTGQCQCKPNVEGDRCNSCKPNTWGFDACQGCQDCNCGPASESEQCDLETGKCQCKPTVTGKRCDWCELGYYDYSANGCKKCNCPNGAYCDVKTGNCDC--GLLGEKCTLC-----------PVGHIIENGKCVECDSCVQNILNRINVLMYNITNVRNTLIPVGGLNNASLDAVNKTLQRLTKDANVFEGDLEV-LRKAIG 6674
L P YF++A+G +I ++ATCGE P + +P +L+C L P + +G C C + + H NA DG+ RWWQSPPLSRGL+Y +VNVTLDLGQ FHVAYV++K ANSPRP +W LERS DFG+TY PW +FASS +C FG I DD +C+TEYS+I P ++GEI +SL+NGRPGA NFSYSP L+E+T ATNVRLR L TLL L+ +L DPTVTRRYYYSIKDISIGGRC+C+G +D C + T + +C CQ+NT G TC++C PG+ Q+ WKP TA EC+ CNC+GH C Y+ E++ R+ S +DG Y GGG C+DCQH+T GVNCE C P FY++ + P+ C+ C C + F+ G C + TG+C C+ +SG++CD C +GF FP C C+C G+ C + VG C CK + G C+ C PG++G P C+PC C + G CD GQC C+ G+ G CD CA G + FP C+ CGC PA T C++ G C C+ + GP C+ C GY+ P+C A + G CRC+P Y G C C+ GF+GFP+C PC C EGS + C+P +GQCSC+ TG +CD C+ G Y FP C+ SC+PAG D + + C+C+ +VEG C+ CK GF+ L +NP GC+ C C GT G+ C G C CK V G C SC D ++ L Q + GC C CDIGGA C+ G C+CR N G C+ ++ Y P LH +++ELE+ T +G A+RF + +F ++SW+G+ + QP +VA +N+ + ++F+Y V+G V+ + G A+SQ V F + E F V + G G P F L G W E +LLD+++L+P Y A L+ C + + N Y L DG + E R ++P TE +S + ++ + + + V +PG+Y +++Y ++ D + + + + + + Q G ++ C Y+ CR T +DT+ H+ L + A+V + + + LVP E+S ++ P++ C + G C+ ++ P I++ P PRP ++P+ L E +++ + V + GRY ++H YQP HP+F + +G CP+ GCR V + + +PKG+ WL Y +++PE + + R +P+D S DFI C+ + +S SS+ FC N+ SLS +NNGA C C G+T C+ FGGQCPC +VIGR C+RC GY+GFPNC+PC+C CD++TGQC CPP I +C C P TFG P++GC+ C C G + CD +GQC C PN R+C C+ G++ YP C CDC AG CD TG C C++NV G CD+C G F + + CT+C+C G + C+ + E V + T+ +V E G + D+ + + P + YW AP ++LG + SY G L Y + P+ PDV+L+G +I + ++ L E ++ H E + V+RE+++++L+ L+ +QIRA + L + ++ A G+ L +E C+CP Y G SC+EC G+ R G C C+C G SD C P +G C +C NT G C +C+ GF + C C CP + PSNNFA C + G + C C+ GYAG CE+CA G++GNP G SC+PC CSGN D L +CD +TG C CL +T G +C+ C G+YG+A+ NC C C CG+ CD +G C CK V G RC+ C+ +GFD C GC+ C CGPA+E +C ++G+C C+P G +C C GY+ GC++C CP G CD TG C+C GL GE+C C PVGH I C CD CV VL+ + L+P ++A + RL + N DL+ LR +G
Sbjct: 45 LHPPYFNLAEGARIAASATCGEE-APARGSPRPTEDLYCKLVGGPVAGGDPNQTIRGQYCDICTAANSN--------KAHPASNAIDGTERWWQSPPLSRGLEYNEVNVTLDLGQVFHVAYVLIKFANSPRPDLWVLERSMDFGRTYQPWQFFASSKRDCLERFGPQTLERITRDDAAICTTEYSRIVPLENGEIVVSLVNGRPGAMNFSYSPLLREFTKATNVRLRFLRTNTLLGHLMGKALRDPTVTRRYYYSIKDISIGGRCVCHGHADACDAKDPTDPFRLQCTCQHNTCGGTCDRCCPGFNQQPWKPATANSANECQSCNCYGHATDCYYDPEVDRRRASQSLDGTYQGGGVCIDCQHHTTGVNCERCLPGFYRSPNHPLDSPHVCRRCNCESDFTDGTCEDLTGRCYCRPNFSGERCDVCAEGFTGFPSCYPTPSSSNDTREQVLPAGQIVNCDCSAAGTQGNACRKDPRVGRCLCKPNFQGTHCELCAPGFYG-PGCQPCQCSSP-GVADDRCDPDTGQCRCRVGFEGATCDRCAPGYFHFPLCQLCGCSPAGTLPEGCDE-AGRCLCQPEFAGPHCDRCRPGYHGFPNCQA-CTCDPRGALDQLCGAGGLCRCRPGYTGTACQECSPGFHGFPSCVPCHCSAEGSLHAACDPRSGQCSCRPRVTGLRCDTCVPGAYNFPYCEAGSCHPAGLAPVDPAL----PEAQV-PCMCRAHVEGPSCDRCKPGFWGLSPSNPEGCTRCSCDLRGTLGGVAECQPGTGQCFCKPHVCGQACASCKDGFFGLDQADYFGCRSCRCDIGGALGQSCEPRTGVCRCRPNTQGPTCSEPARDHYLPDLHHLRLELEEAATPEGHAVRFGFNPLEFENFSWRGYAQMAPVQPRIVARLNLTSPDLFWLVFRYVNRGAMSVSGRVSVREEGRSATCANCTAQSQP-----VAFPPSTEPA------FITVPQRGFGEP--FVLNPGTWALRV---EAEGVLLDYVVLLPSAYYEAALLQLRVTEACTYRPSAQQSGDNCLLYTHLPLDGFPSAAGLEALCRQDNSLPRPCPTEQLSP-SHPPLITCTGSDVDVQLQVAVPQPGRYALVVEYANE-DARQEVGVAVHTPQRAPQQGLLSLHPCLYSTLCRGTA-------------RDTQDHLAVFHLDSEASVRLTAEQARFFLHGVTLVPIEEFSPEFVEPRVSCISSHGAFGPNSAACLPSRFPKPPQPIILRDCQVIPLPPGLPLTHAQDLTPAMSPAGPRPRPPTAVDPDAEPTLLR-EPQATVVFTTHVPTL--GRYAFLLHGYQPAHPTFPVEVLINAGRVWQGHANASF--CPHGYGCRTLVVCEGQALLDVTHSELTVTVRVPKGRWLWLDYVLVVPENVYSFGYLR-----------EEPLDKSYDFISHCAAQGYHISPSSSSLFCRNAAASLSLFYNNGARPCGCHEVGATGPTCEPFGGQCPCHAHVIGRDCSRCATGYWGFPNCRPCDCGARLCDELTGQCICPPRTIPPDCLLCQPQTFGCHPLVGCEECNCSGPGIQELTDPTCDTDSGQCKCRPNVTGRRCDTCSPGFHGYPRCRPCDCHEAGTAPGVCDPLTGQCYCKENVQGPKCDQCSLGTFSLDAANPKGCTRCFCFGATERCRSSSYTRQEFVDMEGWVLLSTDRQVVPHERQPGTEMLRADLRHVPEAVPEAFPEL-YWQAPPSYLGDRVSSYGGTLRYELHSETQRGDVFVPMESRPDVVLQGNQMSITFLEPAYPTPGHVHRGQLQLVEGNFRHTETRNTVSREELMMVLASLEQLQIRALFSQISSAVFLRRVALEVASPAGQGALASNVELCLCPASYRGDSCQECAPGFYRDVKGLFLGRCVPCQCHGHSDRCLPGSGVCVDCQHNTEGAHCERCQAGFVSSRDDPSAPCVSCPCPLSVPSNNFAEGCVLRGGRTQ--CLCKPGYAGASCERCAPGFFGNPLVLGSSCQPCDCSGNGDPNLLFSDCDPLTGACRGCLRHTTGPRCEICAPGFYGNALLPGNCTRCDCTPCGTEA--CDPHSGHCLCKAGVTGRRCDRCQEGHFGFDGCGGCRPCACGPAAEGSECHPQSGQCHCRPGTMGPQCRECAPGYWGLPEQGCRRCQCPGG-RCDPHTGRCNCPPGLSGERCDTCSQQHQVPVPGGPVGHSIH---CEVCDHCV--------VLLLDDLERAGALLPAIHEQLRGINASSMAWARLHR-LNASIADLQSQLRSPLG 2224 The following BLAST results are available for this feature:
BLAST of TCONS_00064833 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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