|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064859 ID=TCONS_00064859|Name=TCONS_00064859|organism=Clytia hemisphaerica|type=transcript|length=1350bp
AAAACACAATGAGTTGTGGAATTCTCTCGTCATCTCCTTATGACTATCGA
ATTGGAGAGTGAACTTTCACAACCTTGGCTAGAATGCTAAAAAGATGACA
AAGAGAAACAAAAGCGAAACTTCTTGGCTATGCTTGCAAGCTGAAAGTCC
ACAAGTTATTTTGTTTGTATCCAAAATGTTGGAGAACAATAATTTATTGA
TGGTGCCAGATGCTTTTCACAACAACAGGCACATAAAGTCAACGAAAACA
CAAGAAGGTTTGCCTCGTTTCCCGAAACTGAAGAAGAATCGAANGACTTT
CCTGTCTCGggtgtttattaaattttttcttttttaggagGTGCGTTTAC
TTAAGGGGGTGTTTAAAAGatgggggcgtttattcgaagaacttggaaaa
acctttttttttcattttaagagtAATAAAAACTAAAACACAATGAGTTG
TGGAATTCTCTCGTCATCTCCTTATGACTATCGAATTGGAGAGTGAACTT
TCACAACCTTGGCTAGAATGCTAAAAAGATGACAAAGAGAAACAAAAGCG
AAACTTCTTGGCTATGCTTGCAAGCTGAAAGTCCACAAGGTTAGTACTAT
TGAGTTATAACAGCGATACAATGGAGAGCCATTCTCACTCGTTACAGGGT
ANATGTCACTGGTATCTGAATGGTACACTGGTTGACCACGAATCAAGTAA
TGGTCGGATTTACTCAAAAGATGGTGGTAAAACATTAGTCATTTTATCAC
TTCGTGAACAGGACCACGGAAAGTTAGTCATGGTCGCACGAAATCCTTTC
GGAAAAACGAAAACAAGCTGCAGGTTGAACATAGTGGATAATATTGGAGA
AAACAAGGACAAATCTGAAAAACTGAAGAAggagagcaaagtagacaaat
TGGATCCCATTCCTGAAAGCAAAGTGGATATTGAATTAACGCATTTTTCA
CTTCATAACGAACAAAGAAGACATTCTAAAACGAAGAACATTCAATTATC
GAGGAGCTATTAGTATGCAATCAACCTCTTATTATAAACAAGGATCTCCT
TTGAGAGCTCTATAGCCCGCCTTCTGTGTTATACACAATAATTAGAGCTA
TTTAAAACTTTCATAATTCAAATGAGCCTAATGTTCATTACACACATtat
tcaaaagaagaaaatacgATTAACGACGGGTATAAAGCTAACATTTCAgt
atttttaaattattctGTAACTTGTAAattattttattgtaaattttgtg
gtttttattttttgtaaattcacCTTTCACAATATTTGAGTTTTATCAAC
AAACATTTATAAAGCGTCCATTTTTATAAACCCTATTTGGTAATCCGCAA Run BLAST on NCBI transcript from alignment at scaffold_425:353624..355678+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064859 ID=TCONS_00064859|Name=TCONS_00064859|organism=Clytia hemisphaerica|type=transcript|length=2055bp|location=Sequence derived from alignment at scaffold_425:353624..355678+ (Clytia hemisphaerica)
AAAACACAATGAGTTGTGGAATTCTCTCGTCATCTCCTTATGACTATCGA
ATTGGAGAGTGAACTTTCACAACCTTGGCTAGAATGCTAAAAAGATGACA
AAGAGAAACAAAAGCGAAACTTCTTGGCTATGCTTGCAAGCTGAAAGTCC
ACAAGGTTAGTACTATTGAGTTATAACAGCGATACAATGGAGAGCCATTC
TCACTCGTTACAGGGTATTCTATTATCTTAAAAATTTCCGTTTTCTATTC
TTTGTTTTGTAAAGAATCCTCATATGTAATCAGCATCTAATTACTACATG
TATAATAGCATTAATTATATAAATGGTGTAAGTCGTTATCAGTTAGTGTC
GAGTATTTCATAAAGCAGAAGTAAAAACTGATAGCGTACATAGTTGATTA
TTTCGTTCTGAAAAAGGCTTCACACAGCAACATTCCACATAGTTATTTTG
TTTGTATCCAAAATGTTGGAGAACAATAATTTATTGATGGTGCCAGATGC
TTTTCACAACAACAGGCACATAAAGTCAACGAAAACACAAGAAGGTAAAA
AGATTAAGATTTTCAGCCGCAAATTTCACTACATTTTCATAcctattttg
agattttggccCCTGCGTGAGCGTCATACGTTTTATTCATTCTCAGAGtc
ttaaaatcttttgaagTTAACCTTTTTTGATCAAGTCTGTTCCACTAGGA
AACaggaaaagatttttaaagtttcCCTCTCCAATAATACTCTTGAGTTT
TAATACTGTAGTTTGTTGTTCTATAATATACCATTTTTCCAGTATGCCAT
CTCCCATTCTACCAAAGGTGACATAAAAGATTTGGGTATTTTCGAACCTA
TTGTGAAAGGTGTAAAATTGGTACAAAATTCAAAAGAAGGGGGTATCATC
CATGTCAGTTTGGTATAAAAATCGCAGTTGTTGCTCAATAACTAATCATC
TCAATTTTTTAGGTTTGCCTCGTTTCCCGAAACTGAAGAAGAATCGAANG
ACTTTCCTGTCTCGggtgtttattaaattttttcttttttaggagGTGCG
TTTACTTAAGGGGGTGTTTAAAAGatgggggcgtttattcgaagaacttg
gaaaaacctttttttttcattttaagagtAATAAAAACTAAAACACAATG
AGTTGTGGAATTCTCTCGTCATCTCCTTATGACTATCGAATTGGAGAGTG
AACTTTCACAACCTTGGCTAGAATGCTAAAAAGATGACAAAGAGAAACAA
AAGCGAAACTTCTTGGCTATGCTTGCAAGCTGAAAGTCCACAAGGTTAGT
ACTATTGAGTTATAACAGCGATACAATGGAGAGCCATTCTCACTCGTTAC
AGGGTANATGTCACTGGTATCTGAATGGTACACTGGTTGACCACGAATCA
AGTAATGGTCGGATTTACTCAAAAGATGGTGGTAAAACATTAGTCATTTT
ATCACTTCGTGAACAGGACCACGGAAAGTTAGTCATGGTCGCACGAAATC
CTTTCGGAAAAACGAAAACAAGCTGCAGGTTGAACATAGTGGATAATATT
GGAGAAAACAAGGACAAATCTGAAAAACTGAAGAAggagagcaaagtaga
caaatTGGATCCCATTCCTGAAAGCAAAGTGGATATTGAATTAACGCATT
TTTCACTTCATAACGAACAAAGAAGACATTCTAAAACGAAGAACATTCAA
TTATCGAGGAGCTATTAGTATGCAATCAACCTCTTATTATAAACAAGGAT
CTCCTTTGAGAGCTCTATAGCCCGCCTTCTGTGTTATACACAATAATTAG
AGCTATTTAAAACTTTCATAATTCAAATGAGCCTAATGTTCATTACACAC
ATtattcaaaagaagaaaatacgATTAACGACGGGTATAAAGCTAACATT
TCAgtatttttaaattattctGTAACTTGTAAattattttattgtaaatt
ttgtggtttttattttttgtaaattcacCTTTCACAATATTTGAGTTTTA
TCAACAAACATTTATAAAGCGTCCATTTTTATAAACCCTATTTGGTAATC
CGCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064859-exon-scaffold_425-1491911889:353624..353778 | TCONS_00064859-exon-scaffold_425-1491911889:353624..353778 | Clytia hemisphaerica | exon |
| TCONS_00064859-exon-scaffold_425-1510915933:353624..353778 | TCONS_00064859-exon-scaffold_425-1510915933:353624..353778 | Clytia hemisphaerica | exon |
| TCONS_00064859-exon-scaffold_425-1575043694:353624..353778 | TCONS_00064859-exon-scaffold_425-1575043694:353624..353778 | Clytia hemisphaerica | exon |
| TCONS_00064859-exon-scaffold_425-1491911889:354066..354167 | TCONS_00064859-exon-scaffold_425-1491911889:354066..354167 | Clytia hemisphaerica | exon |
| TCONS_00064859-exon-scaffold_425-1510915933:354066..354167 | TCONS_00064859-exon-scaffold_425-1510915933:354066..354167 | Clytia hemisphaerica | exon |
| TCONS_00064859-exon-scaffold_425-1575043694:354066..354167 | TCONS_00064859-exon-scaffold_425-1575043694:354066..354167 | Clytia hemisphaerica | exon |
| TCONS_00064859-exon-scaffold_425-1491911889:354586..355678 | TCONS_00064859-exon-scaffold_425-1491911889:354586..355678 | Clytia hemisphaerica | exon |
| TCONS_00064859-exon-scaffold_425-1510915933:354586..355678 | TCONS_00064859-exon-scaffold_425-1510915933:354586..355678 | Clytia hemisphaerica | exon |
| TCONS_00064859-exon-scaffold_425-1575043694:354586..355678 | TCONS_00064859-exon-scaffold_425-1575043694:354586..355678 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_425 | supercontig | scaffold_425:353624..355678 + |
Blast
The following BLAST results are available for this feature:
|
