|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064863 ID=TCONS_00064863|Name=TCONS_00064863|organism=Clytia hemisphaerica|type=transcript|length=1382bp
TGCCCTGGAGAGCTTTGTTGGAGAGATTACAGAAACTACGATGGAGCTAT
GTGGTATAATTAGCATGCGAACCGAAGGACGCTTTATCGTGGAACGGGAA
AACGAAAGACGGAACGCGAAATTTCTCGACGGATGACGGATACGTTGACG
TCGATATTCCATCAGATGACGAATATGAGAGCGAAAATGAACTGAATTTC
TCGTTAATCGACCCGAATATATTACGAGCGAGAATTATTCGTCATTTACC
GAGTGAAGTAACGACAAAGTACGGTTCACCGATCGTTTTAACTTGTTTAA
CGACTGTTTTATTTCCCGTTGATATCGAATGGACTCTAAACGGGACCATT
ATTGAACCGACGATCGATGGTCGGATATATTTTTCCGACGACCGACGACA
ATtattcattttgtatttaaCGACTGATGAACAAGGAACAATAGAAATGG
TCGCTAGAAATCGTTTCGGAAGCGAGAAGTCAATTTGTCAATTGAAAGTG
CAGAACAGGACTAGAGCGGTCACTGAACCTCTATTAAGCCTTCCGAACAC
TCTGGAACTGAGATgatcattttattatttaacATACAAACCTTTTTGTC
TTTTATCGTTAGGTTTCCAAGGCAAAGTTTCCTAAATTTAGATATGGTAA
TTCCCTTACTAAATCAAACACATCCATCATTAAGTATTCTACTGGTGAAA
AGGAACTGGGTTTGAGATTACCAGGGTTTGAGATATCAAAAGTCTGAATA
TCATTTTCTTGATGCGCTAACTGATACAAGGCTTTGGCATTATCACTCAA
TTTCATGGTGCTGCATTCAATTCATCTTGAAGCCAGTCTCTCTCGACGAG
AGAATGTTTTATAGCAAGTGAGTTTGTTTGAATTTCTCCGCTCTCTGTCT
GATATAGTTTTAATTTCTTTACTTTCCAACTCAACCTTAAATCCTAAGGT
GTTGAGCAACCAAACAACCTCTAAACTTATTAGGACTGCAATTTGAAAAT
AAGGTTCAAACCAAGGTTAACATAAGTATACATCAGAGCTGTGTTCGTTT
TCTAAAAGTAACAACCTCctgaatttttaatttattttttataaatttgt
acATAATATCACTAatgtatctattttttttttaatttactaAAACTGAA
AGTTAAATGATCTTTAAAGAACTGGAAAAATTTCTCAATGTGACATGACA
CCTCTGTCCCAAAGGCCCAATGGAACCTTTTCcctcaatggggatgaaat
tttgaaatcccaatggggataaaaattctactGATTGAAGTCAAAAACTC
TGGTGTCAATGGCTTTGGAGTACACAATTCTTCCTTCCTATTTAAAATGC
GTCGTGGGTAAAATCATAAAGCACCAAATTTC Run BLAST on NCBI transcript from alignment at scaffold_425:375491..377144+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064863 ID=TCONS_00064863|Name=TCONS_00064863|organism=Clytia hemisphaerica|type=transcript|length=1654bp|location=Sequence derived from alignment at scaffold_425:375491..377144+ (Clytia hemisphaerica)
TGCCCTGGAGAGCTTTGTTGGAGAGATTACAGAAACTACGATGGAGCTAT
GTGGTATAATTAGGTTATAAGTTGCgaattttatttacttttccgTCATT
TATCGTGTGATCAAAGGCTTTAATTTGTTTTCTTAATCTGGGACTTTTTG
ACACAAGACCTTACTTGCAGTACTAGAGTGGTATTGGTGCGTCTGATTAA
CTAAAGTCAGAAAAAGTGATCCCAGCTAACTTCGAGAGCAGAAAATTTGT
GAAGAAGGACTACATAAATAAGAAGAAATGGGGAGAAGTTTacaacaaca
gaaattcaaCCATTTCGTTTCTCGTTTTCTTTCAGCATGCGAACCGAAGG
ACGCTTTATCGTGGAACGGGAAAACGAAAGACGGAACGCGAAATTTCTCG
ACGGATGACGGATACGTTGACGTCGATATTCCATCAGATGACGAATATGA
GAGCGAAAATGAACTGAATTTCTCGTTAATCGACCCGAATATATTACGAG
CGAGAATTATTCGTCATTTACCGAGTGAAGTAACGACAAAGTACGGTTCA
CCGATCGTTTTAACTTGTTTAACGACTGTTTTATTTCCCGTTGATATCGA
ATGGACTCTAAACGGGACCATTATTGAACCGACGATCGATGGTCGGATAT
ATTTTTCCGACGACCGACGACAATtattcattttgtatttaaCGACTGAT
GAACAAGGAACAATAGAAATGGTCGCTAGAAATCGTTTCGGAAGCGAGAA
GTCAATTTGTCAATTGAAAGTGCAGAACAGGACTAGAGCGGTCACTGAAC
CTCTATTAAGCCTTCCGAACACTCTGGAACTGAGATgatcattttattat
ttaacATACAAACCTTTTTGTCTTTTATCGTTAGGTTTCCAAGGCAAAGT
TTCCTAAATTTAGATATGGTAATTCCCTTACTAAATCAAACACATCCATC
ATTAAGTATTCTACTGGTGAAAAGGAACTGGGTTTGAGATTACCAGGGTT
TGAGATATCAAAAGTCTGAATATCATTTTCTTGATGCGCTAACTGATACA
AGGCTTTGGCATTATCACTCAATTTCATGGTGCTGCATTCAATTCATCTT
GAAGCCAGTCTCTCTCGACGAGAGAATGTTTTATAGCAAGTGAGTTTGTT
TGAATTTCTCCGCTCTCTGTCTGATATAGTTTTAATTTCTTTACTTTCCA
ACTCAACCTTAAATCCTAAGGTGTTGAGCAACCAAACAACCTCTAAACTT
ATTAGGACTGCAATTTGAAAATAAGGTTCAAACCAAGGTTAACATAAGTA
TACATCAGAGCTGTGTTCGTTTTCTAAAAGTAACAACCTCctgaattttt
aatttattttttataaatttgtacATAATATCACTAatgtatctattttt
tttttaatttactaAAACTGAAAGTTAAATGATCTTTAAAGAACTGGAAA
AATTTCTCAATGTGACATGACACCTCTGTCCCAAAGGCCCAATGGAACCT
TTTCcctcaatggggatgaaattttgaaatcccaatggggataaaaattc
tactGATTGAAGTCAAAAACTCTGGTGTCAATGGCTTTGGAGTACACAAT
TCTTCCTTCCTATTTAAAATGCGTCGTGGGTAAAATCATAAAGCACCAAA
TTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064863-exon-scaffold_425-1491911889:375491..375553 | TCONS_00064863-exon-scaffold_425-1491911889:375491..375553 | Clytia hemisphaerica | exon |
| TCONS_00064863-exon-scaffold_425-1510915933:375491..375553 | TCONS_00064863-exon-scaffold_425-1510915933:375491..375553 | Clytia hemisphaerica | exon |
| TCONS_00064863-exon-scaffold_425-1575043694:375491..375553 | TCONS_00064863-exon-scaffold_425-1575043694:375491..375553 | Clytia hemisphaerica | exon |
| TCONS_00064863-exon-scaffold_425-1491911889:375826..377144 | TCONS_00064863-exon-scaffold_425-1491911889:375826..377144 | Clytia hemisphaerica | exon |
| TCONS_00064863-exon-scaffold_425-1510915933:375826..377144 | TCONS_00064863-exon-scaffold_425-1510915933:375826..377144 | Clytia hemisphaerica | exon |
| TCONS_00064863-exon-scaffold_425-1575043694:375826..377144 | TCONS_00064863-exon-scaffold_425-1575043694:375826..377144 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_425 | supercontig | scaffold_425:375491..377144 + |
Blast
The following BLAST results are available for this feature:
|
