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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064873 ID=TCONS_00064873|Name=TCONS_00064873|organism=Clytia hemisphaerica|type=transcript|length=2122bp
CTGGGACTGAAATTTTGATCTAATGcgaaaaatgattatttctctgaaat
taaagaaaaaacgGGAAGAAAGAAGGAATATTAGTTGGTGAATTTTATTc
gacaaacaaaaacaatctttGGCTGAAGCATTTACCTCCCTCATCATGTG
TCTTCAGGTTTTTGCAATAATACCGAACACCCTGGGTTCCATCGCAACTG
TTTTCTACATCCTCTCTGCATTAATGGCAGCCCTGGGTAATACATTTTGT
TTGATCGTCCTTTGGCGACCTTCtaatcgaacaaaatcgaacaAGATTCT
AACATCACTGGCATTGAGTGATTGTTGTGTGGGATATATGGTTACGCCAA
TGGCTGTATGGTTGATAAAGAATGGTTGGCAGATGACATCCAACACGTGC
GTTGTTGAAGATATTTACATGGTGCTCGGTATTTGGATGGTCGGCTGTTC
CTCCTCATCTGTTGTCTTCATCGCTTACGATCGCTATCTTCATCTCACCA
AACTCTCAAACTATAACATCTACATGACTAATAGGAAGCTTAACATCATC
ATCGCTTCTTATTGGTGCATTTTCTTTGGCCTTGCACTCGGTTGTGTATA
CAATGTTTATTATTTCGTATGGGCAAATTTCTGTTTTGTATTGGGCCCGA
TTACAGCACTAACCGTCTGTTATGTTATCATTTGGAGAGCTGTTAAACGA
AGCCGACAACGTATCGCGAATGCTGCATCGGGGACGTCGAAAGTGAACGA
GCAACGGCAAGTCAAGTTAACCAGGAAAGTTACTCTTCTGATCGCGTGTT
ATTTGGTGTTTCTTCTACCGATGCTTGCTTGGTTGATTATTGTACAAGTC
AACACCAACAATCCTGGAACCATCTCCTTGGAAGTTTTCACGCATCTTTT
TTTGGTTGTTAGTTTATTTGGTTTGTCTAATTCATGTTGTAACCCGGTTA
TTTATGTCATGAGTGACCCTATGTTTAAAAGAGCCTTCAAACGTATGTTG
GGAAAGACGAACATTCATAGCGAAATTTCAACCAGTCAGAAATCATCTGA
ACCCATTTCAACTACTGCTAACTGATTGGATTATGAAAACAAGTTGGAAG
AAATAAGGAACGGATTTACAAAATGCTACGTCATACTTCCCGATTTATCG
AAGTTAAAggtttctgtttgttttttgtaCGGACTGGCGAAATTGGGTAA
CGAAATCGAAAAAAGAATCCAAAATTTGTCAAAGGTTCTCAAAAAATGAG
TGTATACAGTATGGATTATTTTATGGTAAAAATAGTTAATGTACAAAGCg
taacaaaactaaaaaaaacagtACCTAGATGTTAAAacgtttgttgttgt
tttcttctaaaaatgaattGGTTCAAACCTCGCGTATTCAGACCCTTCCC
AGCATGCAATTCATTTATTCCACTTTTCATTTTGATGTAACGTACATGAT
TCTTGTGATATTCGTAAACTTTCTCTTGTAGGATTTTAACTGAATCTGAC
TCCATCATACCCGTCacgaagaaaaattttgatctgaAAGAAACTTTTCA
TATTCGTTTATTCACAAATATACAATCGCTAACATAATGACTTTCGGTTA
AGTCTAAATTACCTCGAAAGATTCATTTTCTTCAATCGGGGAATCGGGTT
TACTTTCGGATTCAATCGGAGACTccgaaatttcatttttccttgCCGAA
CCCTTCTCATTCTTTTCGTCAGACTCATGATTCGTTTTTGGCGATTCTGG
TTTGTTATCAGATTCCACATTTGGTGGATTGGACTTATCCTTCTCGTCGT
CTGAAGTATTGGAATTCTTCTCTTCGTCATTCGATAGATTGGATTCATCC
TTATCTACGTCTGACTTATTGGAACTATCTTCATCATCTTTAAAGGTTTC
ATTGATAACACCTGCATCCCCATTTTTTACTTTCCCGTTCTCGCTAATGT
TATTGTTCGATTccgttttcccgatttttcccCCGTCTGTCAAATCGGTT
TTGGATGGTTCGAATCCTGTCAATTGGGGTTCATTTATATCACCATTTGA
AGTCGATCCGTTTGCCTCAGCGTCATATTCATGAATGGATTTCATCTGAA
GATTGTTCTTGCCCGATTCtgc Run BLAST on NCBI protein sequence of TCONS_00064873-protein >TCONS_00064873-protein ID=TCONS_00064873-protein|Name=TCONS_00064873-protein|organism=Clytia hemisphaerica|type=polypeptide|length=309bp
MCLQVFAIIPNTLGSIATVFYILSALMAALGNTFCLIVLWRPSNRTKSNK
ILTSLALSDCCVGYMVTPMAVWLIKNGWQMTSNTCVVEDIYMVLGIWMVG
CSSSSVVFIAYDRYLHLTKLSNYNIYMTNRKLNIIIASYWCIFFGLALGC
VYNVYYFVWANFCFVLGPITALTVCYVIIWRAVKRSRQRIANAASGTSKV
NEQRQVKLTRKVTLLIACYLVFLLPMLAWLIIVQVNTNNPGTISLEVFTH
LFLVVSLFGLSNSCCNPVIYVMSDPMFKRAFKRMLGKTNIHSEISTSQKS
SEPISTTAN Run BLAST on NCBI transcript from alignment at scaffold_425:238748..241336- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064873 ID=TCONS_00064873|Name=TCONS_00064873|organism=Clytia hemisphaerica|type=transcript|length=2589bp|location=Sequence derived from alignment at scaffold_425:238748..241336- (Clytia hemisphaerica)
CTGGGACTGAAATTTTGATCTAATGCGAAAAATGATTATTTCTCTGAAAT
TAAAGAAAAAACGGGAAGAAAGAAGGAATATTAGTTGGTGAATTTTATTC
GACAAACAAAAACAATCTTTGGCTGAAGCATTTACCTCCCTCATCATGTG
TCTTCAGGTTTTTGCAATAATACCGAACACCCTGGGTTCCATCGCAACTG
TTTTCTACATCCTCTCTGCATTAATGGCAGCCCTGGGTAATACATTTTGT
TTGATCGTCCTTTGGCGACCTTCTAATCGAACAAAATCGAACAAGATTCT
AACATCACTGGCATTGAGTGATTGTTGTGTGGGATATATGGTTACGCCAA
TGGCTGTATGGTTGATAAAGAATGGTATGTACAGTGAAATCTCTTTAACT
CGAACCTCTATAACTCGATATCTCCCTAACTTGAACAATTTTTGCTAGTC
CCTTCAGTTAACAATGCCTTATAAACCTTACTCCATAACTCGTTCGTGTT
TGAGATATGTAGACTCAACTGTACTTCTTGTGGTATCAACATACATCTAA
CAAATAAACACAAGAAAAGGTATTTGACGTGTATAAGTCTATAAGCTACC
TTGGAATGCTATGATGTGCTTATTTCTCTATAGTTAGTGCTTAGAATAAA
CCCCATGGATGCATAAATACTATATATTGTAGGCTCAATGAACGGGGAAA
TTGTGTGAGTCATCGTCTGGTATAAAAACTCAAGTGAAATACTCCGTGGC
GCTTGGGTTCATCCACATAAAGACGTCGTAATGATTTTATACTTATAATG
TTTTATACTTATAATGTTTACATTGTTCGTTTTTTGAACAGGTTGGCAGA
TGACATCCAACACGTGCGTTGTTGAAGATATTTACATGGTGCTCGGTATT
TGGATGGTCGGCTGTTCCTCCTCATCTGTTGTCTTCATCGCTTACGATCG
CTATCTTCATCTCACCAAACTCTCAAACTATAACATCTACATGACTAATA
GGAAGCTTAACATCATCATCGCTTCTTATTGGTGCATTTTCTTTGGCCTT
GCACTCGGTTGTGTATACAATGTTTATTATTTCGTATGGGCAAATTTCTG
TTTTGTATTGGGCCCGATTACAGCACTAACCGTCTGTTATGTTATCATTT
GGAGAGCTGTTAAACGAAGCCGACAACGTATCGCGAATGCTGCATCGGGG
ACGTCGAAAGTGAACGAGCAACGGCAAGTCAAGTTAACCAGGAAAGTTAC
TCTTCTGATCGCGTGTTATTTGGTGTTTCTTCTACCGATGCTTGCTTGGT
TGATTATTGTACAAGTCAACACCAACAATCCTGGAACCATCTCCTTGGAA
GTTTTCACGCATCTTTTTTTGGTTGTTAGTTTATTTGGTTTGTCTAATTC
ATGTTGTAACCCGGTTATTTATGTCATGAGTGACCCTATGTTTAAAAGAG
CCTTCAAACGTATGTTGGGAAAGACGAACATTCATAGCGAAATTTCAACC
AGTCAGAAATCATCTGAACCCATTTCAACTACTGCTAACTGATTGGATTA
TGAAAACAAGTTGGAAGAAATAAGGAACGGATTTACAAAATGCTACGTCA
TACTTCCCGATTTATCGAAGTTAAAGGTTTCTGTTTGTTTTTTGTACGGA
CTGGCGAAATTGGGTAACGAAATCGAAAAAAGAATCCAAAATTTGTCAAA
GGTTCTCAAAAAATGAGTGTATACAGTATGGATTATTTTATGGTAAAAAT
AGTTAATGTACAAAGCGTAACAAAACTAAAAAAAACAGTACCTAGATGTT
AAAACGTTTGTTGTTGTTTTCTTCTAAAAATGAATTGGTTCAAACCTCGC
GTATTCAGACCCTTCCCAGCATGCAATTCATTTATTCCACTTTTCATTTT
GATGTAACGTACATGATTCTTGTGATATTCGTAAACTTTCTCTTGTAGGA
TTTTAACTGAATCTGACTCCATCATACCCGTCACGAAGAAAAATTTTGAT
CTGAAAGAAACTTTTCATATTCGTTTATTCACAAATATACAATCGCTAAC
ATAATGACTTTCGGTTAAGTCTAAATTACCTCGAAAGATTCATTTTCTTC
AATCGGGGAATCGGGTTTACTTTCGGATTCAATCGGAGACTCCGAAATTT
CATTTTTCCTTGCCGAACCCTTCTCATTCTTTTCGTCAGACTCATGATTC
GTTTTTGGCGATTCTGGTTTGTTATCAGATTCCACATTTGGTGGATTGGA
CTTATCCTTCTCGTCGTCTGAAGTATTGGAATTCTTCTCTTCGTCATTCG
ATAGATTGGATTCATCCTTATCTACGTCTGACTTATTGGAACTATCTTCA
TCATCTTTAAAGGTTTCATTGATAACACCTGCATCCCCATTTTTTACTTT
CCCGTTCTCGCTAATGTTATTGTTCGATTCCGTTTTCCCGATTTTTCCCC
CGTCTGTCAAATCGGTTTTGGATGGTTCGAATCCTGTCAATTGGGGTTCA
TTTATATCACCATTTGAAGTCGATCCGTTTGCCTCAGCGTCATATTCATG
AATGGATTTCATCTGAAGATTGTTCTTGCCCGATTCTGC Coding sequence (CDS) from alignment at scaffold_425:238748..241336- >TCONS_00064873 ID=TCONS_00064873|Name=TCONS_00064873|organism=Clytia hemisphaerica|type=CDS|length=1860bp|location=Sequence derived from alignment at scaffold_425:238748..241336- (Clytia hemisphaerica)
GTTGGCAGATGACATCCAACACGTGCGTTGTTGAAGATATTTACATGGTG
CTCGGTATTTGGATGGTCGGCTGTTCCTCCTCATCTGTTGTCTTCATCGC
TTACGATCGCTATCTTCATCTCACCAAACTCTCAAACTATAACATCTACA
TGACTAATAGGAAGCTTAACATCATCATCGCTTCTTATTGGTGCATTTTC
TTTGGCCTTGCACTCGGTTGTGTATACAATGTTTATTATTTCGTATGGGC
AAATTTCTGTTTTGTATTGGGCCCGATTACAGCACTAACCGTCTGTTATG
TTATCATTTGGAGAGCTGTTAAACGAAGCCGACAACGTATCGCGAATGCT
GCATCGGGGACGTCGAAAGTGAACGAGCAACGGCAAGTCAAGTTAACCAG
GAAAGTTACTCTTCTGATCGCGTGTTATTTGGTGTTTCTTCTACCGATGC
TTGCTTGGTTGATTATTGTACAAGTCAACACCAACAATCCTGGAACCATC
TCCTTGGAAGTTTTCACGCATCTTTTTTTGGTTGTTAGTTTATTTGGTTT
GTCTAATTCATGTTGTAACCCGGTTATTTATGTCATGAGTGACCCTATGT
TTAAAAGAGCCTTCAAACGTATGTTGGGAAAGACGAACATTCATAGCGAA
ATTTCAACCAGTCAGAAATCATCTGAACCCATTTCAACTACTGCTAACTG
AATGTGTCTTCAGGTTTTTGCAATAATACCGAACACCCTGGGTTCCATCG
CAACTGTTTTCTACATCCTCTCTGCATTAATGGCAGCCCTGGGTAATACA
TTTTGTTTGATCGTCCTTTGGCGACCTTCTAATCGAACAAAATCGAACAA
GATTCTAACATCACTGGCATTGAGTGATTGTTGTGTGGGATATATGGTTA
CGCCAATGGCTGTATGGTTGATAAAGAATGGTTGGCAGATGACATCCAAC
ACGTGCGTTGTTGAAGATATTTACATGGTGCTCGGTATTTGGATGGTCGG
CTGTTCCTCCTCATCTGTTGTCTTCATCGCTTACGATCGCTATCTTCATC
TCACCAAACTCTCAAACTATAACATCTACATGACTAATAGGAAGCTTAAC
ATCATCATCGCTTCTTATTGGTGCATTTTCTTTGGCCTTGCACTCGGTTG
TGTATACAATGTTTATTATTTCGTATGGGCAAATTTCTGTTTTGTATTGG
GCCCGATTACAGCACTAACCGTCTGTTATGTTATCATTTGGAGAGCTGTT
AAACGAAGCCGACAACGTATCGCGAATGCTGCATCGGGGACGTCGAAAGT
GAACGAGCAACGGCAAGTCAAGTTAACCAGGAAAGTTACTCTTCTGATCG
CGTGTTATTTGGTGTTTCTTCTACCGATGCTTGCTTGGTTGATTATTGTA
CAAGTCAACACCAACAATCCTGGAACCATCTCCTTGGAAGTTTTCACGCA
TCTTTTTTTGGTTGTTAGTTTATTTGGTTTGTCTAATTCATGTTGTAACC
CGGTTATTTATGTCATGAGTGACCCTATGTTTAAAAGAGCCTTCAAACGT
ATGTTGGGAAAGACGAACATTCATAGCGAAATTTCAACCAGTCAGAAATC
ATCTGAACCCATTTCAACTACTGCTAACTGAATGTGTCTTCAGGTTTTTG
CAATAATACCGAACACCCTGGGTTCCATCGCAACTGTTTTCTACATCCTC
TCTGCATTAATGGCAGCCCTGGGTAATACATTTTGTTTGATCGTCCTTTG
GCGACCTTCTAATCGAACAAAATCGAACAAGATTCTAACATCACTGGCAT
TGAGTGATTGTTGTGTGGGATATATGGTTACGCCAATGGCTGTATGGTTG
ATAAAGAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064873-exon-scaffold_425-1575043694:240963..241336 | TCONS_00064873-exon-scaffold_425-1575043694:240963..241336 | Clytia hemisphaerica | exon |
| TCONS_00064873-exon-scaffold_425-1575043694:238748..240495 | TCONS_00064873-exon-scaffold_425-1575043694:238748..240495 | Clytia hemisphaerica | exon |
| TCONS_00064873-exon-scaffold_425-1510915933:240963..241336 | TCONS_00064873-exon-scaffold_425-1510915933:240963..241336 | Clytia hemisphaerica | exon |
| TCONS_00064873-exon-scaffold_425-1510915933:238748..240495 | TCONS_00064873-exon-scaffold_425-1510915933:238748..240495 | Clytia hemisphaerica | exon |
| TCONS_00064873-exon-scaffold_425-1491911889:240963..241336 | TCONS_00064873-exon-scaffold_425-1491911889:240963..241336 | Clytia hemisphaerica | exon |
| TCONS_00064873-exon-scaffold_425-1491911889:238748..240495 | TCONS_00064873-exon-scaffold_425-1491911889:238748..240495 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_425 | supercontig | scaffold_425:238748..241336 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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