|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064919 ID=TCONS_00064919|Name=TCONS_00064919|organism=Clytia hemisphaerica|type=transcript|length=2614bpRun BLAST on NCBI transcript from alignment at scaffold_427:218341..243357+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064919 ID=TCONS_00064919|Name=TCONS_00064919|organism=Clytia hemisphaerica|type=transcript|length=25017bp|location=Sequence derived from alignment at scaffold_427:218341..243357+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
No biomaterial libraries express this feature.
Blast
BLAST of TCONS_00064919 vs. Swiss-Prot (Human)
Match: SC6A1 (Sodium- and chloride-dependent GABA transporter 1 OS=Homo sapiens GN=SLC6A1 PE=1 SV=2) HSP 1 Score: 390.193 bits (1001), Expect = 1.065e-123 Identity = 213/517 (41.20%), Postives = 318/517 (61.51%), Query Frame = 3
Query: 345 ATNTTIVNEEVISNGVEPLYPLGNDRYQSNVDDTQVRIEKLDEGRDAWGNKIEFILASIGLAVGLGNVWRFPYLCQKNGGGAFLIPYFIMMVIEGIPLFYIEFAIGQRFRRSAPGAWARIHPALKXXXXXXXXXXXXXXXYYVCVIAWSFLYLFVSMTDKLPWTIENCPRYSEYKPLADQCAANSSMCDAKNNFNECCMKDPQLYYFYRKALDVSVDITDSGSGFNGKLFGCLILSWVVVYACIVKGVKSSGKAVYFTATFPYVVLIILFFVGVTLPGAEIGLKALFTPKWEKLMEPEIWMDAATQMFFTLSLGFGALVSFASYMPRKNNCVRDAYTVVLINCGTSIFAAIVVFSILGHRQLITGNPVEKVGG-GPGLAFITFCDAFLQMPVSPLWSSLFFIMLILLGIDSEFGTLEGAIAPFYDM--NWIKMKKEFFTALTAILMMLIGIGLVTKSGFYVFQIFDDHSVS-LGLLFIAFFQVVAVSWVYGNDKFGNDIEYMTGKRPYLFWMICWKY 1883
ATN + V + IS V P+ ND+ ++ V Q + L + RD W + +F+++ +G A+GLGNVWRFPYLC KNGGGAFLIPYF+ ++ G+PLF +E ++GQ G W ++ P KG+G++ ++S + IYY+ +I+W+ YL+ S T LPW + P + D+C +N SM + N + F+ + + D D L L ++W++VY CI KGV +GK VYF+AT+PY++LIILFF GVTLPGA+ G+ TP + KL + E+W+DAATQ+FF+ LG G+L++ SY NN RD+ V IN TS+FA V+FSI+G +T + V GPGLAF+ + +A Q+P+SPLW+ LFF ML++LGIDS+F T+EG I D ++ ++E F A I+ LIG+ +T+ G YVF++FD +S S + LLF+ FF+ V++SW YG ++F ++I+ M G RP ++W +CW +
Sbjct: 2 ATNGSKVADGQISTEVSEA-PVANDKPKTLVVKVQKKAADLPD-RDTWKGRFDFLMSCVGYAIGLGNVWRFPYLCGKNGGGAFLIPYFLTLIFAGVPLFLLECSLGQYTSIGGLGVW-KLAPMFKGVGLAAAVLSFWLNIYYIVIISWAIYYLYNSFTTTLPWKQCDNPWNT------DRCFSNYSMVNTTN-------MTSAVVEFWERNMHQMTDGLDKPGQIRWPLAITLAIAWILVYFCIWKGVGWTGKVVYFSATYPYIMLIILFFRGVTLPGAKEGILFYITPNFRKLSDSEVWLDAATQIFFSYGLGLGSLIALGSYNSFHNNVYRDSIIVCCINSCTSMFAGFVIFSIVGFMAHVTKRSIADVAASGPGLAFLAYPEAVTQLPISPLWAILFFSMLLMLGIDSQFCTVEGFITALVDEYPRLLRNRRELFIAAVCIISYLIGLSNITQGGIYVFKLFDYYSASGMSLLFLVFFECVSISWFYGVNRFYDNIQEMVGSRPCIWWKLCWSF 502 The following BLAST results are available for this feature:
BLAST of TCONS_00064919 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.