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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064955 ID=TCONS_00064955|Name=TCONS_00064955|organism=Clytia hemisphaerica|type=transcript|length=1157bp
CACATTAACAAAATGTAAGTGTTAATGAATGATAAAGGTAAAAGTGCCTC
TTTTCCAACATTTCGACACATGATGAGATGGGCGTTTGAATAATCTTCAA
TAATCTTTGGAAAGGAAACATCAAACATCTATTAAGCAGTTCATTAGGCA
GACGAAAACAATAGGTCTTCCAATTGTTTAAtgagttttcttttgttttg
cagTGACAAACACGCGTTAAGAACGCGGCGAACAATTAAAATGGCTTCCT
TCATTCTATTTCCGATGAATTTTTCGCTCCACTGAACACATTCACTTCAC
CTCATCATCTATCGTCTCTTTTGTTCTGATTTCCGCCACGTCTCAAAGAC
ATCCAAACGACGTCCACCCCATTAAATTGACTTTTCATCCATCATCAGTT
TCTTGGGGTCAGATATTCGAAAAGACAAGAAGCGAAGGCGTGGTGACGCA
GAAAAGAAGCGACGTGACCGAATCAACAAATGTCTCGACCAATTGGAGGA
GCTCATTCCATACGTTCGACAGAAAAAGCTGTGCTCAAAAGTCGATAAAG
CAGAGGTTTTGGAATTGACCGTTCATTTTGTCAAAGAAACTTTATTCgaa
aaagaactttctttccGTAAAACGCACTTATCTTCAGTAGCAGAATATGA
GCGACGGAAATGGTTGGAACATTCACCTTCGGCTGATTACGAAAGACATT
TCTCCGCTCTTCGAAAGTCGCCCACCGAAAAATGTAACTGTGGATGTTCT
GACGGCCCTTCTGAAAAATTAAGTCCTCGTCACACTTCACCGATAACATC
TTCTTTTCCTTCATTTCAACCGCCCTTGGTGACCGTTCCTCCACTCGTGA
CGTCACCACTTCATCGCTGAATCGTATTGATAATAAAAGAACTTTTTATA
ACTTGAAAAACGAAAACTGTAAAATAAATTGCTTTCTTCGTGTTGATTAT
GGAGATGGATATTTTATAAATTTGCTACCACGGAAAAGCTTGTAAAGCAT
TCTGGTGTATCACCACAGCAAACTGGTTTTGTTGAAGAAAATCGAAAACT
TTTAGATGATTTTAATTTTATGAATATTTCTGTTAAATTATGATATTGTA
CATAAGAATTTTTACCTTAGCCTTTAAtgatcttcaaaatttgaaagaac
AATGAAT Run BLAST on NCBI transcript from alignment at scaffold_427:143721..145715- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064955 ID=TCONS_00064955|Name=TCONS_00064955|organism=Clytia hemisphaerica|type=transcript|length=1995bp|location=Sequence derived from alignment at scaffold_427:143721..145715- (Clytia hemisphaerica)
CACATTAACAAAATGTAAGTGTTAATGAATGATAAAGGTAAAAGTGCCTC
TTTTCCAACATTTCGACACATGATGAGATGGGCGTTTGAATAATCTTCAA
TAATCTTTGGAAAGGAAACATCAAACATCTATTAAGCAGTTCATTAGGCA
GACGAAAACAATAGGTCTTCCAATTGTTTAATGAGTTTTCTTTTGTTTTG
CAGTGACAAACACGCGTTAAGAACGCGGCGAACAATTAAAATGGCTTCCT
TCATTCTATTTCCGATGAATTTTTCGCTCCACTGAACACATTCACTTCAC
CTCATCATCTATCGTCTCTTTTGTTCTGATTTCCGCCACGTCTCAAAGAC
ATCCAAACGACGTCCACCCCATTAAATGTAAGTATCATGTTTTTTTTCTC
ATTTCTAACGGAAGAAAACAATATTTATGATGATCAGAGTTTCATTAAAA
ACTCATTATAAAGTAAAGCATTTTTGGCCACAAAAGTATGCTCTGTATAT
CCGGTCTGTTTCAAACAGAAAGGCTTCATAAAAGGATGTTGAGATGTACG
GAGGTTATTAGTTGACAATCGTTCGTCGTCCTGCGAACATCGACTTCACT
TTCTTAGCTTCTAGCTGACCAGCTCTCTTGCTACTTTTACTTATTGTTAT
GGCACCACTTTGCACTATGGGTAAAAAATTGGATGATCACAAACCTTCGG
AAAAAGCGTAAGTCTTTATTAATTCTTTATGAAAGTCAACTTCTCCCTCC
ATCAAGAATTGCAGAGGCTCTTATGTTTAAAATGTGATTGATTTGACTGT
CATCGTGATATCGTGTAGTTTGTTTACCAATCAAATGACATTTTTCTTTG
TTTACTTTCCAGTGACTTTTCATCCATCATCAGTTTCTTGGGGTCAGATA
TTCGAAAAGACAAGAAGCGAAGGCGTGGTGTAAGTAAAACCTTTTTATCC
ATTCACACCTTCAATGTTCATCCTCAAATACTTTTTCAATCCAGTGTTCT
TTGAATAACATTTTCTTTTGTTCCGCCCTTAATTTAATTCAATCTAAATT
ATAATATTTATTTCCTTTTGATATTTAGGACGCAGAAAAGAAGCGACGTG
ACCGAATCAACAAATGTCTCGACCAATTGGAGGAGCTCATTCCATACGTT
CGACAGAAAAAGGTAATATTCTATTAATAGCTCTTACCTTTCACCATATC
ATATGTCTGTTATTTTTCTTCTTCTACTTCAATTAAATGACAGTCAAAAT
TAATACTTCCGATTCGAAATTTTCCCGGAAACCAATTAGCTTTGTTTATG
CACCAATGTGATGACTTCTATTCAATACAGATAATTCATTAAATTTTCTC
CCTTCTTTCATTTTAGCTGTGCTCAAAAGTCGATAAAGCAGAGGTTTTGG
AATTGACCGTTCATTTTGTCAAAGAAACTTTATTCGAAAAAGAACTTTCT
TTCCGTAAAACGCACTTATCTTCAGTAGCAGAATATGAGCGACGGAAATG
GTTGGAACATTCACCTTCGGCTGATTACGAAAGACATTTCTCCGCTCTTC
GAAAGTCGCCCACCGAAAAATGTAACTGTGGATGTTCTGACGGCCCTTCT
GAAAAATTAAGTCCTCGTCACACTTCACCGATAACATCTTCTTTTCCTTC
ATTTCAACCGCCCTTGGTGACCGTTCCTCCACTCGTGACGTCACCACTTC
ATCGCTGAATCGTATTGATAATAAAAGAACTTTTTATAACTTGAAAAACG
AAAACTGTAAAATAAATTGCTTTCTTCGTGTTGATTATGGAGATGGATAT
TTTATAAATTTGCTACCACGGAAAAGCTTGTAAAGCATTCTGGTGTATCA
CCACAGCAAACTGGTTTTGTTGAAGAAAATCGAAAACTTTTAGATGATTT
TAATTTTATGAATATTTCTGTTAAATTATGATATTGTACATAAGAATTTT
TACCTTAGCCTTTAATGATCTTCAAAATTTGAAAGAACAATGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064955-exon-scaffold_427-1575043694:145339..145715 | TCONS_00064955-exon-scaffold_427-1575043694:145339..145715 | Clytia hemisphaerica | exon |
| TCONS_00064955-exon-scaffold_427-1575043694:144787..144853 | TCONS_00064955-exon-scaffold_427-1575043694:144787..144853 | Clytia hemisphaerica | exon |
| TCONS_00064955-exon-scaffold_427-1575043694:144554..144637 | TCONS_00064955-exon-scaffold_427-1575043694:144554..144637 | Clytia hemisphaerica | exon |
| TCONS_00064955-exon-scaffold_427-1575043694:143721..144349 | TCONS_00064955-exon-scaffold_427-1575043694:143721..144349 | Clytia hemisphaerica | exon |
| TCONS_00064955-exon-scaffold_427-1510915933:145339..145715 | TCONS_00064955-exon-scaffold_427-1510915933:145339..145715 | Clytia hemisphaerica | exon |
| TCONS_00064955-exon-scaffold_427-1510915933:144787..144853 | TCONS_00064955-exon-scaffold_427-1510915933:144787..144853 | Clytia hemisphaerica | exon |
| TCONS_00064955-exon-scaffold_427-1510915933:144554..144637 | TCONS_00064955-exon-scaffold_427-1510915933:144554..144637 | Clytia hemisphaerica | exon |
| TCONS_00064955-exon-scaffold_427-1510915933:143721..144349 | TCONS_00064955-exon-scaffold_427-1510915933:143721..144349 | Clytia hemisphaerica | exon |
| TCONS_00064955-exon-scaffold_427-1491911889:145339..145715 | TCONS_00064955-exon-scaffold_427-1491911889:145339..145715 | Clytia hemisphaerica | exon |
| TCONS_00064955-exon-scaffold_427-1491911889:144787..144853 | TCONS_00064955-exon-scaffold_427-1491911889:144787..144853 | Clytia hemisphaerica | exon |
| TCONS_00064955-exon-scaffold_427-1491911889:144554..144637 | TCONS_00064955-exon-scaffold_427-1491911889:144554..144637 | Clytia hemisphaerica | exon |
| TCONS_00064955-exon-scaffold_427-1491911889:143721..144349 | TCONS_00064955-exon-scaffold_427-1491911889:143721..144349 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_427 | supercontig | scaffold_427:143721..145715 - |
Blast
The following BLAST results are available for this feature:
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