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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064965 ID=TCONS_00064965|Name=TCONS_00064965|organism=Clytia hemisphaerica|type=transcript|length=1681bpRun BLAST on NCBI protein sequence of TCONS_00064965-protein >TCONS_00064965-protein ID=TCONS_00064965-protein|Name=TCONS_00064965-protein|organism=Clytia hemisphaerica|type=polypeptide|length=560bp QIHPENTNDSPFAIEKTLLQSALKAYPKVHDALYSYSNDLENKDVTMYRLRun BLAST on NCBI transcript from alignment at scaffold_427:303731..317766- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064965 ID=TCONS_00064965|Name=TCONS_00064965|organism=Clytia hemisphaerica|type=transcript|length=14036bp|location=Sequence derived from alignment at scaffold_427:303731..317766- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_427:303731..317766- >TCONS_00064965 ID=TCONS_00064965|Name=TCONS_00064965|organism=Clytia hemisphaerica|type=CDS|length=21840bp|location=Sequence derived from alignment at scaffold_427:303731..317766- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00064965 vs. Swiss-Prot (Human)
Match: SPTCS (Spatacsin OS=Homo sapiens GN=SPG11 PE=1 SV=3) HSP 1 Score: 127.872 bits (320), Expect = 1.275e-30 Identity = 85/292 (29.11%), Postives = 150/292 (51.37%), Query Frame = 2
Query: 41 IEKTLLQSALKAYPKVHDALYSYSN--DLENKDVTMYRLLQDNTQLEIRHWFGWQSNNSLAIEDENTLSELPHFSNPFLSERYAVDVKLSYDYYLQQARPMHAFLVYMKNRTHTSES----IDAVTSSVCRLAIENYDSAIISTSCILFMELIEGPYQLLKVDVKAAVLISKYW----NKRVSFEKKTNAQDVKTLLIDLLLAKKSRENLITLVSHLEDCIEVAIHENKEIDRFSFEAICHWKIAIQFCRLHQLPLTTCFVKSCCQTDNWLPLFLFIQLYQIPPTQILEVME 886
++ LL+ AL YPK+ AL+ + D+T+Y L+Q + + FGWQS N+LAI D S LPHFS+P L +YA+ +L++ YYL RP AF ++ S++ I V + + + ++ I +C+ F+EL+ L+VD+K A +I Y + + SF +++ A+ + L A + L+ LE+ +I + +EI R S E+ W + +QFCRLH + L+ +++ C + ++WL + QL+ P ++ +++
Sbjct: 1111 VDPQLLKMALTPYPKLKTALFPQCTPPSVLPSDITIYHLIQSLSPFDPSRLFGWQSANTLAIGD--AWSHLPHFSSPDLVNKYAIVERLNFAYYLHNGRPSFAFGTFLVQELIKSKTPKQLIQQVGNEAYVIGLSSFHIPSIGAACVCFLELLGLDSLKLRVDMKVANIILSYKCRNEDAQYSFIRESVAEKLSKL------ADGEKTTTEELLVLLEEGTWNSIQQ-QEIKRLSSESSSQWALVVQFCRLHNMKLSISYLRECAKANDWLQFIIHSQLHNYHPAEVKSLIQ 1393 The following BLAST results are available for this feature:
BLAST of TCONS_00064965 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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