TCONS_00065003 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065003
Unique NameTCONS_00065003
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length575

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065003 ID=TCONS_00065003|Name=TCONS_00065003|organism=Clytia hemisphaerica|type=transcript|length=575bp
cgaaagagaagGATTTTACATTCAACCGACTGTTTTTGCTGACGTCACTG
ATGAAATGACCATTGCTAAACAAGAGATTTTTGGACCCGTTCAATCCATC
TTGAAATTCAAAGACATCGACGAAGTGATTGCAAGAGCAAATGCCACCGC
ATACGGATTAGGATCTGGAGTTTTGACCAAAGACATTGATAAAGCAATGA
AAGTTGTGAATGGGATTGAAGCGGGAACTGTCTGGGTGAATTGTTACAAC
TACACACATCCTCAATGTCCGTTCGGTGGTTTCAAACAATCTGGTCATGG
AAGAGAACTGGGAAAATACGCGCTGAAGGAATACACCGAAGTTAAACAGG
TGACGATGAAACTTTACAACCAATGATCAGGCGTTGGCGAGTCTTCTTAT
GGACAGTTTCTTTGAGTGAAGGAGTGATCGTGACGAGATGGCGAATGATC
GAATTATCTCACAAGGGGATGGCGCTGGATGGATTCTTTTGCCCTCAcct
ttcaaaaatgattttgtagactttttataagaatagtttttgtacaaaaa
gaaaagtcaaatttaaaatgaaatg
Run BLAST on NCBI

transcript from alignment at scaffold_428:194100..214004+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065003 ID=TCONS_00065003|Name=TCONS_00065003|organism=Clytia hemisphaerica|type=transcript|length=19905bp|location=Sequence derived from alignment at scaffold_428:194100..214004+ (Clytia hemisphaerica)
cgaaagagaagGATTTTACATTCAACCGACTGTTTTTGCTGACGTCACTG
ATGAAATGACCATTGCTAAACAAGAGGTAAGGGGAATGGAACGAGTTATA
GAGAGGTTTGGGAACGACAACGAATCGAATTGCCATGAGNAAATGGGACG
AGTTAAAGAGAGTTGGGAACGACGGTTATTTCGTTCAACCGACTGTTTTT
GCTGATGTCACTGACGAAATGACAATTGCTAAACAAGAGGTAAGGGAAAT
GGGACGAGTTAAAGAGAGTTGGGAACGAGGGTTATTTCGTTTAACCAAca
gtttttgctgacgtcattgACAAAATGTTAAGAGAGTTGGTAACGACAAC
GAACCGAATTGCCATGAGGGGCAGCAGGtgttatttaaaaaggttttggt
TTGATTAATTTAATtcataatatcaaaagataattaccgtgtcataaaaa
tctgctctgcCCATTTTGGACCCCTCTTGTGTACGTCAATGTTAACTAGT
GCGCTTTGCTCGTTTTTCTGAATAAAGTGTACACTGTTTTCTACCTCTTA
GATTTTCGGACCAGTTCAATCTATCTTGAAATTCAAAGATACTGACGAAG
TGATCAAACGAGCAAATGCGACAACATATGGCCTCGGCTCTGGAGTTTTA
ACTAATGACCTTAAGACAGCGATCAAAGTTGTAAACAGACTACAAGCTGG
TTCAGTTTGGTAAGATGGTATTCTGAGGCCACAAATTCCAATGACATTAT
GTTTAATAATTCCCACTTCctaaattttgaataattcttCTATACATCGA
TAATTTTCGTTTTCACTTCCTCGCTTCAAATTTCTTGCGAATTTAATCAT
GTAAGGAATGCCTTGACGTAGAATTTCTGCTCAGTGAGGATAATTTTCAA
AACCAAATATtctatattttgttttgttttgatgatttccaGGGTGAATT
GTTACAATATGATTTTCCCAACTACACCATTTGGAGGCTACAAACAATCT
GGTATTGGCAGAGAATTGTAAGTCTTCATTTCTTTCTACGAGGGGATGTC
TAAAAAGAATTGTCATTTATGAAACCCAGCCTTGGTCTCCCACTTAAGAT
TTTGGTTTTGGTGTCCCTTTAGGACGGAATTTTATTCGAGGAATTTACAT
CAAATGATTTTCTCACATCCCACTTTTCAAATAGACTCCAATTGTCATTT
CATTAATtcattaattctttttttttcaggggAGAATATGCAATCAAGGA
ATACACCACAGTAAAATCGGTGAGATTTTAGGCTTTTTATAGGGAGTTCA
TTGGAGGATCTGAAGGCAACACAAAGCTTCTATATATTGTAGCGAATTCA
TGTACTTGTACGTTTGAGTTCAGCGGAGTGACTGAAGCACTTTGAAGTAC
ATAGCCGGAGTCTTAacctgcaaaatcgaggactGTTTAAGTCCTCAGTC
GGTCATGAGGGCCTAAGCAAATCGGAAGGTAGCCGTCTCTGTTGCACAGA
AAAACACGAGTACAAAGCACTTGTATGTGAAAATGATATAGTCTGGCCTA
GATACCAGTGTTTTTTAGTTTGATGCAGTGCAAAGTCTTGAAGAATGCAA
TTCTGATTAATTGATCAGAATTTTCATCTCAATGGTTATCTGGATAAGTC
ACAAATACAATATTGGTGTGTGCTTTAAAATGGATGTTTGCTTTATAAGT
CGCATGGGTCATTTACGCTTTTTCTTTCTGTACCTAGATTTGCTCTTGCT
TTTATAGGTCGTGATGAATATAGcatgaaaagttttttgggGCTATGTAC
TGTTGATCTAACAATGGTATCTCCAGAAATCGTCATCTAAAACTGAGACT
TTGTTGCAAATATTGTTCGACGTGCATATGTTGTTTTTGCTTCGCTTTGT
TTTTTAAACAATTACTGATCTTCAAAATGATTGTATTGGATATAATTTTA
TCTTTGAATTTTTGTATTATAATGTAATtatatggaaaataaaaatctta
cGTAGTTTATATTGAGTGATTTGTAATTTCTGAAGTCATGTCGGTCGGGT
TTTTGATTTGCTGCAGTTATCAACATTCCCGCTATGGCCTTCAGTTGGTA
ATCTTTTCTCAAGACTTTGTATCATTTCTTTATCACCCAACATAGTATCT
GATGGATGACCTCTATTTCTTGCCATATTGCCATCATACTTCTTGAGAGT
ATtataaacaattttcaaaagtgtTTAAATTAAACGTGTCTGAGACGCGC
ctcttatgctgacaaagcagaatcaACAAGAGAACTTTTTGTGATCGCGT
GCCATGGAAGGGTGGAACAATTACTCTTTCTTTTTTGCTGTATAAGCAAA
CggtaaaatatttaaaaaaacgaTGCTCTTTAAAAAGAACTTGACCAATG
AATGCACAACCTATAAGTtccttttttaagatttttctcgATGCAGACAG
CTTTGTATTCGTAAATAACAGAAAACTACTGATATAAGCGAAATTTTCCT
CCTTTAGTTTCTATATGGCGACAAGACCCTAGACTAGCCATAtctaaatt
taacatttttgacCATATGATAAGTCAATATTTGGTTATAACATATCAGG
AGTTGCATTATAATAACAGCTTACACTTGTAAAAAATCCTTTAAAGTATT
ATGAATAAACATAGAATTGATGACTTGGACAAcaaaacagatagttttaa
cATTAAAAACCATGTTTGAATTGTGTCATCGATTAGGCTAGACAAACGCC
AGTCTCGACCGAAGCCTTGGCTCCATGTAATTTCCGTCATTCAATAATGA
GAACGATATATGAGAATATTAATAGGATGAAAATATTATTGCAAGTCCAC
ACCTGTCTGTGGCTCCTCTCAAAGCATGGTATAAAAGGTCTGACAATCTT
TACTGCAAAATCATTCATTCGCAAAGTTCTATTACTCAAGCTAGAGATTT
CAAGGAGAAATCAATTGCAAAGTATTAGAAGATTTACTACCAGAAACAAC
AAGAAATTGGGTAGGTTATAGTTGttccttctttttcttcgtATACTACG
GTCTTATCTATCTGACTACTGCTGAGAATTATGTTTAGTTTAGATAAAGT
ACACCAAGGGCTCGATAGTtcattacaatataatttttggTGATAAAATT
TTCTACAGACACATGAGACCTTTTTATTTCTTCGTTTTCCAGGAAAAGCA
ATTCAACAATCACaacaaaatgattttattttattttttcactgcGATTA
CCTTGATTTGGTCCACACAATCTAAAGTCATTCTGCAAGCANTTTTttat
ttcctcgttttccaggaaaagaaattcaacaatcacaataaaatgatttt
attttattttttcactgcGATTACCTTGATTTGGTCCACACAATCTAAAG
TCATTCTGCAAGCAAAGGATTCAGAATTTCCAATTATTCCAACCCAGAAG
AAGGCTTATTCGCTTTCATTTGATCTCATCATTTACGGAGACTACGTTGT
CAAGGGTTCTGAACAAAATCGAACCGTCTTATATTTGTCATCTACCGTAA
ACAATGAGATAAGGTGTCCTGAAGTATCGCTTTTAGCTGACAACAAACTT
CAAGTTTGCTCTTCACCTGTCAACACAAAAAGCTTCTGTTACCATGGAAA
TACTCCCTTACCGTACgggaaaacaatcaaaatcaaaattgagcAGGTCG
TGAAACTAAGTAAGACAGTATACTAAACTTTTTACGCGTAAGAAAGCAAA
CAGATCCATGAATTCATAAAAAAGTGCCGTATTGGATGgaagattttaaa
agttctcagaagtgCATATcttatcttatttttttttaaagagtgaCATT
TAAATAAAGCTGTAGGGAAATCTTCCTCATaaaacacgaggctgaaaatt
gaccaaaaatgaatTGGAAAGTCCTATCTTATTTCTCTTAAAGAGTGACA
TTTAAATCAAGCTGTAGGGAAATCTTCATCATaaaacacgaggctgaaaa
ttgaccaaaaatgaatTGGAAAGTCCTATCTTATTTCTCTTAAAGAGTGA
CATTTAAATCAAGCTGTAGGGAAATCTTCATCATaaaacacgaggctgaa
aattgaccaaaaatgaatTGGGAAGTCCTATCTTATTTCTCTTAAAGAGT
GTACATTTAAATCAAGCTGTAGGGAAATCTTCCTCATAaaatacgaggct
gaaaattgaccaaaaatgaatTGGAAAGTCCTATCTTATTTCTCTTAAAG
AGTGACATTTAAATCAAGCTGTAGGGAAATCTTCCTCATAaaatacgagg
ctgaaaattgaccaaaaatgaatTGGAAAGTCCTATCTTATTTCTCTTAA
AGAGTGACATTTAAATCAAGCTGTAGGGAAATCTTCCTCATaaaacacga
ggctgaaaattaaCCAAAAACTAATAGAAATTTAagaagaatttcaagtt
ttcagaAATGTCTTTAAAAGTAGTGACTTAAACAGATTTTAAATcctttt
tatgtttttcagtaaagaaactaagcgtattaaAAACATCGTAAGAGCAT
TTTAGCcttaaaatttcaagaaattaagTATACAGCCCAACCTGAACCAT
AATTTACTGCTAATTACATAATTTACATAACTTTTAAAAAACTGTATTAT
TTTACCGTTCTCTCTTCATATTTCAGACGACGAATTTAACTTTATCATCA
ATATCGACAACCACATTGTCTATGACCAAGAAGTACAAACTGTCTCCGAA
TTTTTTTGGAACGAACAAGGCCAATTTTGGCTCCATGAAGGTATTAGACG
TTTCCATAATGTCCAGATCTTCAAAGGACGCCAAAGGAAGATGGATTCGT
TCTGGAATCAAAGCCCTGGTTTGTTCGCCAGTAATGTCCATTTTGAGAAT
CTACCAGAACGTAAGAATAACACaacatttcttttaaaaactgaTATCAA
AGGCTCTAGATAGTTTTACAACCATATAATCTCATTCATTTTCCGAGCCT
GACCAAGAGACgtgcatttttttcaaagtaacaTGGTATGAATATGTAAA
GATCATCCATATTTTATCAGAAATTTGCCTGTCTGTAgactgctggcatc
cactaacagaTTAGTGCTCCTTATAGATATATCATACTTCCTGCAGCAGA
AAATCTTATTATATTTGACGACTCGTGACTCAATATCAGCCAAACCCCGC
AAAACTTTTTTATCCAATTAATAGTTCATATATCTGGAACGTATTCTCTA
TAAAAATCCCCTTGAATGGACATATACTGGACATGAATTCAAACTTTTCT
TTATAGATTTCAAAGTTCAGAAAGAATacttctttcaaaccattccaACT
CAACGACCTTACAAACTATTCTTCGCTATCATGTTACTAAAATCAGACGA
CTCTCTTATTACTGTAAAAGATACCAATGTTTTCAGCTTGGTTGCATCTC
AAATCAATACCAACGGGAGTAAGAGGTCCATCATAACGGATCAAGTAACC
TTGGTGGCCGGTCAACCGAAACTACGGATCTGCACCGCTGGATCTTCAGA
TGGGCGTGAACAAATTTGCTTCACAACTGGGCCACTCCCTCAtggaaaat
ttatcaatttcagAGTCAAGAAAGATTACACCTCCTCTGGCTCAAAAGAT
ACAGCGACGTATTCGTACACTCTTAGAATGTCAGAAGATGTTCTAAACCC
TGGCGAACCCATTTTCAGCACCATGGTAAGGCACCAGTATGACGACGTTG
ATGTGATCTTCGGCCACAGATTGGAGCCAGCAAACGTGTACGTCCGAAAT
TTTTATCCAATCATTATGCAGGATAATGGCAACTGGTTTGTGCTCTAAAG
TTTTTCAGAAGGATTTTTTGActtaatttttgtaattaaattttgTATTT
CTCACACAGGGGCCCTTTTAATTgttgattttgtactttttcttATCGAT
TTTGGAGAATAATTTTGCACAAAACATTTTAAGAGTGTAGTTTTTGCCAA
GCGCTTTTCTAGCTACAATCATACTCTGGAATACCTCGGATAAACATTCA
TTTGAATTTCTCCATTCAAATTTCGGAGAAATTCATTTTCAGGATTCCTC
AATAACAAAAGAGCTACCAACGTACCAAATTCTCAGAAATCTCCAAAATC
TCCAAAATCTCTCCCTTGGAGGCAACCATGGCAGCTCTTCTCTTctacaa
gtttttttaaaagaacaaactataaataTGGCATCGATGACCAAAACAAA
AGCTAAAAGCTTCATGGACCAACTACTAAAACACAACAATCAAAGTTGTA
TTCAAAGACAGTCATAACAAATACAGATTCAAGAAGTTGACTGAATTGAA
ACAACACGAGAAGTACGCGAAATTAAGTATCACCGACGACTTGACAAAAA
TGGAGAGGGAACAAATCAAAGAGTGGAAAAAGAGAGTAGACGACATGAAT
AAAGCCAAGTCAAATGACGATTTcaaatggagggtacgaggAAGCCCTCg
tgaaaaaattatattttaaaaagattttttgtacaagaacggtttagagg
cccttgtGCCTGAGCTGTAATTCTGGTAATTCTCTATAATaatgtttcat
agaggtcaatagacctgcgaaatatattgttatcaaataaaataaaataa
aacagtCCAATAAACACTATCACTTAGGAAATTGTACAAAGTACTCAcag
aatgatgaaaataagaacaactgaAAACCGAAAACGTCTGAAGGCcttta
aaatcttttgaatGTTCTCATGAAAAATGTTTATGTCTTCATGAAGTCtg
atcaacattttcattttaacaaacaattctttttcaaacaCCTTTTAACC
CACTTCACTGAAATAGTTTTGCAATTGACAATTTGATAAACACCcacctc
aaataaacgcccctcctaaacaccaaaaattttaatcaacgcccggggcg
tttattcgaagtaatacggtatttcattttgaaaaatgatattgGTCTTC
ATATATgtgaaaacaaaatatattCAACATCAACGCGATATCTAATCTCT
AAGCCAAACTACTCTAAAGAAGGTAGAAGAGCtcaactacatgttttttt
ttataagcattgcacttataagcatatctaggctcagatatggtggaaaa
ttaagcatatggcaagcattattTGGGcctatgaaaaatattttttccct
gattttggctttttttggctggaattttacggattttcagtatttcccta
aatttatgctttagatttaagcatccccttaAGCATTTNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNacctaagcatctctgagcctgttttcggattttt
gtatgcttataaaaaaaaacatgtatcttgACAACATTACCTCTTTGTTG
AAAGCGATGTAGAAAGCTTGACAACTAGTCATAATTTAGAATTCAAacaa
aaaatgagattttttcccTGCCAAAGTCGGATCAGTGTTGATCTATGGTT
CACCACTCTGGTCACTCACCAAAAGCCTTCTAAAACGATAAGATTGCAAA
GAAATTCTAGAAAAAATGCAACCAGGTGTTTTTCAAATTCTACGTTACAA
GAATCTATCGAGATTTAACTAAATATCGAGCGGGAGCGGAATTATAAAGC
AGTCCTAGCTGCTAACTAGTAGAAATGATGAAATCATGTGTAGAGTAGAC
CAAACCATCTTGGACGAAAGTTTCTTGTTGGGCACAGAAAAAGTTCGCTG
ATAATACGAcctttaatttcattttcaatatgaCGGGATGGTTACGGAAT
TTTCCAAAACAGGATCAGCTTTCAGGACAGTTTTCCCAAGGGgccatagc
gtcagccccctgacatttggggggggggagggttATACCCAAAAAATGCA
AATGAAAACTGGGAGCTAAAATACAGCCAAATATTTGGGGgacctgatat
gtttgggggCCTGGAATTTCAATGGCAAAACTGGGGGCGGAGGTTTTTCA
AAGGGGCGCCGAAAAACAAAGGGTTACTAGATATGGcagtttttggccaa
aaaagagagaaattgCCTACCCAGTTCGCCTGAATTTTACCCCCCACGCT
ACTGCGTTTATAGTCATTTTCAACCACGAAATAAAGGCCTTTTTACATCT
AAAAAACCGTTAAGAtttcgaaaatggcaaaaaaaagaaaatgtgatTTT
CCTAAAAACGATATTAgatcaacaaatattttatactAGGTATAGAACTG
GGGActgcttaaaaaacttttaatatttGGGGGAGGGCCTAAATCTTTGG
GGGATGATTCTTTCTGCGGATATTTCCACTAACGTACTCTTCATAATAGC
GTCTCTTCTCAATTTTCTTTGCTCTGATTTACGAACACTAAAATGCTATT
GACCAACTTTCTTGTATATGTATtgacaatataaacaaaaaacatctgaa
aaatGATACTACCTAGATTACTGAAGTATGGGAAATAGACACATATTACA
AGGTTTATTGAGAAAAGCTTTTTTAACGAATTATTCTATGGTTAAAGTTA
GGATTCAACATACTAAGACACTAACTGACGCTACTAACGTTAAAGTTTTT
GCATTTATTTTGAAGGTTTAagcaaaataagagaaaaagaaaatatacta
TTGCAACCTTTTACTTGGAATCAAGCATGGGAAACCCGAATCCAGAAATA
CAATATACCAAGGTTTGTATTCATTTTCTGGTTTGCACTGATAGTGTGAA
TTCTAAACTAAGATTTTTTGACTGGTTTTGCtagttttcttgaaaaaatt
tgttcgatgttcatgatttttcaaaatcacaaGCTTCCATTGGAAGTGTT
ACACAGAATTAAAACGCTCTGAAGCGCACTCGTATGTGAGCGTAGTGAAA
AACTACACTGTTGCGGAGTATTACTGCGATGCGGAACNAGTGTGTGAGCG
TAGCGAAAAACTACACTGTTGCGGAATATTACTGCGATGCGGAACTCGGA
AGTTTAGAAGTTTACCGAACTGAACTACGGTCTCGGAGACTTTGGACACG
CATACGAGTCTATTAGTAGGGTGATACCCCTTTTGCCAGTGTAGGCATTA
CCCTATATATCTATCACCTTTTTCGGTCTAGGCAGCAAGCTCCTAATAAG
AATTTGACCGTTTTGAACGATACCTTCCTCAGAAATACCCTTAAATTGTT
TTAACTGTCTTTCCTCCATCCAGCTTTTCATCAACAACGAGTGGTGTGAT
TCGATCAGTGGCAAAACATTCCCAACAATCAACCCTGCAACTGGAAAAGT
CATCTGTCATGTACAAGAGGGAGATAAGGTGAACttctaaattttactgg
ctaTCCCAGAACGTGACTAAGATTGAAAGGGATTCCTCTGATGTTGACTT
GTAGccttacacattttttataagaacaaactatataagaacataatgct
cTGCTGGCccaaatgttaagaacaagttaagaacattttaaggctttgcg
gactctaaaacacctgatttcttaggaaaatagacaaaaatgcttataaa
atggtgaaaataagaacaaacctgtcaagaatatttttaggctgaaaatt
caaaaatccggcttcaaaaatttcgaatgttcttataaaaaaaacgcgtA
CGGAGTCCTGTCTTTAAATATCCCTCCTACCATGGTTCACCATCATTCAG
AAAGGAATGGTTGACAGAGCTGGCTTTTCTCTGCCTCATTTAGAGGGTGT
Taactttttgtgaaaatgtttttgtgaaaaagtattttgtttacattatt
tTACTTTGAGAAAAGTGTGGACCTTCATAGCAAAATGAAAGACAAAGGTA
CTTTCAATACATGGATTTTTTCCTGGAATATATTTCCGTGTATATCTGAT
ACACCAGTACAAGTCACTTGAGCTGCAAACGGCTAAATTTAATGATCGTG
TACAAGATATCAGTTTGAACCACAAGTGACTTTGTACTTTAGAGATGCTG
GCTAAATCGATCTGGCTAAATTGATCTGGCCAGCTAGGGTGCAgtacgaa
atgcatatgctgttctaccacccaaatctcctgagtgaatatagttggac
agaaattcttatttcttcacaatTCTCACCCTCCTTCTTACAGGCTGACA
TTGACAAAGCAGTAGAAGCTGCTCGCAAAGCTTTTGCAATCAAGTCACCA
TGGAGGAGTATGCATGTTGCCCAAAGAGGAGTACTTCTTAATAAATTAGC
TGATCTTCTCCAAAGAGATCTGAAANAAGAGGAGTACTTCTTAATAAATT
AGCTGATCTCCTCCAAAGAGATCTGAAACGAATTGCTGTAAGTTTGATCA
TAAAGTTTCTAAAGAGAGGATATCGTAGCTGAAAGTTTGATGAGATATGT
GGGCTTCCTTCGTCTTATTCCGTCGTTTTTTTCAGAGATAGTGAAGTTAA
GCATCCATTAGTGTGAAGACAGACTTCTCAAAATCTGATATTTACTCTAC
ACCTCTTGCTTTAAACCCTTTTCCCAGAGTATTGAATCTGATAATATTGC
TAACCTTTTGCTTTAACCCTCTCTTTTTGCAGAGTATTGACACGATAGAC
AACGGCAAACCGTACCGTGATGCGGAAGGTGACGTGGAACATTCTATCGA
CGTCTTGCGTTATTTCGCCGGATGGTCGGATAAAGTGTTCGGAAAGACTA
TCCCCATAGCTGGTGAGTTAAACCTCCAAATGTTTGATAGCTAACTTAAT
TGGGGGTAAGATTTAAATGAtttcgtgatattcatgacgtaatgttttat
acgaaagcacccaaaaaagactGGGTGCTTGACACTAATTTTGAATCCAA
ACAAAACTAGTTGCAAACACCCAGGCTTTTTGGATGCTTCTGTAAAAAga
tattacgtcatgaatattatgAATTCGCTCCTCCGTTACGTTTTCCAAAA
GtggaaaaatcattttcaagccTGACTTTGGTCAGGAATGTCGACGACTA
TTTACATTGTAGAAAATAGCCAACAAATAATGCAAGGGGCAAATTGTAGT
TTAGACAAACTggtattatcccgtaacaattgTCGTATTATCATTTTACA
CCCATATTACTATATTACACGGaatataaacgactccagtctagacTAAC
CCTTTTTGTGTTTTCAGAAAACGAATGGTTTTGCTTCACAAAACATCAAC
CTGTTGGTGTTGTCGGTCAAATCATCCCTGTAAGAAATATTGTTTTCCTT
CTCCAATAGAGTCTTTGAGTGTTTGGAAATACTCTTAATACCCAATAGCT
AAAAGAATTTGTGTCAGCTGAAAACATTGTCAAAGATCAATAAACCGAAT
AAGGTACAGGGGGTTGgggataaaattgaaaaattagctAAGGGAGGGGA
CGTCTATTAGGTGTCCGAGTATGGTCTTTATGACTTTTATTACCTTAAAT
GTGACAATACAGTTTAAAAATCGCCTTTCGTTCTACTGTCTAGCTGATAG
CCCAGAGTTTACGATGACATgtgcttttgttttgaattgaatcttTCCAT
CTCATATCACTTTTCTCTTTCAGTGGAATTATCCAGTTTCCATGATGATA
TGGAAACTAGCTCCTGCACTAGCCTGCGGATGTACTGTTGTTTTGAAGCC
TGCTGAACAAACACCTTTATCTGCTCTTCATGTTGCATCGTTGATCAAAG
AGGTAGGTTAAGCTTAACAACAGCCTGGACATCccagctttattttcttt
attttcttacttTGATGTTTCTGCTATTTAAAGCTTGGTCTGCCTAGATT
CTTGTACACCCGAGGTCGGTAAATTATTAGTTATGCGAAATATTTGAATT
GAGAAAGCACACGTGTGCTGCTTTCTGCCTGCGGTAaaccaaaaacatca
aaattaaaaaaaaaagtttacaccTTAACAGACGTAGATTTGAACTTGAA
AGGCAACCTAGCATATTAATTTTTGAatgtgatatttttatttcaacaaT
GCTTGTTGAATTCTTTGAGTGCTAATTTCATGCCTTAAAATTGGTCCAAA
TGATTAAGCAATACTCATCTACACCCCAGTACTTGAAGGTAATAGATGCA
GTTCAGGAAACTTTGGCCGTAAAAATTGGGGAAAGGTCGTCTATCAAATC
GTGAAAGAATCTCCggtaataaaaaatgttttttgtcaTCAAAACAGGCT
GGTTTCCCTGCTGGAGTTGTGAACATTGTGAATGGTTACGGGCCGACAGC
TGGAGCTGCTATTTCTGAACACATGGATATCAACAAAGTTGCCTTCACCG
GATCTGTTGAGGTAGAATTTGCATTGAACGAAAATCGACTTCTAAAGAGA
GTTTTCTATTTATTCATTATCGCTTTAGTtcactgtttttttttcctttt
tgtccaTGAAGCTTATAACCTGATTGAAATTCATACTTCATTTTGTTATC
TTTTGGGATTTTAGCAGCACGTCTATCTGGTTCATATTGATTTAGGGATT
TTTTGCGAACGCATTGCGGGTCCGTCCTGAATTCATCTTTCAAATTAACT
ATCaatcatatatatttttctttttaacagaTTGGAAAAATCGTTATGCA
GGCTGCAGCCAAATCCAATTTGAAACGAGTCTTCTTGGAGCTTGGTGGCA
AAAGTCCTTTGATTGTTTTTCCTGATGTTGATGGTGAGAATTAAGCCCTG
ACTACTATTCTATTTGTTAGAGAAAAAGGAGACAGAATTcagcagttaaa
atctttgtttggaAAATATGACGTCAAAAGACGTCAAAAGAGTTCAATGG
ATTGACTTTAGACAACCATCTGTCTGGTCCACTTATTCGAAAAGTTAACT
ATTTTGCCTATTCTCATCATAAAAGGTCAAACCAACGTTTTCGTATTTTA
CAGCTTTTTAATTAACTGTGTGGAAGCAATGATCGAGGTTTTTAGTACGA
GTTATTTTTGTTGTAGGTATGGTTTTGTCCGTATTAACCAAAGCCGGCTG
CAATATaccttttggaaattttctttatCATGTTTTCTTCTTCTAGactc
tttttcaaaacattgggCTGTTCCGTAAAagttccatacaggggggtgga
cgaaccatTTCATgccaaaacaaatttcttggaaatgtgtggatacccct
aGAAAGTAGTAAAGTTTGCAAAAAGATccttgtaaaaaattattttcatg
ccATAAAGGTGGATGAACAGAATATCAGTGGTTCTCCCCCTGGAAattta
agaataactttttaccccctggaaaaatgaaaaaaaaacacttctttaga
ccacatggaaattcttctcgtattaccccctggaaatgctCTTCCATCCC
CCTGTATGGTTATAacctggaatggcccattttcatattgtgaatttaat
ttttcttttagtggACTGGGCAGTATTGCAAGCCCATGAAGCCATTATGG
AAAATCACGGCCAGAACTGTTGTGCCGGCTCACGTACATTTGTTCATGAA
GATATTTACGATCAGTTTGTGGAGAAAGCAACCGCGTGTGCGGCCGCGCG
TGTTGTTGGTGATCCTTTCAATGATATCACACAACAAGGACCTTTGGTAA
GAACTTTCAAATGTCAAATCGATCAAAACTAAACTTTTTGAATTGAAGGT
CAACAACATTTATTGGCGCCGAGCATCCATCCTCCTTCCTCTTTGTTGGT
TTGTGGGAGACTGTTAAGGGTTTCTACCTTGGACTCGGTGAAGCCCTGGT
CACCATCCATTCTTTGCTACTTGAAGACATATAACAAATCTTAAGTTTCT
TTACCTCGAACGTCTacaactcaaatgtctccttaactcaaacaattTTA
CTGTCACTAAATGTTataggaaagaaattttggaatAATTTAAGTGTATG
ATTATCTCAACCCAACAGTTTTtctgtaactttttttctataattctTTC
AGATCAATGATACGCAACACGAAAAAGTCCTTGGTTTGATTCAAACTGGT
ATCAAGGAAGGTGCCTCCTTGAAATATGGTGGAGAGAGAGTTGGGAACGA
GGGTTATTTTGTTCAACCGACTGTTTTTGCTGACGTCACTGATGAAATGA
CCATTGCTAAACAAGAGGTAAGGGGAATAGGACGAGttatggacatgttt
tttaattgtttcgtttttagcattttcaaaaaagctaaattttgattggg
aTAACTTGGAGGTCcgaaattttcacaggatgttaGTAGTGATGATAGGA
CCCCAAAAAGTTCTTTTCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNACTAAAATTAACTTTACACCTAGtctaatttttgctaaattcag
cTCATTTTGAGACCTAGGAACATAAAATAACCTCATGAAGTTCTTTCAAT
TGTGTATAAAACAGTAATGATAACTTATTTGATGTTCAAAACCTTTTCAG
GGTCCAGAATCGAgcaaatatttaacattttccgtaaaatgctaaaatac
tgcTCGTTTTTGGTCCATTTAACTATGACAAAGATCACAAAAAAGACTTT
TAAAGCTCCATGAATGATCCAAGCATCAAATAGCGCCTAAATGAGCTATG
AAATAACAATAACCTTCGGGTAATCAAATTTTAGCATAAAAACATGGCCT
TCAAGAACTCTAAGTCCACTCTATGCTAAATTTTTGCTCATAAAAGGACC
CTAGAATGCTTTATATCGACCAAATTtggtttttctatctttttgaatGC
CTCAAGTATACATAATATCAATATCAtagttcttttgtgtttatcctAAC
TGTGCTagttgattaaaaaaaagccacaCCCAATGCTAAAGACATGCTCA
TAATGGGACCATACAACCATTTTTAATGATTGCTTATGTTGGTATATTGA
TCTTATAAGGTATAAAAAGGTATGTGCAAAGCATTAGAGTCATAGCAGAA
AAATTGAGAGAGATACAAGCCTCTAAATCCAAATGCTAAGTATTTGCTCC
CACTAAAATGCTAAGTATTGGCTCATATTTGGACCGCACTTTGTTGAAGC
ATAAGTCATGAAATATTTAAGCTTTAGAAAAAATTCCTTTAAATTTTTAA
AGTTCATCTTTTCCACGCAACCATCATCAGGGCATAATTTCagttcattc
attatattagaaatgaatgatgatttcccaagacccctgaaaacgaaaca
attaaaaaacatgtccttataGAGAGTTGGGAACGAGGTATTTTTCGTTC
AACCGACTGTTTTTGCTGACGTCACTGATGAGATGACCATTGCTAAACAA
GAGGTAAGGGGAATGGGACAGTTATAAAGAGTTGGGAACGATGTATTTTT
CGTTCAACCGACTGTTTTTGCTGACGTCACTGATGAAATGACCATTGCTA
AACAAGAGGTAAGGAGAATGGGATGAGTTAAAGAGAGTTGGGAACGAGGT
TATTTCGTTTAACCAAcagtttttgctgacgtcacTGACGAAGTGGTCAA
TAAGAGGTAAGGTGGTGTCGGAAAGAAGGTTTTGAGCGAAACTTGTATGA
CAACTCCATACAAGATTCCCTACGGTCTGAGTGATTCCTCTGATGAAAAC
TTGAGTTTTTTTTGTTCTCTCTACCTTCTTAGATTTTTGGACCCGTTCAA
TCCATCTTGAAATTCAAAGACATCGACGAAGTGATTGCAAGAGCAAATGC
CACCGCATACGGATTAGGATCTGGAGTTTTGACCAAAGACATTGATAAAG
CAATGAAAGTTGTGAATGGGATTGAAGCGGGAACTGTCTGGTAGGTTGCT
TAGCTTCTTGGTTGCACACTGACAGTATTTTCCATTTcgtcttttcttct
ttttttttctgaattggTCCGGGCTTGAGCGAAAGGAAGTTTCAATTATG
TTTTCAAAACAACTGAGCTAGCTCAATTGCTTGTCATaaccagtggcgtg
gtggcaggggggggcaggggggccaggccccccagcagagcccttttgag
aaggggcgcccaaaaataagggacgccaagaaggatttttcaggcgccca
tatcgaaagattgacaaatgaaaaaacaaaaatggcNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNataatgagcgtatagagaggggcgccaaaaacaaaaaatct
ttaaaaagggcgccatatttgccttggccaccccagaggaattttcccac
cacgccactggtcATAACACCCTTACTTAGCAGACTGCCTTATCTATGAA
AACTACAGGGATAATCAATCTTGAATTTGTAGGATCATAGACTAGAGTAT
TTTTATCTTGAATTTATAATGTCGCTGGATAAAGTAATAAGTAGTAAAAT
GTTCAcccattttgttcaaaaattctttcaaatccaAAGGCCTCTGATTG
TTTCTcctcttccctttaattttatCACATTCATAAGCTGGACCGTTGTC
TTCCAAGTGATTTTTTGTGTTGTTCTTTTGGTTTTGAATTAGATATCTCA
CTGCTTCCTTGCTTGTTGTACCCCATTTTCAttagacaggagaaccgtcc
tgtatttttttataatctggtgtatacaggacgggtatgacctgtTAGGC
ACAaatctgcctcaaaaaatttataatgggaaattcgaatttagcgctgc
cctcacttactaaaactaaaaccaaatttcggaaattGCACTTTCTCTTA
GAAattgtgaccagtaaaagaataacaaaatttgattggctatgttttca
accgttattaggatctgggaaattcaaactctcagcccatgccatgctat
atatttcgccatcagcatatagaataagaaatcatagcatggatctccag
gctacatTTTCATCTGTTATGATTCCGAGGAACACCGCTAGCCTCGATTT
TAAGTATTACGCCAAAATTAATGAAAAGATTGCTCAAATTCCACCATTTT
TTAATAAACAGGGTGAATTGTTACAACTACACACATCCTCAATGTCCGTT
CGGTGGTTTCAAACAATCTGGTCATGGAAGAGAACTGTAAGTAAACATCC
TACTCGTTCAATTATTACAGTCGAAAGAAATAGCgtaataaaatatattt
caaggCTTTTAGTCATAGCTTCTGACTTTTCAGCCACTCATCCATCGCTC
CTAAAATCACCACTGAAAGTTTGGTTAGGGTTATTTGAAACAATttaaga
tattcaattttgttgttctgtaaggGTTCTTGTTCTTGGGgagattcaaa
atttcaatttatcaTTACCATACACATCTGACATCGGGAtgagtttttat
aaaatattttacttattggtcatttgaagttaTAGAGATGAtactttctt
tagaaaaagtaaaaagattttattaaaggtTAAAGAATTTATTACAGGTT
ATTGACCAACCAAATAAAATAAGAGCTTCTAAAGAATCCAGTATGACATC
GATATTTAAACCAATAAGAACCATCACAACAAATATGACATGTATCAAAA
AATGACGATATTTCTTTTTCCAGGGGAAAATACGCGCTGAAGGAATACAC
CGAAGTTAAACAGGTTCGTTTGATTTTAGTGATGTTGTACCGTGAATTGC
TATGGTCGGCAGGCCACGCACCTTTCTCAAATATTTGGCGAATTTTAATT
TTGTAATAGCTAAGTCACAAATTATTGATCCGTTTTGCTCCTAAACGAAA
ATGAAGCTCTACTATTGTTTAGAAGTGATGTAAGAAAggaatttaaccaa
tagaatgccttaattttgtttcggagcgaaacggaaccgtagcgtGTGAA
CGTGCTCTGACTCATTCGATTTTCCATTGGTCGCCTGattataaatattt
tcagaaGAGCGGATTCTGAACTGGGGAACAACTGACTCGGAGGCAACTCG
GTATATTACCGTTCTTATGGCTAACTATCCAAAAGTTCACTCAACATTTC
CGCTGAAAATGCAAATTACTGAATATTTTTGAGATATGAACCAATCCGAA
CCAAGTTGGTTGCTCATAAAAACTCTTCCAAATTATGTCCCAGCTTGTTT
AAACTTGTTTCTAATTGGCAGTTCAACAGCAGTCAGGTTGTGCTAAGCAA
GCGGTCCGGGCTCGATTCGCGGAGGTGTTATATGTTATCTAACCCTTTAT
ACTATGTACAGCTTGTTGTATAAGGCAGCTCAGCTCTCTATCCAATTTCG
GTTGGTAAATGGGTGCCACTACTTCTGCAATCAGTGGGTCAATCGCGGGG
TTTTCGGCGCTGTGTTGGCTTCGCCAAAAGTGAAATACTGTAAGACTTGC
TACAACAATCCTACCCCCGGGTCATATGATTAGCCAATGTAGCTTCTCAG
TTACGGAAACagctaattcatgatatgcaccactggagagtcttctgaga
acttttgaaatttttcacccaatacgtcacttaaacaatagaaaaagtga
cgtattggatggaaaatttaaaagttctcagaagactctccagtagtgca
tatcatgaattgattgATTGTACCGCAGCACTGTCCGAAATTAATGCTTT
GACGCGtttaaacttttggattgttagcCTTAAGTATAGTAACCAATTCT
TCTTTCTTGTCGCCTCTTGAAAAAACACTCTGAAACAAACAGGAGAAATA
TGTGaaattttgtttattatttCCTTCAGGTGACGATGAAACTTTACAAC
CAATGATCAGGCGTTGGCGAGTCTTCTTATGGACAGTTTCTTTGAGTGAA
GGAGTGATCGTGACGAGATGGCGAATGATCGAATTATCTCACAAGGGGAT
GGCGCTGGATGGATTCTTTTGCCCTCAcctttcaaaaatgattttgtaga
ctttttataagaatagtttttgtacaaaaagaaaagtcaaatttaaaatg
aaatg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040754XLOC_040754Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065003-exon-scaffold_428-1491911889:194100..194175TCONS_00065003-exon-scaffold_428-1491911889:194100..194175Clytia hemisphaericaexon
TCONS_00065003-exon-scaffold_428-1510915933:194100..194175TCONS_00065003-exon-scaffold_428-1510915933:194100..194175Clytia hemisphaericaexon
TCONS_00065003-exon-scaffold_428-1575043694:194100..194175TCONS_00065003-exon-scaffold_428-1575043694:194100..194175Clytia hemisphaericaexon
TCONS_00065003-exon-scaffold_428-1491911889:210332..210489TCONS_00065003-exon-scaffold_428-1491911889:210332..210489Clytia hemisphaericaexon
TCONS_00065003-exon-scaffold_428-1510915933:210332..210489TCONS_00065003-exon-scaffold_428-1510915933:210332..210489Clytia hemisphaericaexon
TCONS_00065003-exon-scaffold_428-1575043694:210332..210489TCONS_00065003-exon-scaffold_428-1575043694:210332..210489Clytia hemisphaericaexon
TCONS_00065003-exon-scaffold_428-1491911889:212061..212135TCONS_00065003-exon-scaffold_428-1491911889:212061..212135Clytia hemisphaericaexon
TCONS_00065003-exon-scaffold_428-1510915933:212061..212135TCONS_00065003-exon-scaffold_428-1510915933:212061..212135Clytia hemisphaericaexon
TCONS_00065003-exon-scaffold_428-1575043694:212061..212135TCONS_00065003-exon-scaffold_428-1575043694:212061..212135Clytia hemisphaericaexon
TCONS_00065003-exon-scaffold_428-1491911889:212623..212662TCONS_00065003-exon-scaffold_428-1491911889:212623..212662Clytia hemisphaericaexon
TCONS_00065003-exon-scaffold_428-1510915933:212623..212662TCONS_00065003-exon-scaffold_428-1510915933:212623..212662Clytia hemisphaericaexon
TCONS_00065003-exon-scaffold_428-1575043694:212623..212662TCONS_00065003-exon-scaffold_428-1575043694:212623..212662Clytia hemisphaericaexon
TCONS_00065003-exon-scaffold_428-1491911889:213779..214004TCONS_00065003-exon-scaffold_428-1491911889:213779..214004Clytia hemisphaericaexon
TCONS_00065003-exon-scaffold_428-1510915933:213779..214004TCONS_00065003-exon-scaffold_428-1510915933:213779..214004Clytia hemisphaericaexon
TCONS_00065003-exon-scaffold_428-1575043694:213779..214004TCONS_00065003-exon-scaffold_428-1575043694:213779..214004Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_428supercontigscaffold_428:194100..214004 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.185064	0.00178318	2.49326	0.835727	0	2.13996e-07	6.86754	5.26754e-08	0	0	0	0	0	0	0	0	0	0	0.0046363	0	2.61589	4.07632	15.2702	8.88284	21.9703	18.0591	3.95084	6.89034	30.2593	20.2352
Blast
[Close]
BLAST of TCONS_00065003 vs. Swiss-Prot (Human)
Match: AL1A3 (Aldehyde dehydrogenase family 1 member A3 OS=Homo sapiens GN=ALDH1A3 PE=1 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 1.325e-51
Identity = 80/121 (66.12%), Postives = 101/121 (83.47%), Query Frame = 2 
Query:    2 EREGFYIQPTVFADVTDEMTIAKQEIFGPVQSILKFKDIDEVIARANATAYGLGSGVLTKDIDKAMKVVNGIEAGTVWVNCYNYTHPQCPFGGFKQSGHGRELGKYALKEYTEVKQVTMKL 364
            E +G +I+PTVF++VTD M IAK+EIFGPVQ ILKFK I+EVI RAN+T YGL + V TK++DKA+K+ + +E+GTVW+NCYN  + Q PFGGFK SG+GRELG+YAL EYTEVK VT+KL
Sbjct:  387 EDKGLFIKPTVFSEVTDNMRIAKEEIFGPVQPILKFKSIEEVIKRANSTDYGLTAAVFTKNLDKALKLASALESGTVWINCYNALYAQAPFGGFKMSGNGRELGEYALAEYTEVKTVTIKL 507
The following BLAST results are available for this feature:
BLAST of TCONS_00065003 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AL1A31.325e-5166.12Aldehyde dehydrogenase family 1 member A3 OS=Homo ... [more]
back to top