TCONS_00065009 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065009
Unique NameTCONS_00065009
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1069

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065009 ID=TCONS_00065009|Name=TCONS_00065009|organism=Clytia hemisphaerica|type=transcript|length=1069bp
ttcagCGAAAAGGAAGAGTATGAAATAATCTTAAAATTATAATTCTCAAC
aaagcaagaaaaaaagtttaatcTGTGTTGGTCAAGGTTCACTTCTCACC
ACTAAGCGACAATCTTCGAATTTTGGGAATTTCAGGTACTGGAGGTGGAG
TTGGAGGTGGAGCACTCGTGGCTGGTGGTGTTGGGACGCTGGGAGAGGGT
GTGATTGAACTTTGCTGTGGTGGCATCGAGCTTTGCGGTGGCGGCATCGA
GCTTTGTAGTGGTGGCATTGAGCTTGGTCTTGGCGGCATCGAGCTTTGTA
GTGGTGGCATTGAGCTTGGTCGTGGTGGCATCGAGCTTTGTGGTGGTGGC
ATTGAGCTTTGTCGTGGTGGCATTGAGCTTGGTCGTGATAGCATTGAACT
TTGTGGTGGTGGCATTGAGCTTTGTGGTGGCGGCATTGAGCTTGGTCGTG
GCGGCATCGAGCTTTGTGGTGGTGGCATTGAGCTTTGTGGTGGTTGCATT
GAACTTAGTCGTGGTGGCATTGAGCTTGGTGGTGGTGGCATCGAGCTTTG
TGGAGGTGGCATTGAACTTGGTCGTGGCGGCATCGAGCTTTGTAGTGGTG
GCATTGAGCTTGGTGGTGGTGGCATCGAGCTTTGTGGTGGCGGCATCGAG
CTTTGTAGTGGTGGCATTGAACTTGGTCGTGGCGGCATCGAGCTTTGTAG
TGGTGGCATTGAGCTTGGTCGTGGTGGCATTGAGCTTTGCGGTGGCTGCA
TTGAACTTTGTGGTGGTTGCATTGAACTTGGTCGTGGCGGCATTGAGCTT
TGTGGTGGTGGCATTGAActtggtggtggtggtggcaTCGAActtggtgg
tggtggtggcaTTGAACTTTGTGGTGGCTGCATTGAGCTTTGTGGTAGTG
GCATTGAACTTGGTCGTGGCGGCATTGAGCTTTGTGGTGGTGGCATTGAA
CTTTGTGGTGGTGGTGGCATTGAACTTTGTCGTGGCGGCATCGAACTCTG
TGGTGGTGGCATCGAGCTTTGTGGTGGTGGCATTGAACTTGGTCGTGGTG
GAGGCATCGAACTTTGCGG
Run BLAST on NCBI

transcript from alignment at scaffold_428:298665..300069+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065009 ID=TCONS_00065009|Name=TCONS_00065009|organism=Clytia hemisphaerica|type=transcript|length=1405bp|location=Sequence derived from alignment at scaffold_428:298665..300069+ (Clytia hemisphaerica)
ttcagCGAAAAGGAAGAGTATGAAATAATCTTAAAATTATAATTCTCAAC
aaagcaagaaaaaaagtttaatcTGTGTTGGTCAAGGTTCACTTCTCACC
ACTAAGCGACAATCTTCGAATTTTGGGAATTTCAGGTACTGGAGGTGGAG
TTGGAGGTGGAGCACTCGTGGCTGGTGGTGTTGGGACGCTGGGAGAGGGT
GTGATTGAACTTTGCTGTGGTGGCATCGAGCTTTGCGGTGGCGGCATCGA
GCTTTGTAGTGGTGGCATTGAGCTTGGTCTTGGCGGCATCGAGCTTTGTA
GTGGTGGCATTGAGCTTGGTCGTGGTGGCATCGAGCTTTGTGGTGGTGGC
ATTGAGCTTTGTCGTGGTGGCATTGAGCTTGGTCGTGATAGCATTGAACT
TTGTGGTGGTGGCATTGAGCTTTGTGGTGGCGGCATTGAGCTTGGTCGTG
GTGGCATTGAACTTTGTGGTGGTTGCATTGAACTTGGTCGTGGTGGCATT
GAACTATGTGGTGGTTGCATTGAGCTTGGTTGTGGTGGCATCGAGCTTTG
CGGTGGTGGCATTGAACTTGGTCGTGGTGGCATCGAGCTTTGTGGTGGTG
GTATTGAACTTGGTCGTGGTGGCATCGAGCTTTGTGGTGGTGGCATTGAA
CTTTGTGGTGGTTGCATTGAGCTTTGTGGTGGTTGCATTGAACTTGGTCG
TGGTGGCATCGAACTTTGTGGTGGTGGCATCGAACTTTGTGGTGGTGGCA
TTGAACTTGGTCGTGGTGGCATCGAGCTTTGTGGAGGCGGCATCGAGCTT
TGTGGTGGTGGCATTGAGCTTTGTGGTGGTTGCATTGAACTTAGTCGTGG
TGGCATTGAGCTTGGTGGTGGTGGCATCGAGCTTTGTGGAGGTGGCATTG
AACTTGGTCGTGGCGGCATCGAGCTTTGTAGTGGTGGCATTGAGCTTGGT
GGTGGTGGCATCGAGCTTTGTGGTGGCGGCATCGAGCTTTGTAGTGGTGG
CATTGAACTTGGTCGTGGCGGCATCGAGCTTTGTAGTGGTGGCATTGAGC
TTGGTCGTGGTGGCATTGAGCTTTGCGGTGGCTGCATTGAACTTTGTGGT
GGTTGCATTGAACTTGGTCGTGGCGGCATTGAGCTTTGTGGTGGTGGCAT
TGAActtggtggtggtggtggcaTCGAActtggtggtggtggtggcaTTG
AACTTTGTGGTGGCTGCATTGAGCTTTGTGGTAGTGGCATTGAACTTGGT
CGTGGCGGCATTGAGCTTTGTGGTGGTGGCATTGAACTTTGTGGTGGTGG
TGGCATTGAACTTTGTCGTGGCGGCATCGAACTCTGTGGTGGTGGCATCG
AGCTTTGTGGTGGTGGCATTGAACTTGGTCGTGGTGGAGGCATCGAACTT
TGCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040758XLOC_040758Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065009-exon-scaffold_428-1491911889:298665..299114TCONS_00065009-exon-scaffold_428-1491911889:298665..299114Clytia hemisphaericaexon
TCONS_00065009-exon-scaffold_428-1510915933:298665..299114TCONS_00065009-exon-scaffold_428-1510915933:298665..299114Clytia hemisphaericaexon
TCONS_00065009-exon-scaffold_428-1575043694:298665..299114TCONS_00065009-exon-scaffold_428-1575043694:298665..299114Clytia hemisphaericaexon
TCONS_00065009-exon-scaffold_428-1491911889:299451..300069TCONS_00065009-exon-scaffold_428-1491911889:299451..300069Clytia hemisphaericaexon
TCONS_00065009-exon-scaffold_428-1510915933:299451..300069TCONS_00065009-exon-scaffold_428-1510915933:299451..300069Clytia hemisphaericaexon
TCONS_00065009-exon-scaffold_428-1575043694:299451..300069TCONS_00065009-exon-scaffold_428-1575043694:299451..300069Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_428supercontigscaffold_428:298665..300069 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0243303	0	0	0	0	0	0.320569	0	0.0881107	0.0604736	1.80884	1.77644	0.0601486	0.150988	0.0875954	0.0762428	4.87964	8.74712	0	0.167892	0	0.106783	0.0750787	0.154922	0	0	0	0.0888663
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065009 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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