TCONS_00065031 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065031
Unique NameTCONS_00065031
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length491

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065031 ID=TCONS_00065031|Name=TCONS_00065031|organism=Clytia hemisphaerica|type=transcript|length=491bp
TATAAATGAGGAAGAAAATCAGAGAGACTAAAAGGAGAAGTTCAAAATTT
AACGAGTAAAGCAAAAAGTCGATCGATTCTAAAATGGAAAAGTTGGCATG
GTTTTTAGTCGTTGGATTTGGATGTCTTTCGGTGTTTAATTTTGTACAGT
ATCAAGAGATCAATTCTCGTTTTGTGGAATTACAACAAAATTCTCAAGGT
GAGAAAACCAGGACTCGGAGGGATGTTGCAAACGATGAAAATGAGGATTG
GTCTTCGTTCTTTGATCAACAAAAACTCATCAAATTCATACAGAAGCaat
caaatcaaacaatttaCAAAAAGTAAACCAAATCTTGAAACATTTCACAT
CGAACCTTCCTGCAGAAAAGTTATGTAAAGATTTAGTCAAATGTGAGAAA
GGTAAAATGTTTTATCGATCTAAACTTATCGAATATCGATCTCTTCCCAA
TATATGTAAGTTCTCTATAGACAATTTCTCGTAGACCCGGT
Run BLAST on NCBI

transcript from alignment at scaffold_428:46087..46916-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065031 ID=TCONS_00065031|Name=TCONS_00065031|organism=Clytia hemisphaerica|type=transcript|length=830bp|location=Sequence derived from alignment at scaffold_428:46087..46916- (Clytia hemisphaerica)
TATAAATGAGGAAGAAAATCAGAGAGACTAAAAGGAGAAGTTCAAAATTT
AACGAGTAAAGCAAAAAGTCGATCGATTCTAAAATGGAAAAGTTGGCATG
GTTTTTAGTCGTTGGATTTGGATGTCTTTCGGTGTTTAATTTTGTACAGT
ATCAAGAGATCAATTCTCGTTTTGTGGAATTACAACAAAATTCTCAAGGT
AAATTTGCCTTTTTTGAAACTTTTTTTCTTTATTCACAAGATCATTGCAG
CTAAAGTGTATCTCAAAATAATTTGCAGCTGAGAAAAAAATGGCTGTAAC
TTTTGTCTCAGCTGCAAATTATTTTCAGACAGACTTTAGACCAAAATTGC
TGTCGAGTATGTGCAAACGAGGGTTTATTAGACATCCTGTATAAAACAGG
GTGATGCAGAAATGTCTAGTCTGGATCACAGACCTCTACAAAACAAACAG
CAGATAGTATAGGAACTCGGATCCGTTTCAAAAGGCTTCAGTTATAAGTG
AGCATTTTTGTACGGCATTCGAAAAATACATTTTCAGGTGAGAAAACCAG
GACTCGGAGGGATGTTGCAAACGATGAAAATGAGGATTGGTCTTCGTTCT
TTGATCAACAAAAACTCATCAAATTCATACAGAAGCAATCAAATCAAACA
ATTTACAAAAAGTAAACCAAATCTTGAAACATTTCACATCGAACCTTCCT
GCAGAAAAGTTATGTAAAGATTTAGTCAAATGTGAGAAAGGTAAAATGTT
TTATCGATCTAAACTTATCGAATATCGATCTCTTCCCAATATATGTAAGT
TCTCTATAGACAATTTCTCGTAGACCCGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040770XLOC_040770Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065031-exon-scaffold_428-1575043694:46719..46916TCONS_00065031-exon-scaffold_428-1575043694:46719..46916Clytia hemisphaericaexon
TCONS_00065031-exon-scaffold_428-1575043694:46087..46379TCONS_00065031-exon-scaffold_428-1575043694:46087..46379Clytia hemisphaericaexon
TCONS_00065031-exon-scaffold_428-1510915933:46719..46916TCONS_00065031-exon-scaffold_428-1510915933:46719..46916Clytia hemisphaericaexon
TCONS_00065031-exon-scaffold_428-1510915933:46087..46379TCONS_00065031-exon-scaffold_428-1510915933:46087..46379Clytia hemisphaericaexon
TCONS_00065031-exon-scaffold_428-1491911889:46719..46916TCONS_00065031-exon-scaffold_428-1491911889:46719..46916Clytia hemisphaericaexon
TCONS_00065031-exon-scaffold_428-1491911889:46087..46379TCONS_00065031-exon-scaffold_428-1491911889:46087..46379Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_428supercontigscaffold_428:46087..46916 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.04727	0	0	0.176988	0	0.213124	0.764526	1.16492	0.666149	1.68732	1.02158	5.52049	4.93336	20.2044	18.8379	6.23319	6.16316	7.83288	6.81166	8.00907	8.43379	10.1852	10.5602	0.367448	0.36193	3.46607	4.92437	73.2388	83.6578
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065031 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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