TCONS_00065033 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065033
Unique NameTCONS_00065033
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length487

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065033 ID=TCONS_00065033|Name=TCONS_00065033|organism=Clytia hemisphaerica|type=transcript|length=487bp
TGGACATCAAATAGAGAGCTCTTTACCCCTAAAATCTCCGTATAAATGAG
GAAGAAAATCAGAGAGACTAAAAGGAGAAGTTCAAAATTTAACGAGTAAA
GCAAAAAGTCGATCGATTCTAAAATGGAAAAGTTGGCATGGTTTTTAGTC
GTTGGATTTGGATGTCTTTCGGTGTTTAATTTTGTACAGTATCAAGAGAT
CAATTCTCGTTTTGTGGAATTACAACAAAATTCTCAAGGtaaatttgcct
tttttgaaactttttttctttattcacaAGATCATTGCAGCTAAAGTgta
tctcaaaataatttgcagctgagaaaaaaatggctgtaacttttgtctca
gctgcaaattattttcagACAGACTTTAGACCAAAATTGCTGTCGAGTAT
GTGCAAACGAGGGTTTATTAGACATCCTGTATAAAACAGGGTGATGCAGA
AATGTCTAGTCTggatcacagacctctacaaaacaaA
Run BLAST on NCBI

transcript from alignment at scaffold_428:46470..46956-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065033 ID=TCONS_00065033|Name=TCONS_00065033|organism=Clytia hemisphaerica|type=transcript|length=487bp|location=Sequence derived from alignment at scaffold_428:46470..46956- (Clytia hemisphaerica)
TGGACATCAAATAGAGAGCTCTTTACCCCTAAAATCTCCGTATAAATGAG
GAAGAAAATCAGAGAGACTAAAAGGAGAAGTTCAAAATTTAACGAGTAAA
GCAAAAAGTCGATCGATTCTAAAATGGAAAAGTTGGCATGGTTTTTAGTC
GTTGGATTTGGATGTCTTTCGGTGTTTAATTTTGTACAGTATCAAGAGAT
CAATTCTCGTTTTGTGGAATTACAACAAAATTCTCAAGGTAAATTTGCCT
TTTTTGAAACTTTTTTTCTTTATTCACAAGATCATTGCAGCTAAAGTGTA
TCTCAAAATAATTTGCAGCTGAGAAAAAAATGGCTGTAACTTTTGTCTCA
GCTGCAAATTATTTTCAGACAGACTTTAGACCAAAATTGCTGTCGAGTAT
GTGCAAACGAGGGTTTATTAGACATCCTGTATAAAACAGGGTGATGCAGA
AATGTCTAGTCTGGATCACAGACCTCTACAAAACAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040770XLOC_040770Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065033-exon-scaffold_428-1575043694:46470..46956TCONS_00065033-exon-scaffold_428-1575043694:46470..46956Clytia hemisphaericaexon
TCONS_00065033-exon-scaffold_428-1510915933:46470..46956TCONS_00065033-exon-scaffold_428-1510915933:46470..46956Clytia hemisphaericaexon
TCONS_00065033-exon-scaffold_428-1491911889:46470..46956TCONS_00065033-exon-scaffold_428-1491911889:46470..46956Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_428supercontigscaffold_428:46470..46956 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.75303	0.718547	0.366312	0.803062	0	0.407987	0	0.21163	0	0.291677	1.06734	0	0	0.216641	0.137102	1.75455	0.182384	0.203897	0	0	0.118597	1.33377	1.80902	1.16073	0	0.122971	1.54999	0.745788	1.1096	2.81071
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065033 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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