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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065055 ID=TCONS_00065055|Name=TCONS_00065055|organism=Clytia hemisphaerica|type=transcript|length=1088bp CATTACCAAGATCTGGCGCGCCACACTCCACCTTGGCTACTTCATCTCCG CATCACTTTAAAAAAGATTCCAACAATCACTCATCAATATTTAACAGGTC ATACAACACCTTCAACAAAATGGACTCTATTCTCCACataaaacaacaaa acacaacCGACCCCCAACAAGGGGGGAGTGAGAGATTACTCGATGATCCC GCTCCGACACTATTACCGACATCACCGACACCGGTGAATAATACCGACGT CGTTGACATCAACAATAACGAGCCATCAACTCCAAACACAACGCCCACAC CGCCTCAAAAACCATCCACCTTCAAGGACAATATCTTGATCCTTACCACA ACCATCTACGCAGCCATTTTAGGCTTTCTAGGTGGCCAAAAACAAACCAA CTTAAAAGACAATATCTTTGCCCTTGCCACAACCATCTACGCAGCCATTT TAGGCTTTCTAGGTGGCCTGCTCACCAAATGgacaaaattaaaacaaaaa attcattcttTTAACATCAACCTTGTTTACTATCTGTGCGGGTTTTTAGC ATTTAGCATAGTAATTTGTTTGTGCTATGCTGAGTTGGACGATGATATCG TTCGTTCCGAGACTACACACTTCGGTGATCGCCCTCTAACCGAACCTGAA GTTACCGAGAACAAAGTCATCAACCTCACTTTACCAATGGTAATCTCAAC AGTGGTAGCTTGTCTAGTTGGATCATTTGTGATATCAACCCAGAAGCTCA ATcttatcaatatttcaaaacCGAAATCGTTCAGCCGTATTNTACCAATG GTAATCTCAACAGTGGTAGCTTGTCTAGTTGGATCATTTGTGATATCAAC CCAGAAGCTCAATCTTATCAAGATTTCAAAACCGAAATCGTTCAGCCGTA TTATCATTGCATTTACATGCTTCTTATTGGTATCTTTGACCACATTTTGC TGGTACATGGAAATCATTAAAAACCCCTTAAGtttcaattGGCTTGTTGA TTCATTCAGCCCTCATGAATCACCATCCGAGTCATCGAGTTATTTCGAAC TTGAATGGGtttctaattattttcaaaaggaaGAGGCT Run BLAST on NCBI protein sequence of TCONS_00065055-protein >TCONS_00065055-protein ID=TCONS_00065055-protein|Name=TCONS_00065055-protein|organism=Clytia hemisphaerica|type=polypeptide|length=362bp
LPRSGAPHSTLATSSPHHFKKDSNNHSSIFNRSYNTFNKMDSILHIKQQN TTDPQQGGSERLLDDPAPTLLPTSPTPVNNTDVVDINNNEPSTPNTTPTP PQKPSTFKDNILILTTTIYAAILGFLGGQKQTNLKDNIFALATTIYAAIL GFLGGLLTKWTKLKQKIHSFNINLVYYLCGFLAFSIVICLCYAELDDDIV RSETTHFGDRPLTEPEVTENKVINLTLPMVISTVVACLVGSFVISTQKLN LINISKPKSFSRIXPMVISTVVACLVGSFVISTQKLNLIKISKPKSFSRI IIAFTCFLLVSLTTFCWYMEIIKNPLSFNWLVDSFSPHESPSESSSYFEL EWVSNYFQKEEA Run BLAST on NCBI transcript from alignment at scaffold_428:520278..522991- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065055 ID=TCONS_00065055|Name=TCONS_00065055|organism=Clytia hemisphaerica|type=transcript|length=2714bp|location=Sequence derived from alignment at scaffold_428:520278..522991- (Clytia hemisphaerica) CATTACCAAGATCTGGCGCGCCACACTCCACCTTGGCTACTTCATCTCCG
CATCACTTTAAAAAAGATTCCAACAATCACTCATCAATATTTAACAGGTC
ATACAACACCTTCAACAAAATGGACTCTGTAAGTAATTCAAACATAAAGA
ATACCCTCAGTGAAACAATAAGATGTCTTCATCTGGCACCTTAATGGAAC
TAATTCTCGGGGGGAATTTTCGCGGTTGAGACCCACTTTCTGCCGAAATT
CTTACATATTCCTAGGAGTTTATGAGGATTTTTAGGTAATAATTGTATTT
TGCGGAAATTAGTTCCCTTAAGGAGGTAAAAGTCTTTGGAAAACATTTCG
AAAGTAGCCCTTCTTTTCACCCTTCTTTGATTAGATTTCTAAAAAAATAT
TGTTAACGAACTCTCTCTCTGTCATGAAGTTTGAACCACCTTATATCAGA
ATATCAATCATATCAATGACAACTACAAATATAATGTTTTGATAGACTGG
ATAGCGCGATTAAGCGAACTTTAATGAACTTAGTGTCATCAAGACTTATC
AAAAAGCAAAGCACAGCAAAATGTAGACTTTAGCCAAGGTCTTATGTTAT
CATTCTTTCCACCCATAGATTCTCCACATAAAACAACAAAACACAACCGA
CCCCCAACAAGGGGGGAGTGAGAGATTACTCGATGATCCCGCTCCGACAC
TATTACCGACATCACCGACACCGGTGAATAATACCGACGTCGTTGACATC
AACAATAACGAGTAAGAAGTGTATTTCATATTTCCTCTAAGCCAATTCTT
GATTATGCCGGTTTTTCGTGAGCCCTGCTAGAGTATTCAAAAATTTAGCA
TTGTTTAGTATTGCATTCTATTTTATTGATTTGACTTTTCTAATTCTGTA
CAAAATTCCTATGCAAGGGCTCTGTTGTGGGAGATCGGTTAAGAATTTGC
GTGCTAAATAAATAACATTGTCTAGAAAATAAGTCCACTCTACTGAGCAG
CAACGATCAAAAGTTTCTCTTTATCTCCCCGTTCTTTGTGTAAAAGAATA
TATAATATCTTACGCAGTCAATCATTCAAAAATCTAAAGCAAAATAGTTT
AACCTAGTGAACTCTTTGAGGTACTAATTCCAACATTAATGCTTAAACTC
CTATCTTTATTTCTATATCATCCAGGCCATCAACTCCAAACACAACGCCC
ACACCGCCTCAAAAACCATCCACCTTCAAGGACAATATCTTGATCCTTAC
CACAACCATCTACGCAGCCATTTTAGGCTTTCTAGGTGGCCAAAAACAAA
CCAACTTAAAAGACAATATCTTTGCCCTTGCCACAACCATCTACGCAGCC
ATTTTAGGCTTTCTAGGTGGCCTGCTCACCAAATGGACAAAATTAAAACA
AAAAATTCATTCTTTTAACATCAACCTTGTTTACTATCTGTGCGGGTTTT
TAGCATTTAGCATAGTAATTTGTTTGTGCTATGCTGAGTTGGACGATGAT
ATCGTTCGGTAAGTGTCTCGTTTATATCTTCCAAGCAGAAAGTTTTCCGT
GCATTAATCACTGTTAACGTACTTACTGTATAGACAGTGCAGTGTAAAGT
GGAAAAACAAAGTTTTTTAGANCAAAAATCTTCAAGAAAAACAAGAAAAA
CACCTTACAAATCAATTATTAAAGTTGCTTAAATCAAAGGGTTGAATTTG
AAATGATTTTTCTTCCACTATTTATCAATTTTCTACAAACATTTTGGAGG
ATGATAATACCAGGATCTTTTAAATATTTTTCATTGGTTATATATTATCT
TTCTTTCAGTTCCGAGACTACACACTTCGGTGATCGCCCTCTAACCGAAC
CTGAAGTTACCGAGAACAAAGTCATCAACCTCACTTTACCAATGGTAATC
TCAACAGTGGTAGCTTGTCTAGTTGGATCATTTGTGATATCAACCCAGAA
GCTCAATCTTATCAATATTTCAAAACCGAAATCGTTCAGCCGTATTNTAC
CAATGGTAATCTCAACAGTGGTAGCTTGTCTAGTTGGATCATTTGTGATA
TCAACCCAGAAGCTCAATCTTATCAAGATTTCAAAACCGAAATCGTTCAG
CCGTATTATCATTGCATTTACATGCTTCTTATTGGTATCTTTGACCACAT
TTTGCTGGTACATGGAAATCATTAAAAACCCCTTAAGGTAATATTGTTTT
TGTAATTCCATATTTTATTCAAAATATCATCAATTCAAAATTGGTTTTAG
TCGGAACATTAGTTTAATTACTTTAAGGGAACTTATCATGACTAATTCTC
GCCAAAATTAAAAAATATATTGCCACATTGCCAAGATAAGTAAGCATATA
CTAGATGTCACCAGCGTCTTTTGATTGTTAGTGAGGTGCTCGCTACAAAA
TATTATTTTTCATGATTTACTATACTAAGACCTGAGTTTTGCGTAAAACA
CTTATATTTTTATAGGCAAAAGAGAATATTATTTCCTCTGCCAATTTTAA
AGATTGCTGTCTCGCCAAAATAAGTTCCCCGCCAAATTTGTTTTTTTTAG
GATTTTTGCTACCCGCCAAATTTATATAATCAGCTTTCTCTCTATTAAAT
ATTTTCAGTTTCAATTGGCTTGTTGATTCATTCAGCCCTCATGAATCACC
ATCCGAGTCATCGAGTTATTTCGAACTTGAATGGGTTTCTAATTATTTTC
AAAAGGAAGAGGCT Coding sequence (CDS) from alignment at scaffold_428:520278..522991- >TCONS_00065055 ID=TCONS_00065055|Name=TCONS_00065055|organism=Clytia hemisphaerica|type=CDS|length=5430bp|location=Sequence derived from alignment at scaffold_428:520278..522991- (Clytia hemisphaerica) TTTCAATTGGCTTGTTGATTCATTCAGCCCTCATGAATCACCATCCGAGT CATCGAGTTATTTCGAACTTGAATGGGTTTCTAATTATTTTCAAAAGGAA GAGGCTTTCCGAGACTACACACTTCGGTGATCGCCCTCTAACCGAACCTG AAGTTACCGAGAACAAAGTCATCAACCTCACTTTACCAATGGTAATCTCA ACAGTGGTAGCTTGTCTAGTTGGATCATTTGTGATATCAACCCAGAAGCT CAATCTTATCAATATTTCAAAACCGAAATCGTTCAGCCGTATTNTACCAA TGGTAATCTCAACAGTGGTAGCTTGTCTAGTTGGATCATTTGTGATATCA ACCCAGAAGCTCAATCTTATCAAGATTTCAAAACCGAAATCGTTCAGCCG TATTATCATTGCATTTACATGCTTCTTATTGGTATCTTTGACCACATTTT GCTGGTACATGGAAATCATTAAAAACCCCTTAAGGCCATCAACTCCAAAC ACAACGCCCACACCGCCTCAAAAACCATCCACCTTCAAGGACAATATCTT GATCCTTACCACAACCATCTACGCAGCCATTTTAGGCTTTCTAGGTGGCC AAAAACAAACCAACTTAAAAGACAATATCTTTGCCCTTGCCACAACCATC TACGCAGCCATTTTAGGCTTTCTAGGTGGCCTGCTCACCAAATGGACAAA ATTAAAACAAAAAATTCATTCTTTTAACATCAACCTTGTTTACTATCTGT GCGGGTTTTTAGCATTTAGCATAGTAATTTGTTTGTGCTATGCTGAGTTG GACGATGATATCGTTCGATTCTCCACATAAAACAACAAAACACAACCGAC CCCCAACAAGGGGGGAGTGAGAGATTACTCGATGATCCCGCTCCGACACT ATTACCGACATCACCGACACCGGTGAATAATACCGACGTCGTTGACATCA ACAATAACGATTACCAAGATCTGGCGCGCCACACTCCACCTTGGCTACTT CATCTCCGCATCACTTTAAAAAAGATTCCAACAATCACTCATCAATATTT AACAGGTCATACAACACCTTCAACAAAATGGACTCTTTTCAATTGGCTTG TTGATTCATTCAGCCCTCATGAATCACCATCCGAGTCATCGAGTTATTTC GAACTTGAATGGGTTTCTAATTATTTTCAAAAGGAAGAGGCTTTCCGAGA CTACACACTTCGGTGATCGCCCTCTAACCGAACCTGAAGTTACCGAGAAC AAAGTCATCAACCTCACTTTACCAATGGTAATCTCAACAGTGGTAGCTTG TCTAGTTGGATCATTTGTGATATCAACCCAGAAGCTCAATCTTATCAATA TTTCAAAACCGAAATCGTTCAGCCGTATTNTACCAATGGTAATCTCAACA GTGGTAGCTTGTCTAGTTGGATCATTTGTGATATCAACCCAGAAGCTCAA TCTTATCAAGATTTCAAAACCGAAATCGTTCAGCCGTATTATCATTGCAT TTACATGCTTCTTATTGGTATCTTTGACCACATTTTGCTGGTACATGGAA ATCATTAAAAACCCCTTAAGGCCATCAACTCCAAACACAACGCCCACACC GCCTCAAAAACCATCCACCTTCAAGGACAATATCTTGATCCTTACCACAA CCATCTACGCAGCCATTTTAGGCTTTCTAGGTGGCCAAAAACAAACCAAC TTAAAAGACAATATCTTTGCCCTTGCCACAACCATCTACGCAGCCATTTT AGGCTTTCTAGGTGGCCTGCTCACCAAATGGACAAAATTAAAACAAAAAA TTCATTCTTTTAACATCAACCTTGTTTACTATCTGTGCGGGTTTTTAGCA TTTAGCATAGTAATTTGTTTGTGCTATGCTGAGTTGGACGATGATATCGT TCGATTCTCCACATAAAACAACAAAACACAACCGACCCCCAACAAGGGGG GAGTGAGAGATTACTCGATGATCCCGCTCCGACACTATTACCGACATCAC CGACACCGGTGAATAATACCGACGTCGTTGACATCAACAATAACGATTAC CAAGATCTGGCGCGCCACACTCCACCTTGGCTACTTCATCTCCGCATCAC TTTAAAAAAGATTCCAACAATCACTCATCAATATTTAACAGGTCATACAA CACCTTCAACAAAATGGACTCTTTTCAATTGGCTTGTTGATTCATTCAGC CCTCATGAATCACCATCCGAGTCATCGAGTTATTTCGAACTTGAATGGGT TTCTAATTATTTTCAAAAGGAAGAGGCTTTCCGAGACTACACACTTCGGT GATCGCCCTCTAACCGAACCTGAAGTTACCGAGAACAAAGTCATCAACCT CACTTTACCAATGGTAATCTCAACAGTGGTAGCTTGTCTAGTTGGATCAT TTGTGATATCAACCCAGAAGCTCAATCTTATCAATATTTCAAAACCGAAA TCGTTCAGCCGTATTNTACCAATGGTAATCTCAACAGTGGTAGCTTGTCT AGTTGGATCATTTGTGATATCAACCCAGAAGCTCAATCTTATCAAGATTT CAAAACCGAAATCGTTCAGCCGTATTATCATTGCATTTACATGCTTCTTA TTGGTATCTTTGACCACATTTTGCTGGTACATGGAAATCATTAAAAACCC CTTAAGGCCATCAACTCCAAACACAACGCCCACACCGCCTCAAAAACCAT CCACCTTCAAGGACAATATCTTGATCCTTACCACAACCATCTACGCAGCC ATTTTAGGCTTTCTAGGTGGCCAAAAACAAACCAACTTAAAAGACAATAT CTTTGCCCTTGCCACAACCATCTACGCAGCCATTTTAGGCTTTCTAGGTG GCCTGCTCACCAAATGGACAAAATTAAAACAAAAAATTCATTCTTTTAAC ATCAACCTTGTTTACTATCTGTGCGGGTTTTTAGCATTTAGCATAGTAAT TTGTTTGTGCTATGCTGAGTTGGACGATGATATCGTTCGATTCTCCACAT AAAACAACAAAACACAACCGACCCCCAACAAGGGGGGAGTGAGAGATTAC TCGATGATCCCGCTCCGACACTATTACCGACATCACCGACACCGGTGAAT AATACCGACGTCGTTGACATCAACAATAACGATTACCAAGATCTGGCGCG CCACACTCCACCTTGGCTACTTCATCTCCGCATCACTTTAAAAAAGATTC CAACAATCACTCATCAATATTTAACAGGTCATACAACACCTTCAACAAAA TGGACTCTTTTCAATTGGCTTGTTGATTCATTCAGCCCTCATGAATCACC ATCCGAGTCATCGAGTTATTTCGAACTTGAATGGGTTTCTAATTATTTTC AAAAGGAAGAGGCTTTCCGAGACTACACACTTCGGTGATCGCCCTCTAAC CGAACCTGAAGTTACCGAGAACAAAGTCATCAACCTCACTTTACCAATGG TAATCTCAACAGTGGTAGCTTGTCTAGTTGGATCATTTGTGATATCAACC CAGAAGCTCAATCTTATCAATATTTCAAAACCGAAATCGTTCAGCCGTAT TNTACCAATGGTAATCTCAACAGTGGTAGCTTGTCTAGTTGGATCATTTG TGATATCAACCCAGAAGCTCAATCTTATCAAGATTTCAAAACCGAAATCG TTCAGCCGTATTATCATTGCATTTACATGCTTCTTATTGGTATCTTTGAC CACATTTTGCTGGTACATGGAAATCATTAAAAACCCCTTAAGGCCATCAA CTCCAAACACAACGCCCACACCGCCTCAAAAACCATCCACCTTCAAGGAC AATATCTTGATCCTTACCACAACCATCTACGCAGCCATTTTAGGCTTTCT AGGTGGCCAAAAACAAACCAACTTAAAAGACAATATCTTTGCCCTTGCCA CAACCATCTACGCAGCCATTTTAGGCTTTCTAGGTGGCCTGCTCACCAAA TGGACAAAATTAAAACAAAAAATTCATTCTTTTAACATCAACCTTGTTTA CTATCTGTGCGGGTTTTTAGCATTTAGCATAGTAATTTGTTTGTGCTATG CTGAGTTGGACGATGATATCGTTCGATTCTCCACATAAAACAACAAAACA CAACCGACCCCCAACAAGGGGGGAGTGAGAGATTACTCGATGATCCCGCT CCGACACTATTACCGACATCACCGACACCGGTGAATAATACCGACGTCGT TGACATCAACAATAACGATTACCAAGATCTGGCGCGCCACACTCCACCTT GGCTACTTCATCTCCGCATCACTTTAAAAAAGATTCCAACAATCACTCAT CAATATTTAACAGGTCATACAACACCTTCAACAAAATGGACTCTTTTCAA TTGGCTTGTTGATTCATTCAGCCCTCATGAATCACCATCCGAGTCATCGA GTTATTTCGAACTTGAATGGGTTTCTAATTATTTTCAAAAGGAAGAGGCT TTCCGAGACTACACACTTCGGTGATCGCCCTCTAACCGAACCTGAAGTTA CCGAGAACAAAGTCATCAACCTCACTTTACCAATGGTAATCTCAACAGTG GTAGCTTGTCTAGTTGGATCATTTGTGATATCAACCCAGAAGCTCAATCT TATCAATATTTCAAAACCGAAATCGTTCAGCCGTATTNTACCAATGGTAA TCTCAACAGTGGTAGCTTGTCTAGTTGGATCATTTGTGATATCAACCCAG AAGCTCAATCTTATCAAGATTTCAAAACCGAAATCGTTCAGCCGTATTAT CATTGCATTTACATGCTTCTTATTGGTATCTTTGACCACATTTTGCTGGT ACATGGAAATCATTAAAAACCCCTTAAGGCCATCAACTCCAAACACAACG CCCACACCGCCTCAAAAACCATCCACCTTCAAGGACAATATCTTGATCCT TACCACAACCATCTACGCAGCCATTTTAGGCTTTCTAGGTGGCCAAAAAC AAACCAACTTAAAAGACAATATCTTTGCCCTTGCCACAACCATCTACGCA GCCATTTTAGGCTTTCTAGGTGGCCTGCTCACCAAATGGACAAAATTAAA ACAAAAAATTCATTCTTTTAACATCAACCTTGTTTACTATCTGTGCGGGT TTTTAGCATTTAGCATAGTAATTTGTTTGTGCTATGCTGAGTTGGACGAT GATATCGTTCGATTCTCCACATAAAACAACAAAACACAACCGACCCCCAA CAAGGGGGGAGTGAGAGATTACTCGATGATCCCGCTCCGACACTATTACC GACATCACCGACACCGGTGAATAATACCGACGTCGTTGACATCAACAATA ACGATTACCAAGATCTGGCGCGCCACACTCCACCTTGGCTACTTCATCTC CGCATCACTTTAAAAAAGATTCCAACAATCACTCATCAATATTTAACAGG TCATACAACACCTTCAACAAAATGGACTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00065055-exon-scaffold_428-1575043694:522864..522991 | TCONS_00065055-exon-scaffold_428-1575043694:522864..522991 | Clytia hemisphaerica | exon |
TCONS_00065055-exon-scaffold_428-1575043694:522231..522373 | TCONS_00065055-exon-scaffold_428-1575043694:522231..522373 | Clytia hemisphaerica | exon |
TCONS_00065055-exon-scaffold_428-1575043694:521484..521816 | TCONS_00065055-exon-scaffold_428-1575043694:521484..521816 | Clytia hemisphaerica | exon |
TCONS_00065055-exon-scaffold_428-1575043694:520805..521182 | TCONS_00065055-exon-scaffold_428-1575043694:520805..521182 | Clytia hemisphaerica | exon |
TCONS_00065055-exon-scaffold_428-1575043694:520278..520383 | TCONS_00065055-exon-scaffold_428-1575043694:520278..520383 | Clytia hemisphaerica | exon |
TCONS_00065055-exon-scaffold_428-1510915933:522864..522991 | TCONS_00065055-exon-scaffold_428-1510915933:522864..522991 | Clytia hemisphaerica | exon |
TCONS_00065055-exon-scaffold_428-1510915933:522231..522373 | TCONS_00065055-exon-scaffold_428-1510915933:522231..522373 | Clytia hemisphaerica | exon |
TCONS_00065055-exon-scaffold_428-1510915933:521484..521816 | TCONS_00065055-exon-scaffold_428-1510915933:521484..521816 | Clytia hemisphaerica | exon |
TCONS_00065055-exon-scaffold_428-1510915933:520805..521182 | TCONS_00065055-exon-scaffold_428-1510915933:520805..521182 | Clytia hemisphaerica | exon |
TCONS_00065055-exon-scaffold_428-1510915933:520278..520383 | TCONS_00065055-exon-scaffold_428-1510915933:520278..520383 | Clytia hemisphaerica | exon |
TCONS_00065055-exon-scaffold_428-1491911889:522864..522991 | TCONS_00065055-exon-scaffold_428-1491911889:522864..522991 | Clytia hemisphaerica | exon |
TCONS_00065055-exon-scaffold_428-1491911889:522231..522373 | TCONS_00065055-exon-scaffold_428-1491911889:522231..522373 | Clytia hemisphaerica | exon |
TCONS_00065055-exon-scaffold_428-1491911889:521484..521816 | TCONS_00065055-exon-scaffold_428-1491911889:521484..521816 | Clytia hemisphaerica | exon |
TCONS_00065055-exon-scaffold_428-1491911889:520805..521182 | TCONS_00065055-exon-scaffold_428-1491911889:520805..521182 | Clytia hemisphaerica | exon |
TCONS_00065055-exon-scaffold_428-1491911889:520278..520383 | TCONS_00065055-exon-scaffold_428-1491911889:520278..520383 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_428 | supercontig | scaffold_428:520278..522991 - |
Blast
The following BLAST results are available for this feature:
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