TCONS_00065060 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065060
Unique NameTCONS_00065060
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1817

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065060 ID=TCONS_00065060|Name=TCONS_00065060|organism=Clytia hemisphaerica|type=transcript|length=1817bp
AAGAAGTCTTAGTGCGAAAATGGGAATCTAATGCAAAACGACTATATGCC
AGCTAACCTCAGCTATAACAGTAACTAACATTTTTTAATCTTCTATCTTT
AGATAAAACACGACTACAACTTTATTATGTAAAAAgacgaaagtaaaaaa
aaaaacacaaaaagatGACATCATCCCACTTCATCAACCATACTCTACAT
TACACACACCACTTTAACGGTACGAATCATACTGGCCATCATACGAATGG
CTATCACAACGATTCATTGCATCATAACAATTCATTACATCATATGCAAC
AAAATATGCCACCGCCTATTATCCCATTATGGTTCCATAAACTGATATTT
GCATTGTATATCTTACTATCTTGTGTCGGTGGCATCGGTAACTTTCTTGT
TTGTTTAGTGCTTATACGCCGTAAACAACGTGTACGTAGTATACATTTAT
TAACGTTAAATCTAGCTGTATCAGATCTTATAGTCTGCATAATATACGTA
CCCACACAAATGTATCAAATCCAAGTCAACTATTTATGGGACCTTGGCGT
TATAGCATGCGGCGTGAGTTTCGGCGTCAATTCGTGTACCGTGAATGCGT
CTATTGGTACGTTAATCGTAATCACGTATGACCGTTACGTAGCTGTCACG
CAACCGATGGTAGCTCACCAGCGTAACACAAAGCGAACTAAAATCTTGAT
ATTCGTAGTATGGTTGATATCAGGTCTTATTACGATACCGTTAATGATCG
TTGCAGATATACACCAGGGCTATTGCACTGAACACTGGCCCAGTCGTGAA
ATGGGGAATATCTACTGGGTTATTATATTCGTTGTCCAGCTGCCTTTACC
AATGTTGTATATAGTCGCTGCTTATTGTATTATTGTGTATGCTGTTAAAA
GCTCACATTCGCAATTTGAACTTGTTAAACTACATAACGATCTACAGAAA
CAGGAAGAGAGAAAATTGAGAAATGGAGCTTGTTGCCATAATGATACAAA
CAATAACAAAGATGGTAACCAAGCTGTGGATATGGACGAGTCAGTATTCT
CGAGTAGATTTAATAACAAGACCCGTTTACCGAATCGAAATAACGGACGT
CGGTTATCCGTAACACGTCGTAAAAGACGTCGTAGTAGTAACGGTTCACG
TAAGAAACAGCAGaataaattattgaaaatgtccATTATATTGGTCATTG
CATATACAGTATGTGTCACACCACAACACGCCGTTTTCTTTGCAGCAACG
TACGGAACGTTAGCTTTGAAACCGTACGCAGCATTCTTTTTTAttgtatc
aaactttttgatgAGTTTAAATTCAGCAATCAATCCTTTGATCTATGGGA
CTTTGAATGAcgaaatgaaaaaatcattggTTAGATTGTTTAAATGTTCG
TCGGCTGATGACAATAAATTGACAAGGAATGTTAGTAGCGCGCTAACGAC
GTTGCGTGAAACAATACGTCTCCGGTTTAAGCCGTCGTCAACTTTCGGTA
AAAGCCGACTTTTGCAACGGACCCGGAATATGACAGAAACGTCGGCTTGT
TAACAGGTACAAGAAGTATCGGTAgcaagataaaaaatgaaattgtaaat
aaaaagataatatttATAATCTAATGAAAACACAAACACGTTTAATACCC
ACTTTATAAACATCACAAAATTCAATCGTTGGAAATTTAATGTTAGTGCT
TCTAGAAGTGCAGACTGCAGCAACCAGAGTGATAGTTTTCGACTTGTTTA
TTTTCCATTTCAGTCCATTTTCATTGGAAagcaaactttttttgaattat
ttcagTCTGGGATTCTT
Run BLAST on NCBI

protein sequence of TCONS_00065060-protein

>TCONS_00065060-protein ID=TCONS_00065060-protein|Name=TCONS_00065060-protein|organism=Clytia hemisphaerica|type=polypeptide|length=462bp
MTSSHFINHTLHYTHHFNGTNHTGHHTNGYHNDSLHHNNSLHHMQQNMPP
PIIPLWFHKLIFALYILLSCVGGIGNFLVCLVLIRRKQRVRSIHLLTLNL
AVSDLIVCIIYVPTQMYQIQVNYLWDLGVIACGVSFGVNSCTVNASIGTL
IVITYDRYVAVTQPMVAHQRNTKRTKILIFVVWLISGLITIPLMIVADIH
QGYCTEHWPSREMGNIYWVIIFVVQLPLPMLYIVAAYCIIVYAVKSSHSQ
FELVKLHNDLQKQEERKLRNGACCHNDTNNNKDGNQAVDMDESVFSSRFN
NKTRLPNRNNGRRLSVTRRKRRRSSNGSRKKQQNKLLKMSIILVIAYTVC
VTPQHAVFFAATYGTLALKPYAAFFFIVSNFLMSLNSAINPLIYGTLNDE
MKKSLVRLFKCSSADDNKLTRNVSSALTTLRETIRLRFKPSSTFGKSRLL
QRTRNMTETSAC
Run BLAST on NCBI

transcript from alignment at scaffold_428:67626..69442

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065060 ID=TCONS_00065060|Name=TCONS_00065060|organism=Clytia hemisphaerica|type=transcript|length=1817bp|location=Sequence derived from alignment at scaffold_428:67626..69442 (Clytia hemisphaerica)
AAGAATCCCAGActgaaataattcaaaaaaagtttgctTTCCAATGAAAA
TGGACTGAAATGGAAAATAAACAAGTCGAAAACTATCACTCTGGTTGCTG
CAGTCTGCACTTCTAGAAGCACTAACATTAAATTTCCAACGATTGAATTT
TGTGATGTTTATAAAGTGGGTATTAAACGTGTTTGTGTTTTCATTAGATT
ATaaatattatctttttatttacaatttcattttttatcttgcTACCGAT
ACTTCTTGTACCTGTTAACAAGCCGACGTTTCTGTCATATTCCGGGTCCG
TTGCAAAAGTCGGCTTTTACCGAAAGTTGACGACGGCTTAAACCGGAGAC
GTATTGTTTCACGCAACGTCGTTAGCGCGCTACTAACATTCCTTGTCAAT
TTATTGTCATCAGCCGACGAACATTTAAACAATCTAAccaatgatttttt
catttcgTCATTCAAAGTCCCATAGATCAAAGGATTGATTGCTGAATTTA
AACTcatcaaaaagtttgatacaaTAAAAAAGAATGCTGCGTACGGTTTC
AAAGCTAACGTTCCGTACGTTGCTGCAAAGAAAACGGCGTGTTGTGGTGT
GACACATACTGTATATGCAATGACCAATATAATggacattttcaataatt
tattCTGCTGTTTCTTACGTGAACCGTTACTACTACGACGTCTTTTACGA
CGTGTTACGGATAACCGACGTCCGTTATTTCGATTCGGTAAACGGGTCTT
GTTATTAAATCTACTCGAGAATACTGACTCGTCCATATCCACAGCTTGGT
TACCATCTTTGTTATTGTTTGTATCATTATGGCAACAAGCTCCATTTCTC
AATTTTCTCTCTTCCTGTTTCTGTAGATCGTTATGTAGTTTAACAAGTTC
AAATTGCGAATGTGAGCTTTTAACAGCATACACAATAATACAATAAGCAG
CGACTATATACAACATTGGTAAAGGCAGCTGGACAACGAATATAATAACC
CAGTAGATATTCCCCATTTCACGACTGGGCCAGTGTTCAGTGCAATAGCC
CTGGTGTATATCTGCAACGATCATTAACGGTATCGTAATAAGACCTGATA
TCAACCATACTACGAATATCAAGATTTTAGTTCGCTTTGTGTTACGCTGG
TGAGCTACCATCGGTTGCGTGACAGCTACGTAACGGTCATACGTGATTAC
GATTAACGTACCAATAGACGCATTCACGGTACACGAATTGACGCCGAAAC
TCACGCCGCATGCTATAACGCCAAGGTCCCATAAATAGTTGACTTGGATT
TGATACATTTGTGTGGGTACGTATATTATGCAGACTATAAGATCTGATAC
AGCTAGATTTAACGTTAATAAATGTATACTACGTACACGTTGTTTACGGC
GTATAAGCACTAAACAAACAAGAAAGTTACCGATGCCACCGACACAAGAT
AGTAAGATATACAATGCAAATATCAGTTTATGGAACCATAATGGGATAAT
AGGCGGTGGCATATTTTGTTGCATATGATGTAATGAATTGTTATGATGCA
ATGAATCGTTGTGATAGCCATTCGTATGATGGCCAGTATGATTCGTACCG
TTAAAGTGGTGTGTGTAATGTAGAGTATGGTTGATGAAGTGGGATGATGT
CatctttttgtgtttttttttttactttcgtcTTTTTACATAATAAAGTT
GTAGTCGTGTTTTATCTAAAGATAGAAGATTAAAAAATGTTAGTTACTGT
TATAGCTGAGGTTAGCTGGCATATAGTCGTTTTGCATTAGATTCCCATTT
TCGCACTAAGACTTCTT

Coding sequence (CDS) from alignment at scaffold_428:67626..69442

>TCONS_00065060 ID=TCONS_00065060|Name=TCONS_00065060|organism=Clytia hemisphaerica|type=CDS|length=1389bp|location=Sequence derived from alignment at scaffold_428:67626..69442 (Clytia hemisphaerica)
TTAACAAGCCGACGTTTCTGTCATATTCCGGGTCCGTTGCAAAAGTCGGC
TTTTACCGAAAGTTGACGACGGCTTAAACCGGAGACGTATTGTTTCACGC
AACGTCGTTAGCGCGCTACTAACATTCCTTGTCAATTTATTGTCATCAGC
CGACGAACATTTAAACAATCTAAccaatgattttttcatttcgTCATTCA
AAGTCCCATAGATCAAAGGATTGATTGCTGAATTTAAACTcatcaaaaag
tttgatacaaTAAAAAAGAATGCTGCGTACGGTTTCAAAGCTAACGTTCC
GTACGTTGCTGCAAAGAAAACGGCGTGTTGTGGTGTGACACATACTGTAT
ATGCAATGACCAATATAATggacattttcaataatttattCTGCTGTTTC
TTACGTGAACCGTTACTACTACGACGTCTTTTACGACGTGTTACGGATAA
CCGACGTCCGTTATTTCGATTCGGTAAACGGGTCTTGTTATTAAATCTAC
TCGAGAATACTGACTCGTCCATATCCACAGCTTGGTTACCATCTTTGTTA
TTGTTTGTATCATTATGGCAACAAGCTCCATTTCTCAATTTTCTCTCTTC
CTGTTTCTGTAGATCGTTATGTAGTTTAACAAGTTCAAATTGCGAATGTG
AGCTTTTAACAGCATACACAATAATACAATAAGCAGCGACTATATACAAC
ATTGGTAAAGGCAGCTGGACAACGAATATAATAACCCAGTAGATATTCCC
CATTTCACGACTGGGCCAGTGTTCAGTGCAATAGCCCTGGTGTATATCTG
CAACGATCATTAACGGTATCGTAATAAGACCTGATATCAACCATACTACG
AATATCAAGATTTTAGTTCGCTTTGTGTTACGCTGGTGAGCTACCATCGG
TTGCGTGACAGCTACGTAACGGTCATACGTGATTACGATTAACGTACCAA
TAGACGCATTCACGGTACACGAATTGACGCCGAAACTCACGCCGCATGCT
ATAACGCCAAGGTCCCATAAATAGTTGACTTGGATTTGATACATTTGTGT
GGGTACGTATATTATGCAGACTATAAGATCTGATACAGCTAGATTTAACG
TTAATAAATGTATACTACGTACACGTTGTTTACGGCGTATAAGCACTAAA
CAAACAAGAAAGTTACCGATGCCACCGACACAAGATAGTAAGATATACAA
TGCAAATATCAGTTTATGGAACCATAATGGGATAATAGGCGGTGGCATAT
TTTGTTGCATATGATGTAATGAATTGTTATGATGCAATGAATCGTTGTGA
TAGCCATTCGTATGATGGCCAGTATGATTCGTACCGTTAAAGTGGTGTGT
GTAATGTAGAGTATGGTTGATGAAGTGGGATGATGTCat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040789XLOC_040789Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065060-proteinTCONS_00065060-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065060-exon-scaffold_428-1491911889:67626..69442TCONS_00065060-exon-scaffold_428-1491911889:67626..69442Clytia hemisphaericaexon
TCONS_00065060-exon-scaffold_428-1510915933:67626..69442TCONS_00065060-exon-scaffold_428-1510915933:67626..69442Clytia hemisphaericaexon
TCONS_00065060-exon-scaffold_428-1575043694:67626..69442TCONS_00065060-exon-scaffold_428-1575043694:67626..69442Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_428supercontigscaffold_428:67626..69442 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0430303	0.0249812	0.0244402	1.01162	1.17558	4.11304	3.29291	0.836653	1.2436	0.670592	1.19022	2.69994	2.65153	0.325735	0.672237	1.01033	0.441385	6.96576	6.62652	0.831949	1.31103	0.910703	0.965955	1.06598	0.887934	0.48405	0.032287	0.122443	0.0748498
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065060 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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