TCONS_00065067 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065067
Unique NameTCONS_00065067
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length651

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065067 ID=TCONS_00065067|Name=TCONS_00065067|organism=Clytia hemisphaerica|type=transcript|length=651bp
AGGAGAGTTATGGGTGCAATTCAAACAGTAATTTCAAAATTAGAGacact
ttaaaaatagaattttcgCTTCCCTGATTATTTCCCAAAGAGGACACTTC
TTAAACTTTCTTTGTCCAATAGAAGCCTGCATCATTGAAAATACCACATA
TACCGTGGGCCGATATATTCTATCTCTATCTTCCTAAATCGAATACATAT
ATGCATATGATCTTGTTTTAAAGACACCATTCGAAGTTTCAACTACCATT
TTCTTACACatcattgggccattccattttatatccattagGCTGGACGA
ATATTTCGAATATTTTTCCAGGGAGTTCTTTTTTATCTATAATTGCTATT
CATAGTGGGTGAAATGATATCTGCACAATTTCAAGCTCTCGTACGGTTTG
AAAAAGTTTATCCATAAATTGAATAGcccattaaaaaaaaagaaaaactt
ttgccTTTTACCGCACCGGGTGAagacaaatttttggaaattcttttgtt
aaggggccatccacatagtacgtacgcacaaAAGGGGAATGGGGTCTTCC
CAAAGCGTAAGCTTGCGTGCAAGGGGAGGGGAGGGattttttcatagccc
ttttttaaataaacattgagtttcatgtatgaaataaacgtccgaaccaa
a
Run BLAST on NCBI

transcript from alignment at scaffold_428:370235..370885

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065067 ID=TCONS_00065067|Name=TCONS_00065067|organism=Clytia hemisphaerica|type=transcript|length=651bp|location=Sequence derived from alignment at scaffold_428:370235..370885 (Clytia hemisphaerica)
tttggttcggacgtttatttcatacatgaaactcaatgtttatttaaaaa
agggctatgaaaaaatCCCTCCCCTCCCCTTGCACGCAAGCTTACGCTTT
GGGAAGACCCCATTCCCCTTttgtgcgtacgtactatgtggatggcccct
taacaaaagaatttccaaaaatttgtctTCACCCGGTGCGGTAAAAggca
aaagtttttctttttttttaatgggCTATTCAATTTATGGATAAACTTTT
TCAAACCGTACGAGAGCTTGAAATTGTGCAGATATCATTTCACCCACTAT
GAATAGCAATTATAGATAAAAAAGAACTCCCTGGAAAAATATTCGAAATA
TTCGTCCAGCctaatggatataaaatggaatggcccaatgatGTGTAAGA
AAATGGTAGTTGAAACTTCGAATGGTGTCTTTAAAACAAGATCATATGCA
TATATGTATTCGATTTAGGAAGATAGAGATAGAATATATCGGCCCACGGT
ATATGTGGTATTTTCAATGATGCAGGCTTCTATTGGACAAAGAAAGTTTA
AGAAGTGTCCTCTTTGGGAAATAATCAGGGAAGcgaaaattctattttta
aagtgtCTCTAATTTTGAAATTACTGTTTGAATTGCACCCATAACTCTCC
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040796XLOC_040796Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065067-exon-scaffold_428-1491911889:370235..370885TCONS_00065067-exon-scaffold_428-1491911889:370235..370885Clytia hemisphaericaexon
TCONS_00065067-exon-scaffold_428-1510915933:370235..370885TCONS_00065067-exon-scaffold_428-1510915933:370235..370885Clytia hemisphaericaexon
TCONS_00065067-exon-scaffold_428-1575043694:370235..370885TCONS_00065067-exon-scaffold_428-1575043694:370235..370885Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_428supercontigscaffold_428:370235..370885 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.156545	0.454409	0.266741	0.432975	0.256607	0	0.28983	0	0	0.0813206	0	0	0	0.0455779	0	2.77176	1.72928	0	0	0.698455	0.681364	0.276096	0.502022	0.172357	0	0.220122	0.23492	0.0890894	0.090768
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065067 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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