TCONS_00065096 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065096
Unique NameTCONS_00065096
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length523

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065096 ID=TCONS_00065096|Name=TCONS_00065096|organism=Clytia hemisphaerica|type=transcript|length=523bp
GTTTACGGCATTACCATCTTTCAGCAAGGCTAAACGGGCCTTGCGTCTTT
CCTCGCACGCTTTTTCAACTTCTTGTGGGAGACCATCAACTTTTCTGTGC
TTAACCCGTCCGATCAGTTCTTCAGTTGCTTCATTGGTGACTTGCTTGAA
CTCATTATAGACGGTGTCAATATCGTTTGTTTCAACAAGCTGAAGTAAGG
GTTCGAAGTATCCGCCGATTCTTTGTTGGAAAGCATGGAGCACGTCAGGG
TCTTTCAATTTCTCGacattgaagcgtttgggtagtGAGCGTgacttctt
gaatttttttcattgatttattctagattggaaatcaaaattttgcatat
ttttttaaaaataagatttaGAATTCacgattttctttgtttcttcgCTG
AAAAAGCCCAGCATCTCACTGATTTTCTTCTTTCagtaagaataattttt
ttagaaCAATAAGGTCCCCAATGAGGCgatcaaaaataagaacatttgtt
AGTCAATTTTGTTCTCTTGCCTT
Run BLAST on NCBI

transcript from alignment at scaffold_43:33406..33928

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065096 ID=TCONS_00065096|Name=TCONS_00065096|organism=Clytia hemisphaerica|type=transcript|length=523bp|location=Sequence derived from alignment at scaffold_43:33406..33928 (Clytia hemisphaerica)
AAGGCAAGAGAACAAAATTGACTaacaaatgttcttatttttgatcGCCT
CATTGGGGACCTTATTGttctaaaaaaattattcttactGAAAGAAGAAA
ATCAGTGAGATGCTGGGCTTTTTCAGcgaagaaacaaagaaaatcgtGAA
TTCtaaatcttatttttaaaaaaatatgcaaaattttgatttccaatcta
gaataaatcaatgaaaaaaattcaagaagtcACGCTCactacccaaacgc
ttcaatgtCGAGAAATTGAAAGACCCTGACGTGCTCCATGCTTTCCAACA
AAGAATCGGCGGATACTTCGAACCCTTACTTCAGCTTGTTGAAACAAACG
ATATTGACACCGTCTATAATGAGTTCAAGCAAGTCACCAATGAAGCAACT
GAAGAACTGATCGGACGGGTTAAGCACAGAAAAGTTGATGGTCTCCCACA
AGAAGTTGAAAAAGCGTGCGAGGAAAGACGCAAGGCCCGTTTAGCCTTGC
TGAAAGATGGTAATGCCGTAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040816XLOC_040816Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065096-exon-scaffold_43-1491911889:33406..33928TCONS_00065096-exon-scaffold_43-1491911889:33406..33928Clytia hemisphaericaexon
TCONS_00065096-exon-scaffold_43-1510915933:33406..33928TCONS_00065096-exon-scaffold_43-1510915933:33406..33928Clytia hemisphaericaexon
TCONS_00065096-exon-scaffold_43-1575043694:33406..33928TCONS_00065096-exon-scaffold_43-1575043694:33406..33928Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_43supercontigscaffold_43:33406..33928 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.790905	0.330539	0.511716	0.125159	1.52369	1.20404	0.72631	1.33029	0.476058	1.01067	0.228941	0.90298	1.32236	0.887124	0.513259	0.660343	0.848185	0.521617	0.240214	0.879784	0.65545	1.21234	0.388644	0.117778	3.20085	2.81489	0.464781	0.661368	0	0.383307
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065096 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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