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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065108 ID=TCONS_00065108|Name=TCONS_00065108|organism=Clytia hemisphaerica|type=transcript|length=1775bp
aggCAACTGAAATGAAAAAGTATGTCATCAAGGGATCATGGTAAGCTTCc
cttaaaagaaaagaacttgCTCGAGCTGAAGAAATGTAGGCGAAAGAAAA
AACAGGAGTTCATATTAGGAGTTATTGTTTTGCTAGTGGTTGATTTCATT
TGGGTTGGATCTGCAGAACTAAGTGACTATatattcaaagaaaacaaata
tGACAAACCTTACTTTACTACATACTTTAAAACTGTTTTCTTCTCTGTTT
ATTTGATTGGCTTTTGTTTTGTCAGAAACTGGCAGTACCAGATCAAACAA
TCTTGTACCAGAGGCCTtccaacaaagaaaatgttgaaaGAAGTTTCAAG
AGTTTCACAAGGACCTCAAAATGAGCATCTAAGGCAGCAAGCCATCTCAT
GTGAAACATCAGCCACCTCTACACCTGGATATATTACaccaccaaaattt
gaaaacatgaCAGATGATGAAATTAGTTTAAATGGTGatagtcaaaacaa
aaaagtgaaGTTCAATGATGTTCGAGAAGTACGTTCGCTTGCGAAACGTC
ATGCAGAAGCACAGATTTTGTCAAGAATGTCCCATAACTCTGTTGAAGAG
TTGAGAGGCATCTTACTTTCACTTGATCAGAAGCTTCCATTAAAAGAAAC
TATCAAACTTTCAGTGTATTTTGTTGTGTTGTGGGTTTTCGCTACCTTGG
GTTATCAGGCAGCTCTTGCCAATACAACACCATCAGTCGCTAATATCCTG
TCAGCCACATCTGGAATTTTCACTCTGTGTTTTGCTGCTTGTTTTCCCTC
TTCAAGTGCGGACtggttcaatttttcaaaactgttGTCAGTACTTGTTA
GTTTTGGTGGAGTTTTTATTGTTTGCTGGACGGACCCTGCAAAGAAAGAT
TCCACAGTTAATATTGGTGACTTATATGCCATTGGAGGTGCAATACTATA
CGCTACTTATCTTGTCTTGATTAGAAGAAAAGTTGGCGAGGATCGTAAAT
TAGACATGCCATTATTCTTTGGCTTTGTTGGACTATTTGGTGCCTTGTTT
TTTTGGCCAGGCTTTTTCATTTTACATTACACTAATGTCGAGAGGTTTGA
ACTCCCACCAGATCTGAAAACTTGGCTTTTACTGATTCTAAATGCAGCAA
TTGGAACCCTTCTGTCAGAAATTTTATGGTTGTGGGGTTGCTTTTTAACA
AGCTCTTTGTTAGCTACTTTATCGCTTGGTTTGGTTGCACCACTGTCAAT
GGCGTTTGATATCATTGTACACAAGGTGCAATTTTCATACCTATTTTTTC
TGGGAGTTGCACCAATCCTTATTTCCTTTGTTGTTGTAAGCCTTTTGACT
CATTACGAGGGCTATGATCCTGTCATGAATTGTTTTTCAAAGATATTTGG
TAATACCAAACAGGAGCCCAACCCTGACGAAAGGGAATCTTTACTTGAAA
ATGATGCAGTTGCCTGATTTTGGCAAAATACAATTCACAGAAGCTGTTCT
TTATCTATAATCCCACATCGAAGAGTATATTGAACcttacaaaaattgaa
aataggaAATCAAATTGTAAATAAATTAATATCAATTAATGCATTTTGTA
TTCAGATAATTCCAACAAAACAGGTAATATATTGTTCTGTTtggaaaaat
taatagaaattctataaatatttttttgataataattCTTTAAactttaa
gtttttctttttgttatttttgtatttggttaatttaatttttttttggg
atGCAATTGACTATCTTAATGGAgg Run BLAST on NCBI transcript from alignment at scaffold_430:65024..67581- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065108 ID=TCONS_00065108|Name=TCONS_00065108|organism=Clytia hemisphaerica|type=transcript|length=2558bp|location=Sequence derived from alignment at scaffold_430:65024..67581- (Clytia hemisphaerica)
AGGCAACTGAAATGAAAAAGTATGTCATCAAGGGATCATGGTAAGCTTCC
CTTAAAAGAAAAGAACTTGCTCGAGCTGAAGAAATGTAGGCGAAAGAAAA
AACAGGAGTTCATATTAGGAGTTATTGTTTTGCTAGTGGTTGATTTCATT
TGGGTTGGATCTGCAGAACTAAGTGACTATATATTCAAAGAAAACAAATA
TGACAAACCTTACTTTACTACATACTTTAAAACTGTTTTCTTCTCTGTTT
ATTTGATTGGCTTTTGTTTTGTCAGAAACTGGCAGTACCAGATCAAACAA
TCTTGTACCAGAGGCCTTCCAACAAAGAAAATGTTGAAAGAAGTTTCAAG
AGTTTCACAAGGACCTCAAAATGAGCATCTAAGGCAGCAAGCCATCTCAT
GTGAAACATCAGCCACCTCTACACCTGGATATATTACACCACCAAAATTT
GAAAACATGACAGATGATGAAATTAGTTTAAATGGTGATAGTCAAAACAA
AAAAGTGAAGTTCAATGATGTACGAGAAGTACGTTCGCTTGCGAAACGTC
ATGCAGAAGCACAGATTTTGTCAAGAATGTCCCATAACTCTGTTGAAGAG
TTGAGAAGCATCTTACTTTCACTTGATCAGAAGCTTCCATTGAAAGAAAC
TATCAAACTTTCAGTGTATTTTGTTGTGTTGTGGGTTTTCGCTACCTTGG
GTTATCAGGCAGCTCTTGCCAATACAACACCATCAGTCGCTAATATCCTG
TCAGCCACATCTGGAATTTTCACTCTGTGTTTTGCTGCTTGTTTTCCCTC
TTCAAGTGCGGACTNGGATCATGGTAAGCTTCCCTTAAAAGAAAAGAACT
TGCTCGAGCTGAAGAAATGTAGGCGAAAGAAAAAACAGGAGTTCATATTA
GGAGTTATTGTTTTGCTAGTGGTTGATTTCATTTGGGTTGGATCTGCAGA
ACTAAGTGACTATATATTCAAAGAAAACAAATATGACAAACCTTACTTTA
CTACATACTTTAAAACTGTTTTCTTCTCTGTTTATTTGATTGGCTTTTGT
TTTGTCAGAAACTGGCAGTACCAGATCAAACAATCTTGTACCAGAGGCCT
TCCAACAAAGAAAATGTTGAAAGAAGTTTCAAGAGTTTCACAAGGACCTC
AAAATGAGCATCTAAGGCAGCAAGCCATCTCATGTGAAACATCAGCCACC
TCTACACCTGGATATATTACACCACCAAAATTTGAAAACATGACAGATGA
TGAAATTAGTTTAAATGGTGATAGTCAAAACAAAAAAGTGAAGTTCAATG
ATGTTCGAGAAGTACGTTCGCTTGCGAAACGTCATGCAGAAGCACAGATT
TTGTCAAGAATGTCCCATAACTCTGTTGAAGAGTTGAGAGGCATCTTACT
TTCACTTGATCAGAAGCTTCCATTAAAAGAAACTATCAAACTTTCAGTGT
ATTTTGTTGTGTTGTGGGTTTTCGCTACCTTGGGTTATCAGGCAGCTCTT
GCCAATACAACACCATCAGTCGCTAATATCCTGTCAGCCACATCTGGAAT
TTTCACTCTGTGTTTTGCTGCTTGTTTTCCCTCTTCAAGTGCGGACTGGT
TCAATTTTTCAAAACTGTTGTCAGTACTTGTTAGTTTTGGTGGAGTTTTT
ATTGTTTGCTGGACGGACCCTGCAAAGAAAGATTCCACAGTTAATATTGG
TGACTTATATGCCATTGGAGGTGCAATACTATACGCTACTTATCTTGTCT
TGATTAGAAGAAAAGTTGGCGAGGATCGTAAATTAGACATGCCATTATTC
TTTGGCTTTGTTGGACTATTTGGTGCCTTGTTTTTTTGGCCAGGCTTTTT
CATTTTACATTACACTAATGTCGAGAGGTTTGAACTCCCACCAGATCTGA
AAACTTGGCTTTTACTGATTCTAAATGCAGCAATTGGAACCCTTCTGTCA
GAAATTTTATGGTTGTGGGGTTGCTTTTTAACAAGCTCTTTGTTAGCTAC
TTTATCGCTTGGTTTGGTTGCACCACTGTCAATGGCGTTTGATATCATTG
TACACAAGGTGCAATTTTCATACCTATTTTTTCTGGGAGTTGCACCAATC
CTTATTTCCTTTGTTGTTGTAAGCCTTTTGACTCATTACGAGGGCTATGA
TCCTGTCATGAATTGTTTTTCAAAGATATTTGGTAATACCAAACAGGAGC
CCAACCCTGACGAAAGGGAATCTTTACTTGAAAATGATGCAGTTGCCTGA
TTTTGGCAAAATACAATTCACAGAAGCTGTTCTTTATCTATAATCCCACA
TCGAAGAGTATATTGAACCTTACAAAAATTGAAAATAGGAAATCAAATTG
TAAATAAATTAATATCAATTAATGCATTTTGTATTCAGATAATTCCAACA
AAACAGGTAATATATTGTTCTGTTTGGAAAAATTAATAGAAATTCTATAA
ATATTTTTTTGATAATAATTCTTTAAACTTTAAGTTTTTCTTTTTGTTAT
TTTTGTATTTGGTTAATTTAATTTTTTTTTGGGATGCAATTGACTATCTT
AATGGAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065108-exon-scaffold_430-1575043694:67269..67581 | TCONS_00065108-exon-scaffold_430-1575043694:67269..67581 | Clytia hemisphaerica | exon |
| TCONS_00065108-exon-scaffold_430-1575043694:65024..66485 | TCONS_00065108-exon-scaffold_430-1575043694:65024..66485 | Clytia hemisphaerica | exon |
| TCONS_00065108-exon-scaffold_430-1510915933:67269..67581 | TCONS_00065108-exon-scaffold_430-1510915933:67269..67581 | Clytia hemisphaerica | exon |
| TCONS_00065108-exon-scaffold_430-1510915933:65024..66485 | TCONS_00065108-exon-scaffold_430-1510915933:65024..66485 | Clytia hemisphaerica | exon |
| TCONS_00065108-exon-scaffold_430-1491911889:67269..67581 | TCONS_00065108-exon-scaffold_430-1491911889:67269..67581 | Clytia hemisphaerica | exon |
| TCONS_00065108-exon-scaffold_430-1491911889:65024..66485 | TCONS_00065108-exon-scaffold_430-1491911889:65024..66485 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_430 | supercontig | scaffold_430:65024..67581 - |
Blast
BLAST of TCONS_00065108 vs. Swiss-Prot (Human)
Match: S35F5 (Solute carrier family 35 member F5 OS=Homo sapiens GN=SLC35F5 PE=1 SV=1) HSP 1 Score: 302.368 bits (773), Expect = 2.495e-94 Identity = 197/466 (42.27%), Postives = 285/466 (61.16%), Query Frame = 1
Query: 103 QEFILGVIVLLVVDFIWVGSAELSDYIFKENKYDKPYFTTYFKTVFFSVYLIGFCFVRNWQYQIKQSCTRGLPTKKMLKEVSRVSQGPQNEHLRQQAISCETSATSTPGYITPPKFENMTDDEI-SLNGDSQN----KKVKFNDVREVRSLAKRHAEAQILSRMSHNSVEELRGILLSLDQKLPLKETIKLSVYFVVLWVFATLGYQAALANTTPSVANILSATSGIFTLCFAACFPSSSADWFNFSKLLSVLVSFGGVFIVCWTDPAKKDSTVNIGDLYAIGGAILYATYLVLIRRKVGEDRKLDMPXXXXXXXXXXXXXXWPGFFILHYTNVERFELPPDLKTWLLLILNAAIGTLLSEILWLWGCFXXXXXXXXXXXXXXXXXSMAFDIIVHKVQFSYLFFLGVAPILISFVVVSLLTHYEGYDPVMNCFSKIFG------NTKQEPNPDER-ESLLENDAVA 1464
+ LG+++LL+VD IWV S+EL+ Y+F +Y+KP+F+T+ KT F +YL+GF + W +Q CTRGL K + + + S+ S P Y+ P KF ++ ++ S N D++ +V+F+++ E+R L HA LSRMS+ V+E IL ++ KL + K+S +F +W A L YQ AL++T ++ NILS+TSG+FTL AA FPS+S D F SKLL+V++S GGV +V K +G ++++ GA+LYA Y+V+I+RKV + KLD+P+FFGFVGLF L WPGFF+LHYT E FE P + + +I+N IGT+LSE LWLWGCFLTSSL+ TL+L L PLS+ D+ + KVQFS+LFF G P+ SF +V+LL HY +DPVM +IF ++ P E+ ESL+ +V+
Sbjct: 67 RRMALGIVILLLVDVIWVASSELTSYVF--TQYNKPFFSTFAKTSMFVLYLLGFIIWKPW----RQQCTRGLRGKH-----AAFFADAEGYFAACTTDTTMNSSLSEPLYV-PVKFHDLPSEKPESTNIDTEKTPKKSRVRFSNIMEIRQLPSSHALEAKLSRMSY-PVKEQESILKTVG-KLTATQVAKISFFFCFVWFLANLSYQEALSDTQVAIVNILSSTSGLFTLILAAVFPSNSGDRFTLSKLLAVILSIGGVVLVNLAGSEKPAGRDTVGSIWSLAGAMLYAVYIVMIKRKVDREDKLDIPMFFGFVGLFNLLLLWPGFFLLHYTGFEDFEFPNKV-VLMCIIINGLIGTVLSEFLWLWGCFLTSSLIGTLALSLTIPLSIIADMCMQKVQFSWLFFAGAIPVFFSFFIVTLLCHYNNWDPVMVGIRRIFAFICRKHRIQRVPEDSEQCESLISMHSVS 517
The following BLAST results are available for this feature:
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