TCONS_00065136 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065136
Unique NameTCONS_00065136
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length433

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065136 ID=TCONS_00065136|Name=TCONS_00065136|organism=Clytia hemisphaerica|type=transcript|length=433bp
CAACTTACAGCAGCAGTTTCTCTCATGTCTCCCAACCCAGAACTTTTGAA
ActgaaagtaaaatatttaaCATTGGGTATTGGTGCTACTAAATTTGCAG
CTCCCTATCAGGGTCCACTACCTTCAATTTCATATCTAGATTATGATCAT
TGTCTTAGGCTATTCTTGAAGTGTTTGAAATATCAAACTTTAGACCTAGA
TTTGTTCCCTTCCAGTTCATCATCCTACAGGGCTTCTATTGACCATTTGA
AAGAGTTAAAAGAATTTTGTGATGAATCAGGCTACAAGTTAGGCTTTTCA
AATAATGATTTGCTGTTTTCCGTATACTTTGATCAAAATGTTGATGCTGC
ATTAAAGATCTTCAAAGAATCAGTTGCTGATCAACTGGAAATAAACATAG
TTGGTTCTAAGGGCACTGTGTTGTATATAAGAG
Run BLAST on NCBI

protein sequence of TCONS_00065136-protein

>TCONS_00065136-protein ID=TCONS_00065136-protein|Name=TCONS_00065136-protein|organism=Clytia hemisphaerica|type=polypeptide|length=144bp
QLTAAVSLMSPNPELLKLKVKYLTLGIGATKFAAPYQGPLPSISYLDYDH
CLRLFLKCLKYQTLDLDLFPSSSSSYRASIDHLKELKEFCDESGYKLGFS
NNDLLFSVYFDQNVDAALKIFKESVADQLEINIVGSKGTVLYIR
Run BLAST on NCBI

transcript from alignment at scaffold_431:9808..10240

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065136 ID=TCONS_00065136|Name=TCONS_00065136|organism=Clytia hemisphaerica|type=transcript|length=433bp|location=Sequence derived from alignment at scaffold_431:9808..10240 (Clytia hemisphaerica)
CTCTTATATACAACACAGTGCCCTTAGAACCAACTATGTTTATTTCCAGT
TGATCAGCAACTGATTCTTTGAAGATCTTTAATGCAGCATCAACATTTTG
ATCAAAGTATACGGAAAACAGCAAATCATTATTTGAAAAGCCTAACTTGT
AGCCTGATTCATCACAAAATTCTTTTAACTCTTTCAAATGGTCAATAGAA
GCCCTGTAGGATGATGAACTGGAAGGGAACAAATCTAGGTCTAAAGTTTG
ATATTTCAAACACTTCAAGAATAGCCTAAGACAATGATCATAATCTAGAT
ATGAAATTGAAGGTAGTGGACCCTGATAGGGAGCTGCAAATTTAGTAGCA
CCAATACCCAATGttaaatattttactttcagTTTCAAAAGTTCTGGGTT
GGGAGACATGAGAGAAACTGCTGCTGTAAGTTG

Coding sequence (CDS) from alignment at scaffold_431:9808..10240

>TCONS_00065136 ID=TCONS_00065136|Name=TCONS_00065136|organism=Clytia hemisphaerica|type=CDS|length=432bp|location=Sequence derived from alignment at scaffold_431:9808..10240 (Clytia hemisphaerica)
TCTTATATACAACACAGTGCCCTTAGAACCAACTATGTTTATTTCCAGTT
GATCAGCAACTGATTCTTTGAAGATCTTTAATGCAGCATCAACATTTTGA
TCAAAGTATACGGAAAACAGCAAATCATTATTTGAAAAGCCTAACTTGTA
GCCTGATTCATCACAAAATTCTTTTAACTCTTTCAAATGGTCAATAGAAG
CCCTGTAGGATGATGAACTGGAAGGGAACAAATCTAGGTCTAAAGTTTGA
TATTTCAAACACTTCAAGAATAGCCTAAGACAATGATCATAATCTAGATA
TGAAATTGAAGGTAGTGGACCCTGATAGGGAGCTGCAAATTTAGTAGCAC
CAATACCCAATGttaaatattttactttcagTTTCAAAAGTTCTGGGTTG
GGAGACATGAGAGAAACTGCTGCTGTAAGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040841XLOC_040841Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065136-exon-scaffold_431-1491911889:9808..10240TCONS_00065136-exon-scaffold_431-1491911889:9808..10240Clytia hemisphaericaexon
TCONS_00065136-exon-scaffold_431-1510915933:9808..10240TCONS_00065136-exon-scaffold_431-1510915933:9808..10240Clytia hemisphaericaexon
TCONS_00065136-exon-scaffold_431-1575043694:9808..10240TCONS_00065136-exon-scaffold_431-1575043694:9808..10240Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065136-proteinTCONS_00065136-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_431supercontigscaffold_431:9808..10240 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.375162	0.10644	0.478205	0	0	1.5029	0.300902	0.40672	0	0.222849	0.261231	0	0.366582	0.365802	0	0.778292	0	0	0.317241	0	0	0.361213	0	0.97463	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065136 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top