|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065206 ID=TCONS_00065206|Name=TCONS_00065206|organism=Clytia hemisphaerica|type=transcript|length=3342bpRun BLAST on NCBI protein sequence of TCONS_00065206-protein >TCONS_00065206-protein ID=TCONS_00065206-protein|Name=TCONS_00065206-protein|organism=Clytia hemisphaerica|type=polypeptide|length=941bp MLHACKNSNILQNQKLYGCLRKNARYASVKVTDSKVLGIRREDLNVWERRRun BLAST on NCBI transcript from alignment at scaffold_433:315457..345324- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00065206 ID=TCONS_00065206|Name=TCONS_00065206|organism=Clytia hemisphaerica|type=transcript|length=29868bp|location=Sequence derived from alignment at scaffold_433:315457..345324- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_433:315457..345324- >TCONS_00065206 ID=TCONS_00065206|Name=TCONS_00065206|organism=Clytia hemisphaerica|type=CDS|length=67824bp|location=Sequence derived from alignment at scaffold_433:315457..345324- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00065206 vs. Swiss-Prot (Human)
Match: AASS (Alpha-aminoadipic semialdehyde synthase, mitochondrial OS=Homo sapiens GN=AASS PE=1 SV=1) HSP 1 Score: 878.241 bits (2268), Expect = 0.000e+0 Identity = 451/907 (49.72%), Postives = 618/907 (68.14%), Query Frame = 3
Query: 126 VLGIRREDLNVWERRAPIAPQHVKELTDKGITVLVQPSTRRAYTMDEYESAGAVISEDLSAASLIMAVKTVPIDILIPNKSYSFFSHTIKAQEGNMPTLDALLEKNIRLIDYEKMEDAKGKRXXXXXXXXXXXXMINILHGIGLRLLSLGHHTPFMYVGSTHNYKNSRQARLSIYELGEDIRAGKLPHHFGPLTFVFTGSGNVSQGAQEVFRELPHVWVHPHELEEAIKTYDHRTLVATKVSRKHYLVPKGGNGEFNAEEFDQHPERFRSIFAEKIAPFANVIVNGIYWGPKNPRLLTNADMTSLMKRTSHQDK-YGGCPELPHRLLALCDITADLGGSLEFMNECTTIEYPFALYDHMRGKDEIGVEGDGLLYCSIDNIPAQLPREATDYFGKLLLPWIPEMVAGDATRPLGEETCYTDVIKGAIITSNHKLTPGYEYISKLRKRNEAAKMASQEESSNVAIKQRVLVLGAGLVSGPLVEYLTRDKSLKLTTVSSVHDEGLELAKKYDIEPITMDVAKSQDRLQKLVSENDLVISLLPYTMHPMVANMCIENKKNMLTASYVTPEMKELGEKAEAAGITIFQEIGLDPGIDHLLAMNCFDSVAESGGKVVGYKSYCGGLPAPEDAANPLRYKFSWSPRGALLTALNGARYLKDGEIVEIQPG-SLMENTSAFEAYPGFNLEGYPNRDSTNYAEKYGLKDVKTMIRGTLRYKDFSDAMLAIHRLGFLDMSQKQGFE-EGNSTTWGTLMNQLLGTN-NLEGDNLEXXXXXXXXXXSVALKAIKELGLLSNDIEVITKGSPLDTLSAYLASTLVYAPGERDLVLLNNQIEIEW-ADKKEIREISLVAYGDPKGYSAMARTVSVPAAIAAKMILDGEISTKGTVVPLRREFYDPILKRLETEGISYTSKS 2831
VL +RRED+N WERRAP+AP+H+K +T+ G VL+QPS RRA +Y AG ++ ED+S A LI+ VK P + L+ K+Y+FFSHTIKAQE NM LD +L++ IRLIDYEKM D +G RV AFG++AGV GMINILHG+GLRLL+LGHHTPFM++G HNY+NS QA ++ + G +I G +P GPLTFVFTG+GNVS+GAQ +F ELP +V PHEL+E +T D R + T +SR H+LV K + ++ E+D+HPER+ S F IAP+ ++NGIYW PRLLT D SL+ GCP LPH+L+A+CDI+AD GGS+EFM ECTTIE+PF +YD + VEG G+L CSIDN+PAQLP EAT+ FG +L P++ EM+ DAT+PL E ++ V++ A+ITSN L Y+YI LR+ E A +S ++ +++VLVLG+G +S P++EYL+RD ++++T S + ++ +L KKY+I P++MD+ K +++L LV++ DLVISLLPY +HP+VA CI NK NM+TASY+TP +KEL + E AGITI E+GLDPG+DH+LAM D E G + Y SYCGGLPAPE + NPLRYKFSWSP G L+ + A YL DG++V + G S ++ ++ + +PG NLEGYPNRDST YAE YG+ T++RGTLRYK + A+ +LG ++ F E N TW L+ L+G + + E D L+ V + ++ L+A + LGLL ++ +V S LD LS +L L Y P E+D++++ + I + E + I LVAYGD G+SAMA+TV +P A+AAKM+LDGEI KG + P +E Y PIL+R++ EGI YT++S
Sbjct: 25 VLAVRREDVNAWERRAPLAPKHIKGITNLGYKVLIQPSNRRAIHDKDYVKAGGILQEDISEACLILGVKRPPEEKLMSRKTYAFFSHTIKAQEANMGLLDEILKQEIRLIDYEKMVDHRGVRVVAFGQWAGVAGMINILHGMGLRLLALGHHTPFMHIGMAHNYRNSSQAVQAVRDAGYEISLGLMPKSIGPLTFVFTGTGNVSKGAQAIFNELPCEYVEPHELKEVSQTGDLRKVYGTVLSRHHHLVRK-TDAVYDPAEYDKHPERYISRFNTDIAPYTTCLINGIYWEQNTPRLLTRQDAQSLLAPGKFSPAGVEGCPALPHKLVAICDISADTGGSIEFMTECTTIEHPFCMYDADQHIIHDSVEGSGILMCSIDNLPAQLPIEATECFGDMLYPYVEEMILSDATQPL-ESQNFSPVVRDAVITSNGTLPDKYKYIQTLRESRERA------QSLSMGTRRKVLVLGSGYISEPVLEYLSRDGNIEITVGSDMKNQIEQLGKKYNINPVSMDICKQEEKLGFLVAKQDLVISLLPYVLHPLVAKACITNKVNMVTASYITPALKELEKSVEDAGITIIGELGLDPGLDHMLAMETIDKAKEVGATIESYISYCGGLPAPEHSNNPLRYKFSWSPVGVLMNVMQSATYLLDGKVVNVAGGISFLDAVTSMDFFPGLNLEGYPNRDSTKYAEIYGISSAHTLLRGTLRYKGYMKALNGFVKLGLINREALPAFRPEANPLTWKQLLCDLVGISPSSEHDVLKEAVLKKLGGDNTQLEAAEWLGLLGDE-QVPQAESILDALSKHLVMKLSYGPEEKDMIVMRDSFGIRHPSGHLEHKTIDLVAYGDINGFSAMAKTVGLPTAMAAKMLLDGEIGAKGLMGPFSKEIYGPILERIKAEGIIYTTQS 922 The following BLAST results are available for this feature:
BLAST of TCONS_00065206 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.