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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065250 ID=TCONS_00065250|Name=TCONS_00065250|organism=Clytia hemisphaerica|type=transcript|length=912bp
GACCCCTCCTGTGCAAAATGGTACCATACCGAATGTCTGGGACTAAAGTT
TAAGACATCGATTGAAGTGCAAAGATACATTTTTCATTGTCCAGAACATG
GAACCGAACAATACAGAACGGAAGTACCGCTAGTTGCACCGACTGCTCTA
TCCAGTGAGCCCGTTAGTTCGATGGAAGAGTTACGCAGTCAATCCGCTAA
TAagcaaaatagaaaacaaaagaggTCCACGCACAACCCAATGTACGTTG
AGTACGAAGGGACAGTTTATCACATTGCCAGATTTCTGTCTTTAACTGTA
GGCAAAATCTATTGTCCAAACGCGAGCAGAATGGAACGCTGGAAGTCTAC
AAACCAAACGTCTTTCTACGAACGGCTGCACAACGATCCTTTGTCCGAAA
CTAGTATAAAAATTGACGACTTATGCTGCTTTTGGCAAAATAAAGAATAC
CACTATGGAAGAGTGGTAAGAATTATGCGGCGTTATGGCACAACGACTGC
TCATCCTATCTTCAAGgcagaaatagaaaatttaaagGTGGTAAGCTTTT
TCGCTCGCTGCTACTCACTTTCAACAGATTCAACACTAACACATACAAAA
GCTATCAAATACCAGTTATTTACGGGGGTCCTTTTGGTTAAACGCTTTGA
TGATAGCCTGTTATCGAAAGACGATTTGGATTTTCTTgagaacaaaaaaa
taatgttgACATCCAGTACAAAAAACAACGAAATGAGCAGTTCAACCGGG
CAAGAACCAGCGGTTGAACCATTCGATATTCAGCTCATGAAGCAAAAATT
GTCAGCGTTGGGCGTTAAATTCCGGAAAAACGCTTCGAAAAAAAGTCTGA
TTACTTTATTACGGGATGCAGAGAAACATTAAGTatgtagtttttttata
aatcaaTCGTTT Run BLAST on NCBI protein sequence of TCONS_00065250-protein >TCONS_00065250-protein ID=TCONS_00065250-protein|Name=TCONS_00065250-protein|organism=Clytia hemisphaerica|type=polypeptide|length=293bp
DPSCAKWYHTECLGLKFKTSIEVQRYIFHCPEHGTEQYRTEVPLVAPTAL
SSEPVSSMEELRSQSANKQNRKQKRSTHNPMYVEYEGTVYHIARFLSLTV
GKIYCPNASRMERWKSTNQTSFYERLHNDPLSETSIKIDDLCCFWQNKEY
HYGRVVRIMRRYGTTTAHPIFKAEIENLKVVSFFARCYSLSTDSTLTHTK
AIKYQLFTGVLLVKRFDDSLLSKDDLDFLENKKIMLTSSTKNNEMSSSTG
QEPAVEPFDIQLMKQKLSALGVKFRKNASKKSLITLLRDAEKH Run BLAST on NCBI transcript from alignment at scaffold_435:5659..6917+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065250 ID=TCONS_00065250|Name=TCONS_00065250|organism=Clytia hemisphaerica|type=transcript|length=1259bp|location=Sequence derived from alignment at scaffold_435:5659..6917+ (Clytia hemisphaerica)
GACCCCTCCTGTGCAAAATGGTACCATACCGAATGTCTGGGACTAAAGTT
TAAGACATCGATTGAAGTGCAAAGATACATTTTTCATTGTCCAGAACATG
GAACCGAACAATACAGGTATTAGAATTATACGTAATGTAATTATATTTAC
CGCGTAACCTCGCAACTTTTAGGTGATTCCTAAGATACTGGTGGATTTCC
ACGAAGACACATCCTCCAAAGAGCAGCATTGATAAACCAATAATtagcaa
aattgtttttacttaaaggaagaaattttcacgagAAAAAATTACGCGGA
ATCCAATTTAGCTTAAATTTCAGTAGTTTTGCCGAATTTGATTTCGCAAT
TGAAAggtttttcgtttacaaaacaAACGGTACTAATttgttccgcgaaa
atttctttctttatggTATTACTCTCCATTTACATTAGATCGCTTAATAC
TGTTAATTTTTAGAACGGAAGTACCGCTAGTTGCACCGACTGCTCTATCC
AGTGAGCCCGTTAGTTCGATGGAAGAGTTACGCAGTCAATCCGCTAATAa
gcaaaatagaaaacaaaagaggTCCACGCACAACCCAATGTACGTTGAGT
ACGAAGGGACAGTTTATCACATTGCCAGATTTCTGTCTTTAACTGTAGGC
AAAATCTATTGTCCAAACGCGAGCAGAATGGAACGCTGGAAGTCTACAAA
CCAAACGTCTTTCTACGAACGGCTGCACAACGATCCTTTGTCCGAAACTA
GTATAAAAATTGACGACTTATGCTGCTTTTGGCAAAATAAAGAATACCAC
TATGGAAGAGTGGTAAGAATTATGCGGCGTTATGGCACAACGACTGCTCA
TCCTATCTTCAAGgcagaaatagaaaatttaaagGTGGTAAGCTTTTTCG
CTCGCTGCTACTCACTTTCAACAGATTCAACACTAACACATACAAAAGCT
ATCAAATACCAGTTATTTACGGGGGTCCTTTTGGTTAAACGCTTTGATGA
TAGCCTGTTATCGAAAGACGATTTGGATTTTCTTgagaacaaaaaaataa
tgttgACATCCAGTACAAAAAACAACGAAATGAGCAGTTCAACCGGGCAA
GAACCAGCGGTTGAACCATTCGATATTCAGCTCATGAAGCAAAAATTGTC
AGCGTTGGGCGTTAAATTCCGGAAAAACGCTTCGAAAAAAAGTCTGATTA
CTTTATTACGGGATGCAGAGAAACATTAAGTatgtagtttttttataaat
caaTCGTTT Coding sequence (CDS) from alignment at scaffold_435:5659..6917+ >TCONS_00065250 ID=TCONS_00065250|Name=TCONS_00065250|organism=Clytia hemisphaerica|type=CDS|length=1764bp|location=Sequence derived from alignment at scaffold_435:5659..6917+ (Clytia hemisphaerica)
GACCCCTCCTGTGCAAAATGGTACCATACCGAATGTCTGGGACTAAAGTT
TAAGACATCGATTGAAGTGCAAAGATACATTTTTCATTGTCCAGAACATG
GAACCGAACAATACAGAACGGAAGTACCGCTAGTTGCACCGACTGCTCTA
TCCAGTGAGCCCGTTAGTTCGATGGAAGAGTTACGCAGTCAATCCGCTAA
TAagcaaaatagaaaacaaaagaggTCCACGCACAACCCAATGTACGTTG
AGTACGAAGGGACAGTTTATCACATTGCCAGATTTCTGTCTTTAACTGTA
GGCAAAATCTATTGTCCAAACGCGAGCAGAATGGAACGCTGGAAGTCTAC
AAACCAAACGTCTTTCTACGAACGGCTGCACAACGATCCTTTGTCCGAAA
CTAGTATAAAAATTGACGACTTATGCTGCTTTTGGCAAAATAAAGAATAC
CACTATGGAAGAGTGGTAAGAATTATGCGGCGTTATGGCACAACGACTGC
TCATCCTATCTTCAAGgcagaaatagaaaatttaaagGTGGTAAGCTTTT
TCGCTCGCTGCTACTCACTTTCAACAGATTCAACACTAACACATACAAAA
GCTATCAAATACCAGTTATTTACGGGGGTCCTTTTGGTTAAACGCTTTGA
TGATAGCCTGTTATCGAAAGACGATTTGGATTTTCTTgagaacaaaaaaa
taatgttgACATCCAGTACAAAAAACAACGAAATGAGCAGTTCAACCGGG
CAAGAACCAGCGGTTGAACCATTCGATATTCAGCTCATGAAGCAAAAATT
GTCAGCGTTGGGCGTTAAATTCCGGAAAAACGCTTCGAAAAAAAGTCTGA
TTACTTTATTACGGGATGCAGAGAAACATTAAGACCCCTCCTGTGCAAAA
TGGTACCATACCGAATGTCTGGGACTAAAGTTTAAGACATCGATTGAAGT
GCAAAGATACATTTTTCATTGTCCAGAACATGGAACCGAACAATACAGAA
CGGAAGTACCGCTAGTTGCACCGACTGCTCTATCCAGTGAGCCCGTTAGT
TCGATGGAAGAGTTACGCAGTCAATCCGCTAATAagcaaaatagaaaaca
aaagaggTCCACGCACAACCCAATGTACGTTGAGTACGAAGGGACAGTTT
ATCACATTGCCAGATTTCTGTCTTTAACTGTAGGCAAAATCTATTGTCCA
AACGCGAGCAGAATGGAACGCTGGAAGTCTACAAACCAAACGTCTTTCTA
CGAACGGCTGCACAACGATCCTTTGTCCGAAACTAGTATAAAAATTGACG
ACTTATGCTGCTTTTGGCAAAATAAAGAATACCACTATGGAAGAGTGGTA
AGAATTATGCGGCGTTATGGCACAACGACTGCTCATCCTATCTTCAAGgc
agaaatagaaaatttaaagGTGGTAAGCTTTTTCGCTCGCTGCTACTCAC
TTTCAACAGATTCAACACTAACACATACAAAAGCTATCAAATACCAGTTA
TTTACGGGGGTCCTTTTGGTTAAACGCTTTGATGATAGCCTGTTATCGAA
AGACGATTTGGATTTTCTTgagaacaaaaaaataatgttgACATCCAGTA
CAAAAAACAACGAAATGAGCAGTTCAACCGGGCAAGAACCAGCGGTTGAA
CCATTCGATATTCAGCTCATGAAGCAAAAATTGTCAGCGTTGGGCGTTAA
ATTCCGGAAAAACGCTTCGAAAAAAAGTCTGATTACTTTATTACGGGATG
CAGAGAAACATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065250-exon-scaffold_435-1491911889:5659..5774 | TCONS_00065250-exon-scaffold_435-1491911889:5659..5774 | Clytia hemisphaerica | exon |
| TCONS_00065250-exon-scaffold_435-1510915933:5659..5774 | TCONS_00065250-exon-scaffold_435-1510915933:5659..5774 | Clytia hemisphaerica | exon |
| TCONS_00065250-exon-scaffold_435-1575043694:5659..5774 | TCONS_00065250-exon-scaffold_435-1575043694:5659..5774 | Clytia hemisphaerica | exon |
| TCONS_00065250-exon-scaffold_435-1491911889:6122..6917 | TCONS_00065250-exon-scaffold_435-1491911889:6122..6917 | Clytia hemisphaerica | exon |
| TCONS_00065250-exon-scaffold_435-1510915933:6122..6917 | TCONS_00065250-exon-scaffold_435-1510915933:6122..6917 | Clytia hemisphaerica | exon |
| TCONS_00065250-exon-scaffold_435-1575043694:6122..6917 | TCONS_00065250-exon-scaffold_435-1575043694:6122..6917 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_435 | supercontig | scaffold_435:5659..6917 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013083 | Znf_RING/FYVE/PHD |
Blast
The following BLAST results are available for this feature:
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