|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065281 ID=TCONS_00065281|Name=TCONS_00065281|organism=Clytia hemisphaerica|type=transcript|length=1422bp
CAAATGGAAGACCTTAAAGCGACCAAACCAGATGAATATGGTGAATTGGT
GAAGAATGGACTATCGATTCAGGCACAGGATCAATACCCATTGGCTANCC
AGATGAATATGGTGAATTGGTGAAGAATGGACTATCGATTCAGGCACAGG
ATCAATACCCATTGGCTACTGCATGCGATCAACGCGGAGAACAAACAATT
AACAGAGATGCCAAAACCGCAGGTGGAGTCAAAGGATACTCGAGCAACCA
TAACAATGTTACAAAATGGTGTTTGAATCGACCAAATCTTGCCTTAATCA
CGAGAGATCTATTAAATATGGCTGGATTGACACACAAGACAGAATACAAA
CCACTTCGaacaaaagaaatcaagaagTCAGAGATCTTGGTGACAAAAGT
AATTGACGTGCTAGAAAATGAATACTGGAGCCCATTCAGCGTCTTTCTCC
AAGATGAAGAAGTCTACAATCTAAGCTCgggaaaaaagtttgaaggaAAT
GTTGAAAAGTTGCTCGACATAAAAAAACAAGGACAACAGTTGATGGATAC
CTTTATGGGTGATAGAATTCAATCAAACAAAACACCGTTCCATGAACCTT
TGACcaaacaaaaaccaaccttgttcaagcaacaacaaattaagaagaag
aaTAAAGACCATGCAAAGGAAGTGATCAAAGTCAATCGGGATATCCTCGG
AAACTTTTGTCCATCTCAACGAAACTGCAGAGCCCAATCGATTTCAAAAC
CATTTTATCCTATCCATTATGTCCAGTTCCACTTAGTTTGGCATTTCCAG
ACGGAACAAAACGAGGCAACAAGAAAAGCCAGCTGATTGAAATCATACTT
CCTTCCGTTATTCCATCTTCTGGTGATCGCACCTGCAACACATTGATAGT
TGATCTAATCGCTCATTACCGAATCACATCAAAGGGAAAGGCAAAAACTT
TCGCACAATTCATCACACGACTTCTTTCATCATTACCGAAAGGCCACCGT
CGAGTTGATCTGGTCGCAGACTGTTATCGCGAATTCAGCATCAAAGCAGG
TGAAAGAGTCAAACGTGGAGCTTCCGATTCAGAAAAAGTCTTAATCAGAT
CTGTCGATACATTGGTACCTAGTGATCTTAACCGTTTCTATTCCAATTCC
GAAAACAAAACGCAACTGATTCAGCTGACATTCGACTTCATCAAAGCAAA
TCCCAAAAAGTGCCTCGACATCCTTAAATGTGACAGCATAGTCATGTCTG
GTGACCAATATTGTGAGAAGGTAACTCGTGACAATGTGTCGAATGTGGAA
AGTCTCGTTTCAGATCAAGAAGAAGCTGATACCAAACTTATTTTACATGC
TTTGGACGCCCTCAACAGTGACGGCAATGTATGCATTCGTTCTTCATCGG
GAGATACCGACGTTTTGGTCAT Run BLAST on NCBI protein sequence of TCONS_00065281-protein >TCONS_00065281-protein ID=TCONS_00065281-protein|Name=TCONS_00065281-protein|organism=Clytia hemisphaerica|type=polypeptide|length=172bp
MAGLTHKTEYKPLRTKEIKKSEILVTKVIDVLENEYWSPFSVFLQDEEVY
NLSSGKKFEGNVEKLLDIKKQGQQLMDTFMGDRIQSNKTPFHEPLTKQKP
TLFKQQQIKKKNKDHAKEVIKVNRDILGNFCPSQRNCRAQSISKPFYPIH
YVQFHLVWHFQTEQNEATRKAS Run BLAST on NCBI transcript from alignment at scaffold_435:232664..234371- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065281 ID=TCONS_00065281|Name=TCONS_00065281|organism=Clytia hemisphaerica|type=transcript|length=1708bp|location=Sequence derived from alignment at scaffold_435:232664..234371- (Clytia hemisphaerica)
CAAATGGAAGACCTTAAAGCGACCAAACCAGATGAATATGGTGAATTGGT
GAAGAATGGACTATCGATTCAGGCACAGGATCAATACCCATTGGCTANCC
AGATGAATATGGTGAATTGGTGAAGAATGGACTATCGATTCAGGCACAGG
ATCAATACCCATTGGCTACTGCATGCGATCAACGCGGAGAACAAACAATT
AACAGAGATGCCAAAACCGCAGGTGATTCATTACTTGGGGTTTTAGGGTC
TTGCTTTTACGAAATAATCATAACATAATCGATGTTATAAGTATAATCTG
TCCACTCTCATCTGAATACCTGGATCTGGTTCATATCTTTTATTTAGCTA
GTTTACAAAGTTGCTAAAGCTGAGCAGTGATAAAATCTTTTTCTTTTGAT
TCGTTTATTTGTTATTTTGGAACTATGAATTCTAATCGGTAATTGTAAAA
AAAACACTATCCAGATGAAAATGAACGGAATTTAAGATGTCGTTTGTTAC
TTTTGCAGGTGGAGTCAAAGGATACTCGAGCAACCATAACAATGTTACAA
AATGGTGTTTGAATCGACCAAATCTTGCCTTAATCACGAGAGATCTATTA
AATATGGCTGGATTGACACACAAGACAGAATACAAACCACTTCGAACAAA
AGAAATCAAGAAGTCAGAGATCTTGGTGACAAAAGTAATTGACGTGCTAG
AAAATGAATACTGGAGCCCATTCAGCGTCTTTCTCCAAGATGAAGAAGTC
TACAATCTAAGCTCGGGAAAAAAGTTTGAAGGAAATGTTGAAAAGTTGCT
CGACATAAAAAAACAAGGACAACAGTTGATGGATACCTTTATGGGTGATA
GAATTCAATCAAACAAAACACCGTTCCATGAACCTTTGACCAAACAAAAA
CCAACCTTGTTCAAGCAACAACAAATTAAGAAGAAGAATAAAGACCATGC
AAAGGAAGTGATCAAAGTCAATCGGGATATCCTCGGAAACTTTTGTCCAT
CTCAACGAAACTGCAGAGCCCAATCGATTTCAAAACCATTTTATCCTATC
CATTATGTCCAGTTCCACTTAGTTTGGCATTTCCAGACGGAACAAAACGA
GGCAACAAGAAAAGCCAGCTGATTGAAATCATACTTCCTTCCGTTATTCC
ATCTTCTGGTGATCGCACCTGCAACACATTGATAGTTGATCTAATCGCTC
ATTACCGAATCACATCAAAGGGAAAGGCAAAAACTTTCGCACAATTCATC
ACACGACTTCTTTCATCATTACCGAAAGGCCACCGTCGAGTTGATCTGGT
CGCAGACTGTTATCGCGAATTCAGCATCAAAGCAGGTGAAAGAGTCAAAC
GTGGAGCTTCCGATTCAGAAAAAGTCTTAATCAGATCTGTCGATACATTG
GTACCTAGTGATCTTAACCGTTTCTATTCCAATTCCGAAAACAAAACGCA
ACTGATTCAGCTGACATTCGACTTCATCAAAGCAAATCCCAAAAAGTGCC
TCGACATCCTTAAATGTGACAGCATAGTCATGTCTGGTGACCAATATTGT
GAGAAGGTAACTCGTGACAATGTGTCGAATGTGGAAAGTCTCGTTTCAGA
TCAAGAAGAAGCTGATACCAAACTTATTTTACATGCTTTGGACGCCCTCA
ACAGTGACGGCAATGTATGCATTCGTTCTTCATCGGGAGATACCGACGTT
TTGGTCAT Coding sequence (CDS) from alignment at scaffold_435:232664..234371- >TCONS_00065281 ID=TCONS_00065281|Name=TCONS_00065281|organism=Clytia hemisphaerica|type=CDS|length=519bp|location=Sequence derived from alignment at scaffold_435:232664..234371- (Clytia hemisphaerica)
ATGGCTGGATTGACACACAAGACAGAATACAAACCACTTCGAACAAAAGA
AATCAAGAAGTCAGAGATCTTGGTGACAAAAGTAATTGACGTGCTAGAAA
ATGAATACTGGAGCCCATTCAGCGTCTTTCTCCAAGATGAAGAAGTCTAC
AATCTAAGCTCGGGAAAAAAGTTTGAAGGAAATGTTGAAAAGTTGCTCGA
CATAAAAAAACAAGGACAACAGTTGATGGATACCTTTATGGGTGATAGAA
TTCAATCAAACAAAACACCGTTCCATGAACCTTTGACCAAACAAAAACCA
ACCTTGTTCAAGCAACAACAAATTAAGAAGAAGAATAAAGACCATGCAAA
GGAAGTGATCAAAGTCAATCGGGATATCCTCGGAAACTTTTGTCCATCTC
AACGAAACTGCAGAGCCCAATCGATTTCAAAACCATTTTATCCTATCCAT
TATGTCCAGTTCCACTTAGTTTGGCATTTCCAGACGGAACAAAACGAGGC
AACAAGAAAAGCCAGCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065281-exon-scaffold_435-1575043694:234150..234371 | TCONS_00065281-exon-scaffold_435-1575043694:234150..234371 | Clytia hemisphaerica | exon |
| TCONS_00065281-exon-scaffold_435-1575043694:232664..233863 | TCONS_00065281-exon-scaffold_435-1575043694:232664..233863 | Clytia hemisphaerica | exon |
| TCONS_00065281-exon-scaffold_435-1510915933:234150..234371 | TCONS_00065281-exon-scaffold_435-1510915933:234150..234371 | Clytia hemisphaerica | exon |
| TCONS_00065281-exon-scaffold_435-1510915933:232664..233863 | TCONS_00065281-exon-scaffold_435-1510915933:232664..233863 | Clytia hemisphaerica | exon |
| TCONS_00065281-exon-scaffold_435-1491911889:234150..234371 | TCONS_00065281-exon-scaffold_435-1491911889:234150..234371 | Clytia hemisphaerica | exon |
| TCONS_00065281-exon-scaffold_435-1491911889:232664..233863 | TCONS_00065281-exon-scaffold_435-1491911889:232664..233863 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_435 | supercontig | scaffold_435:232664..234371 - |
Blast
The following BLAST results are available for this feature:
|
