TCONS_00065478 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065478
Unique NameTCONS_00065478
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length584

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065478 ID=TCONS_00065478|Name=TCONS_00065478|organism=Clytia hemisphaerica|type=transcript|length=584bp
AAATACATCTATAATTAATCATTGCTTCGAGATCAAATTTGGTAATGCTA
TTATTCAAAATTTGAGTATGGCAAATGATAAAATTGGGAATCTCGTCGAT
GCCAGTAAAAGTGtactaaaacttgaaaaaacaacTCTTGATGAAACCAA
GGTTATGAATGTGATGTTTCTCGGTCAAGCTAGTCCTAATGTTTTCACTT
TCACAGGGTCATGCCAGGTTACcatcacaaaatttcaaatggTGAGAAGT
ACGGCAGACGGTAACATATTTCTTGTTGACAATTCCGTTCTGACTCTTGA
AGATACGCAGTTGGAAAATAATTCATATGCTACCGGATTTAAAGTGTTGT
ATTCTAAGATCAATTTGTCAGGTTTTCAATCAGTCGGTAACAGAGTCTTT
GgacaaataaaatttataaatgcAAAGGCAACCTCGATCTTGCATCTCAA
GAACATATCAGTGAAGTTATATGAACTATTGGAGTTTGAAAGAGCGATGG
ACATAATCGATACAGAATTGTATATGGATAATTTTCATACCGAAGTTGAA
ACGTCGCTTTCTTTAAAGTTCGACATAATGAATT
Run BLAST on NCBI

protein sequence of TCONS_00065478-protein

>TCONS_00065478-protein ID=TCONS_00065478-protein|Name=TCONS_00065478-protein|organism=Clytia hemisphaerica|type=polypeptide|length=194bp
NTSIINHCFEIKFGNAIIQNLSMANDKIGNLVDASKSVLKLEKTTLDETK
VMNVMFLGQASPNVFTFTGSCQVTITKFQMVRSTADGNIFLVDNSVLTLE
DTQLENNSYATGFKVLYSKINLSGFQSVGNRVFGQIKFINAKATSILHLK
NISVKLYELLEFERAMDIIDTELYMDNFHTEVETSLSLKFDIMN
Run BLAST on NCBI

transcript from alignment at scaffold_439:591181..591764

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065478 ID=TCONS_00065478|Name=TCONS_00065478|organism=Clytia hemisphaerica|type=transcript|length=584bp|location=Sequence derived from alignment at scaffold_439:591181..591764 (Clytia hemisphaerica)
AATTCATTATGTCGAACTTTAAAGAAAGCGACGTTTCAACTTCGGTATGA
AAATTATCCATATACAATTCTGTATCGATTATGTCCATCGCTCTTTCAAA
CTCCAATAGTTCATATAACTTCACTGATATGTTCTTGAGATGCAAGATCG
AGGTTGCCTTTgcatttataaattttatttgtcCAAAGACTCTGTTACCG
ACTGATTGAAAACCTGACAAATTGATCTTAGAATACAACACTTTAAATCC
GGTAGCATATGAATTATTTTCCAACTGCGTATCTTCAAGAGTCAGAACGG
AATTGTCAACAAGAAATATGTTACCGTCTGCCGTACTTCTCAccatttga
aattttgtgatgGTAACCTGGCATGACCCTGTGAAAGTGAAAACATTAGG
ACTAGCTTGACCGAGAAACATCACATTCATAACCTTGGTTTCATCAAGAg
ttgttttttcaagttttagtaCACTTTTACTGGCATCGACGAGATTCCCA
ATTTTATCATTTGCCATACTCAAATTTTGAATAATAGCATTACCAAATTT
GATCTCGAAGCAATGATTAATTATAGATGTATTT

Coding sequence (CDS) from alignment at scaffold_439:591181..591764

>TCONS_00065478 ID=TCONS_00065478|Name=TCONS_00065478|organism=Clytia hemisphaerica|type=CDS|length=582bp|location=Sequence derived from alignment at scaffold_439:591181..591764 (Clytia hemisphaerica)
ATTCATTATGTCGAACTTTAAAGAAAGCGACGTTTCAACTTCGGTATGAA
AATTATCCATATACAATTCTGTATCGATTATGTCCATCGCTCTTTCAAAC
TCCAATAGTTCATATAACTTCACTGATATGTTCTTGAGATGCAAGATCGA
GGTTGCCTTTgcatttataaattttatttgtcCAAAGACTCTGTTACCGA
CTGATTGAAAACCTGACAAATTGATCTTAGAATACAACACTTTAAATCCG
GTAGCATATGAATTATTTTCCAACTGCGTATCTTCAAGAGTCAGAACGGA
ATTGTCAACAAGAAATATGTTACCGTCTGCCGTACTTCTCAccatttgaa
attttgtgatgGTAACCTGGCATGACCCTGTGAAAGTGAAAACATTAGGA
CTAGCTTGACCGAGAAACATCACATTCATAACCTTGGTTTCATCAAGAgt
tgttttttcaagttttagtaCACTTTTACTGGCATCGACGAGATTCCCAA
TTTTATCATTTGCCATACTCAAATTTTGAATAATAGCATTACCAAATTTG
ATCTCGAAGCAATGATTAATTATAGATGTATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041040XLOC_041040Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065478-proteinTCONS_00065478-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065478-exon-scaffold_439-1491911889:591181..591764TCONS_00065478-exon-scaffold_439-1491911889:591181..591764Clytia hemisphaericaexon
TCONS_00065478-exon-scaffold_439-1510915933:591181..591764TCONS_00065478-exon-scaffold_439-1510915933:591181..591764Clytia hemisphaericaexon
TCONS_00065478-exon-scaffold_439-1575043694:591181..591764TCONS_00065478-exon-scaffold_439-1575043694:591181..591764Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_439supercontigscaffold_439:591181..591764 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.189215	0	0.107119	0.419198	1.27583	0.403272	0.973061	0.910968	0.159448	0.0987508	0.0958499	0.0630079	0.755044	0.457404	0	0.172953	0.355107	0.509562	1.81025	1.36811	1.2806	0.5354	0.325425	0.493097	0.609454	2.17569	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065478 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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