TCONS_00065488 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065488
Unique NameTCONS_00065488
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1735

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065488 ID=TCONS_00065488|Name=TCONS_00065488|organism=Clytia hemisphaerica|type=transcript|length=1735bp
ttggtcaaatcatgAAGAGTGTTAAGGAGtaaaacaaaacaaacaacttA
ATCTGGTgacaataataaaataaaaatggcaACCTGTTTATCGATTGCAA
CTATGGTTCTCTGTTTTCTGGGTTTCTTCATGCTGTGCATCAGTACTGGG
ACCCGAAGATGGAAGGAAGACATCAACTATGTCAGAGGAACACGTACCTA
TATTGGTCTCTGGCAAGCTTGCATTGAATCCGAGGGAAACAATGATGGCT
ACCCTACCACTCAGGGTGTCATCTGTGATAAAGATTACTTGAGACCTCAC
TTGAATGAACCACCTCCATGGTTCAATGCGACACGTGCATTGATGTTGTT
ATCTTGCATTGGAACTGGTTTCGGATTGATCTTTTACATCACAGCTTTCA
TCACGGATAACAGCAAAAAGACCGGCAGCCGATATTTCCCTTGTGTTCTT
ATCATTTTCATATCAGGTCTATGTGCTGTGATTGCATTATCTATCTTCAC
AACTCATCGCAAATGGGGCGTTCAATATGAAGTCGGAGGCGGTGAATTTT
ACGCCCAGTACTGGACACAGGTCGAAGGAGAAGCTGTTGTTGATGGTACA
CGATTCAAAATCGAGACATGGTTGAGATGGTCGTACGGTATTGGTTGGGG
AGGAGTTGCCATGACACTTTTCGCTCTCATTACCGCTGCTTTCTCTGATC
TAACCCGACGACAAGTCCGTTATTAAACTGGAGAATATTTTACTTAAGTA
AAATCAACCAATAGTAACAGAAATGGACTTtatgaattttagatttatga
AGAAccgttttggaaaaaaaattatttacagtAGCTGGTAGTGCTTGTTA
GATGCCAGGATATTGAAGATAACCTTTTTGGTAATAAGTACTCATATTGG
TGAGTAATTCAAGGGACAGAATGTTACTAAAAATAGTTAATGTTTTATTA
TGTACTAGGTTTGAATTTAATTAAAGTTaacaaaattttatgtttttagt
aGAAGAGACTTTGTTTGCCCTACCTGACCGTTTTCTCAGAAATGTAAAAA
ATACTAGGCCCTTAGATGTCTAAATTGAATATTAGGCTGCTGatatccac
taacggattcgtgctccttatactacctgcGTTTTGTAGATGTCTACGAT
TCAGACTAATTGAATATCGAATATGAAGAGGTGATGATGACAACATATTA
TCATCGCTACCAAAATTCTTCTTGCaagttttacaaaaacaaaagtcTCA
ACCATGCTGAATTTCGTCACCTTATTTTTGTATGTTAAAAATTCTTATTA
ATTTTATGGGTGGtcgttttttatatttaatcatttacttcttttccttt
ttataatgattCTTACTTTATTTTAAACgcacaatttttttatatcttgT
ATTTACCAAAAGtatatagaaagatttgaaaacgGCTACATTGGAAGTGA
TTCGACAAAACTTTGCTTCTTCTAAATTTTCGAGTGTGAGAGAGTAAGCT
ACAATCGACTAAACTGCGTGAATTAGAAATAATGGTTATTTTGCACAAAC
GCTCAAAGTAGTGGAAAATTTGCTAATATTTACGTTGTTCTTATGTATTT
ACTTGAAGTATACCATGTAAAGTATAATCCATTTTTATGTTGATTGTCTA
TCATTTTGTACATTGCCTCTCTTTATGGCTCTAATGATTTTTTACTttaa
ttatgaaaaaatataatcctaaaaaaaaacaatca
Run BLAST on NCBI

transcript from alignment at scaffold_44:227215..233807+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065488 ID=TCONS_00065488|Name=TCONS_00065488|organism=Clytia hemisphaerica|type=transcript|length=6593bp|location=Sequence derived from alignment at scaffold_44:227215..233807+ (Clytia hemisphaerica)
ttggtcaaatcatgAAGAGTGTTAAGGAGGTGGGTAGGTATGTTTTGAAa
gtaacggtcttttcccgttacgtgTGGCAACTTTGAATATGGACATTGTC
ACAACCTTGTCTCATTGTCTTACTAGCTTCAATATGACTCCCATTTCCTT
GATGTATTCCTTTCTTTTAAATTGTCTCTCCATCCCGGCTTTTTCTGGCT
CTGTATCACAATTGTTCCCCTCTATTTTCATCcgatttcatcattttctt
ataTACAACATTAGTCTATggtattgtattttttgtctTATTGGCCATTT
CCCTACTTCTTTTATTATAATACCCCAGTGGTGTTGTAGTAGGGAATCTC
AAGATGGCTTTTAGAACCCCCCTTGTAGTTTTTCTAGTCATTGGAAATTC
TTTCCCTCAATATTCGTCCAGCATTCTCAAGGTAATGTGTCAGTGTTGAA
ACAACTGTATTTTCATAAATCAGTATTCTTGCTTCCATTGACACTATTCC
CAGTTGTCCCTTACAATTCTCATAAGTTCTGTTGGAAAcagattcttttc
ttttttagctgTATTTGTTTTTCAATACATCCGCTCTCTGGCAACCAATT
TCCCAGGTAGTTGTATCCACTCTTGGTTTGAATCTTTTCCAGTTTTCACT
ATcatgtagcttgttttaccTTTGTCAATGTTGAACGTGAATTTCCTTTC
ATCTTCCATAATTTGTAGTTTATGACCAACTTTTTCTACATCTATTTTAT
CCTCCCTGCCAAAGCAATATCATCAACATATATGAGGCTATCCACTTCAG
CATTTAGAGTAACTGTCATGCCTGTTGGTTTTCctaatttattgattttt
gaagtacTGCTACAACATAAAATAGGGCCAAAAATTGTTTTACTTCTAAT
TTCTATGTTGAATGTTTCTGTTTCTCCGTACGGTGTTCTAACTGTGCGTT
TCTATTCATTGTATACAGCAGCATGGCTTCTCTTTGCCGTAGTCTATTTT
CGACAATATCACTGACCCAATCCTCCATCCACAGTTTGTTGAAATACTTT
TCTGCATCTACAAACAGTATATTGTATGTAATCCTCTTCAGTTGTCTATT
CATATCCAGGGCTATCCAGTCTTCCTTCGTCGACCCTCCTTTAATCCCTC
CATTTTGATGTTTATCAATTTTGATGTCTTTGGTGACTTTCTGTAATTTT
TGGGTCTTACAATCCTAAATGTTTAAAAGAATTGTCCATCAAATTATCAA
TCAAATTATCTTTTCTTCTTTaagtaaaacaaaacaaacaacttAATCTG
GTgacaataataaaataaaaatggcaACCTGTTTATCGATTGCAACTATG
GTTCTCTGTTTTCTGGGTTTCTTCATGCTGTGCATCAGTACTGGGACCCG
AAGATGGAAGGAAGACATCAACTATGTCAGAGGAACACGTACCTATATTG
GTCTCTGGCAAGCTTGCATTGAATCCGAGGGAAACAATGATGGCTACCCT
ACCACTCAGGGTGTCATCTGTGATAAAGATTACTTGAGACCTCACTTGAA
TGAACCACCTCGTAagtgttattttattaattttctgtAGCGGAAtcttt
gatgatatttttgtaaAGTCAACTTTCTGACTTTGGTTTCACCAGGAAAG
GTGTTTTATCACTCCACAAGAATATTGAGAATACTACTAGTGTGTACGAG
CAGCCAGAGCTTTTATTTTAGTAACAGGTTCTTGACTGATTTTCAACAAC
TTATTTTTATAGCATGGTTCAATGCGACACGTGCATTGATGTTGTTATCT
TGCATTGGAACTGGTTTCGGATTGATCTTTTACATCACAGCTTTCATCAC
GGATAACAGCAAAAAGACCGGCAGCCGATATTTCCCTTGTGTTCTTATCA
TTTTCATATCAGGTGAACGATACTGTCCTTTCTTTCTTCGATGTTAATTT
GCTCTTGttaaattcgaaaataatcgtTGAATTGGAGAccttagttcgaa
ttataatgatcataacttttgatttttggacctaccgggaggtcctttaa
tttgaccgttgtccgttcgtctgttacaagcttttctcgggattggctca
ttagttttttttaattttttgcacNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNaaaactacctaaaaataaggttttttggac
tttatgcaaaattgcttcattagtttttcctgatttttggcagaaagata
gagtgcaaggtaccctaaaatggtgctgaagtaatttttcttggaaaatt
tcttttcgtcgtcaaatacggattttcgcttttttggggaaattcccttt
taccattttcctgttagcagcttttctcgggattggctcattagtttttt
ttaattttttgcacagtgatacaaaatagcaatgcctgaaaagtgacgga
gcccgatttttgaaaaaagattttggggggcaaatttgggccaaaaacta
cctaaaaataaggttttttggactttgtgcaaaattgcttcattagtttt
tcctgatttttggcagaaagatNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgatttt
tggcagaaagatagagtgcaaggtaccctaaaatgtggctgaagtaattt
ttctcggaaaattttttttcgtcgtcaaatacggattttcgctttttggg
ggaaattcccctttaccattttcctgttagcagctcttctagggattggc
tcattagttttttttatttttttgcacaatgatacaaaatagcaatgctt
gaaaagtgacggagcccgatttttgaaaaaaatttttggggggcaaattt
gggccaaaaactacctaaaaataaggttttttggactttNNNNNNNNNNN
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NNNNTCTAAAACTTATTgtgtttgctcaataccaatagtaaaatgtagaa
tacctacttttatctgattttgatcaaggtaggtccattcagcatgttgc
ttgttaattttgattttaattcagGTCTATGTGCTGTGATTGCATTATCT
ATCTTCACAACTCATCGCAAATGGGGCGTTCAATATGAAGTCGGAGGCGG
TGAATTTTACGCCCAGTACTGGACACAGGTCGAAGGAGAAGCTGTTGTTG
ATGGTACACGATTCAAAATCGAGACATGGTTGAGATGGTCGTACGGTATT
GGTTGGGGAGGAGTTGCCATGACACTTTTCGCTCTCATTACCGCTGCTTT
CTCTGATCTAACCCGACGACAAGTCCGTTATTAAACTGGAGAATATTTTA
CTTAAGTAAAATCAACCAATAGTAACAGAAATGGACTTtatgaattttag
atttatgaAGAAccgttttggaaaaaaaattatttacagtAGCTGGTAGT
GCTTGTTAGATGCCAGGATATTGAAGATAACCTTTTTGGTAATAAGTACT
CATATTGGTGAGTAATTCAAGGGACAGAATGTTACTAAAAATAGTTAATG
TTTTATTATGTACTAGGTTTGAATTTAATTAAAGTTaacaaaattttatg
tttttagtaGAAGAGACTTTGTTTGCCCTACCTGACCGTTTTCTCAGAAA
TGTAAAAAATACTAGGCCCTTAGATGTCTAAATTGAATATTAGGCTGCTG
atatccactaacggattcgtgctccttatactacctgcGTTTTGTAGATG
TCTACGATTCAGACTAATTGAATATCGAATATGAAGAGGTGATGATGACA
ACATATTATCATCGCTACCAAAATTCTTCTTGCaagttttacaaaaacaa
aagtcTCAACCATGCTGAATTTCGTCACCTTATTTTTGTATGTTAAAAAT
TCTTATTAATTTTATGGGTGGtcgttttttatatttaatcatttacttct
tttcctttttataatgattCTTACTTTATTTTAAACgcacaattttttta
tatcttgTATTTACCAAAAGtatatagaaagatttgaaaacgGCTACATT
GGAAGTGATTCGACAAAACTTTGCTTCTTCTAAATTTTCGAGTGTGAGAG
AGTAAGCTACAATCGACTAAACTGCGTGAATTAGAAATAATGGTTATTTT
GCACAAACGCTCAAAGTAGTGGAAAATTTGCTAATATTTACGTTGTTCTT
ATGTATTTACTTGAAGTATACCATGTAAAGTATAATCCATTTTTATGTTG
ATTGTCTATCATTTTGTACATTGCCTCTCTTTATGGCTCTAATGATTTTT
TACTttaattatgaaaaaatataatcctaaaaaaaaacaatca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041045XLOC_041045Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065488-exon-scaffold_44-1491911889:227215..227243TCONS_00065488-exon-scaffold_44-1491911889:227215..227243Clytia hemisphaericaexon
TCONS_00065488-exon-scaffold_44-1510915933:227215..227243TCONS_00065488-exon-scaffold_44-1510915933:227215..227243Clytia hemisphaericaexon
TCONS_00065488-exon-scaffold_44-1575043694:227215..227243TCONS_00065488-exon-scaffold_44-1575043694:227215..227243Clytia hemisphaericaexon
TCONS_00065488-exon-scaffold_44-1491911889:228489..228775TCONS_00065488-exon-scaffold_44-1491911889:228489..228775Clytia hemisphaericaexon
TCONS_00065488-exon-scaffold_44-1510915933:228489..228775TCONS_00065488-exon-scaffold_44-1510915933:228489..228775Clytia hemisphaericaexon
TCONS_00065488-exon-scaffold_44-1575043694:228489..228775TCONS_00065488-exon-scaffold_44-1575043694:228489..228775Clytia hemisphaericaexon
TCONS_00065488-exon-scaffold_44-1491911889:228977..229126TCONS_00065488-exon-scaffold_44-1491911889:228977..229126Clytia hemisphaericaexon
TCONS_00065488-exon-scaffold_44-1510915933:228977..229126TCONS_00065488-exon-scaffold_44-1510915933:228977..229126Clytia hemisphaericaexon
TCONS_00065488-exon-scaffold_44-1575043694:228977..229126TCONS_00065488-exon-scaffold_44-1575043694:228977..229126Clytia hemisphaericaexon
TCONS_00065488-exon-scaffold_44-1491911889:232539..233807TCONS_00065488-exon-scaffold_44-1491911889:232539..233807Clytia hemisphaericaexon
TCONS_00065488-exon-scaffold_44-1510915933:232539..233807TCONS_00065488-exon-scaffold_44-1510915933:232539..233807Clytia hemisphaericaexon
TCONS_00065488-exon-scaffold_44-1575043694:232539..233807TCONS_00065488-exon-scaffold_44-1575043694:232539..233807Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_44supercontigscaffold_44:227215..233807 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
30.5909	29.5438	49.4206	58.4397	133.876	112.923	113.783	113.986	108.683	107.127	75.9662	69.5547	69.477	68.6667	56.9716	59.7288	77.9139	91.0839	70.3658	86.3247	94.3921	95.8146	65.348	67.2892	45.5072	58.1067	111.125	87.0556	83.6788	84.0245
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065488 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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