TCONS_00065666 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065666
Unique NameTCONS_00065666
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1123

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065666 ID=TCONS_00065666|Name=TCONS_00065666|organism=Clytia hemisphaerica|type=transcript|length=1123bp
cgcaaatatctcgatgctctcgaccaatcaaaacgctgatattttttggg
TCGAAAATAGTGTTTTTACCCTATTTTACCCATTCCAAAGTAGACACATA
CCTACtataatattttcttgaataGAAATCGATTGAGATTGAACTGATAA
ATAATTATCTCATTGCAGAAAGTCGTAAAAGAAAGACGGATAAAGTGGAT
ActgctaaaaagaaaaagaaaggaaaaaaagaTGACAGTGAcgatccgcc
atctttgatgtCTTCATTATCCACATCAGCAACACCTTTAATTACCATGG
CTACCGACATGAATGTTCTCGATATGCCAGTCGATCCTAACGAACCAACA
TATTGTCTTTGTCATCAGGTTTCATACGGTGAAATGATTGGATGCGATAA
CAATGATTGTCTTATCGAATGGTTTCATTTTGGATGTGTTGGTTTGACCA
CCAAGCCTAAAGGAAAATGGTATTGTCCCAAATGTTCCGCTGATAGAAAG
AAGAAATAGATGATAGGGGGGACGCTGCACCTTTTTTAttggaaaagtga
aaaaatgatCTTCGAAAACGAATTTCGATATCGTCAGAGGAGAGAACAAT
CTAGTGCTCGAACAGTGTCTTTGTAAAAGAGATGACATCAAAAGCCGAGT
TACTTAGCTGGGCTGGATTAGGTAGAATGTACGTCCATTGTGGATATTGG
CATACATGCAAACGAACAAGAAGTAGAAATATACAAATGAGATCCATGAA
GAGAAATATACAAATGTTTTAAACAATGGATGGTTCCAGAGTAATTGTTT
GAATTTAAATGATACACTGTTTTTAGTGCTTCATTGGCCCACTGAAACAT
GAAATGTGATACTACTCTATTTTAGAATCTCAAATCCATGAATTATCATA
AACATTTTGGTAAACATTTATTGAGCTTTTAGGAGGAGGTCCTATTTTTC
CTATACTGTTGTCTGTGAACAACATACTGAGTTCTGAATGATTACAAAAC
TTTGTTATTATTTGTTTAATCAGTgaatagtttctttttaagtcAACTAA
ATagttgtttttaaaaaagtaaTCAATTAGTTGGATATTCAATTCGAACA
ATAATTTAAtaggttttaaaaaa
Run BLAST on NCBI

transcript from alignment at scaffold_442:107975..110319+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065666 ID=TCONS_00065666|Name=TCONS_00065666|organism=Clytia hemisphaerica|type=transcript|length=2345bp|location=Sequence derived from alignment at scaffold_442:107975..110319+ (Clytia hemisphaerica)
cgcaaatatctcgatgctctcgaccaatcaaaacgctgatattttttggg
TCGAAAATAGTGTTTTTACCCTATTTTACCCATTCCAAAGTAGACACATA
CCTACtataatattttcttgaataGAAATCGATTGAGATTGAACTGATAA
ATAATTATCTCATTGCAGAAAGTCGTAAAAGAAAGACGGATAAAGTGGAT
ActgctaaaaagaaaaagaaaggaaaaaaagagtAAGCGATCATTAGAAC
CTTTATTCCTCATAAGACAACAAAAACTGGCCCATATCCCTTTTGACCTT
TTGTCCAAGTTAACAACTGGATCATTCGTTTAATGGCATGATTTTCACTT
AAAGATAGCAAACTTTATTGAAAATGTATAAAGAATTCAGATTTAACTTA
TTCCCACTTTTGCACATTTTTCAGTGACAGTGAcgatccgccatctttga
tgtCTTCATTATCCACATCAGCAACACCTTTAATTACCATGGCTACCGAC
ATGAATGTTCTCGATATGCCAGTCGATCCTAACGAACCAACATATTGTCT
TTGTCATCAGGTAGATTAGATATTTCAGATTCAATATGTCAGGCTCAAAC
CTTGTGTCTTATTGGGTGGAATCTCGTGTATTTTTCTCACCAGGCactat
ttgtctctcttcctgGTGATATGAATTCTGTTTATCCTCTTAGGTTTCAT
ACGGTGAAATGATTGGATGCGATAACAATGATGTAAGTCCTATTCAACTT
TTAACCTTTCAGTGTACATAAAAAATACTAAGATAATTTATCCCATGGGA
ATGCTAAACACCTTTTCATAATGGGAAGTCAAAGAGTTAGTTAGGGATTA
TTGTTGCGATTGAGAATCAGTTGTATTTCTTCTTTGACATTCCAATACTT
TAGATGGAAAGAAAGCTTTAAAGGTTAAGTGAAAACTAAGACTCTACTCG
CTTATTTCTTCCGATTAACTTAAAatactgttgtttttttcaGTGTCTTA
TCGAATGGTTTCATTTTGGATGTGTTGGTTTGACCACCAAGCCTAAAGGA
AAATGGTATGTGTTCTTCCTTCCTTTACAAACGATTTTTGCATTACTAGT
GCAACTGTTTTACTGATTGAAATATTTAGTTCACACTGGAAGCACATTTG
GGAACAGTGTCGGGTTTTGGACTCCATCACTCCAGAAATCACATGTAGCG
TGAAATGAACAAAGTCGCCATCTTACTTCAGTTCTCAGTTTAGTAGTTCG
CTATCAAACTGAGGTCAATGCGCACATATATAAGCGTTAGCACAATATGG
AAAGTCCTTGATAATGTCATCGTTGAATATCGGAACGCTCAATGTGGTTG
GCATCCCCTTGTGACATCATAGAAGGTGACGTTGTTCATCGCATGCTACA
CTTGGTAACTGGAGTGATCGAGTCCGAAACCAGTCATTTACAAACATTCT
CCCCTTTTCATAAAAACTAGATTTCCTTTTActtattttttcataatttt
gaggctttaaaaatgttctttaaataGCCTTGTGTGCTTATTATAATTAT
TGATCTTATAAAAACCATTCTCGCTTtgaattttgtgacttttttaaacc
tttttacCCACTATAAGGATGTCACCGGTATCAAGTTTGTAGACCTTGAA
AAGTATCTAATCCTTATCATTATTTGCTGCTTCATGTTCAGGTATTGTCC
CAAATGTTCCGCTGATAGAAAGAAGAAATAGATGATAGGGGGGACGCTGC
ACCTTTTTTAttggaaaagtgaaaaaatgatCTTCGAAAACGAATTTCGA
TATCGTCAGAGGAGAGAACAATCTAGTGCTCGAACAGTGTCTTTGTAAAA
GAGATGACATCAAAAGCCGAGTTACTTAGCTGGGCTGGATTAGGTAGAAT
GTACGTCCATTGTGGATATTGGCATACATGCAAACGAACAAGAAGTAGAA
ATATACAAATGAGATCCATGAAGAGAAATATACAAATGTTTTAAACAATG
GATGGTTCCAGAGTAATTGTTTGAATTTAAATGATACACTGTTTTTAGTG
CTTCATTGGCCCACTGAAACATGAAATGTGATACTACTCTATTTTAGAAT
CTCAAATCCATGAATTATCATAAACATTTTGGTAAACATTTATTGAGCTT
TTAGGAGGAGGTCCTATTTTTCCTATACTGTTGTCTGTGAACAACATACT
GAGTTCTGAATGATTACAAAACTTTGTTATTATTTGTTTAATCAGTgaat
agtttctttttaagtcAACTAAATagttgtttttaaaaaagtaaTCAATT
AGTTGGATATTCAATTCGAACAATAATTTAAtaggttttaaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041147XLOC_041147Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065666-exon-scaffold_442-1491911889:107975..108206TCONS_00065666-exon-scaffold_442-1491911889:107975..108206Clytia hemisphaericaexon
TCONS_00065666-exon-scaffold_442-1510915933:107975..108206TCONS_00065666-exon-scaffold_442-1510915933:107975..108206Clytia hemisphaericaexon
TCONS_00065666-exon-scaffold_442-1575043694:107975..108206TCONS_00065666-exon-scaffold_442-1575043694:107975..108206Clytia hemisphaericaexon
TCONS_00065666-exon-scaffold_442-1491911889:108399..108534TCONS_00065666-exon-scaffold_442-1491911889:108399..108534Clytia hemisphaericaexon
TCONS_00065666-exon-scaffold_442-1510915933:108399..108534TCONS_00065666-exon-scaffold_442-1510915933:108399..108534Clytia hemisphaericaexon
TCONS_00065666-exon-scaffold_442-1575043694:108399..108534TCONS_00065666-exon-scaffold_442-1575043694:108399..108534Clytia hemisphaericaexon
TCONS_00065666-exon-scaffold_442-1491911889:108668..108706TCONS_00065666-exon-scaffold_442-1491911889:108668..108706Clytia hemisphaericaexon
TCONS_00065666-exon-scaffold_442-1510915933:108668..108706TCONS_00065666-exon-scaffold_442-1510915933:108668..108706Clytia hemisphaericaexon
TCONS_00065666-exon-scaffold_442-1575043694:108668..108706TCONS_00065666-exon-scaffold_442-1575043694:108668..108706Clytia hemisphaericaexon
TCONS_00065666-exon-scaffold_442-1491911889:108968..109029TCONS_00065666-exon-scaffold_442-1491911889:108968..109029Clytia hemisphaericaexon
TCONS_00065666-exon-scaffold_442-1510915933:108968..109029TCONS_00065666-exon-scaffold_442-1510915933:108968..109029Clytia hemisphaericaexon
TCONS_00065666-exon-scaffold_442-1575043694:108968..109029TCONS_00065666-exon-scaffold_442-1575043694:108968..109029Clytia hemisphaericaexon
TCONS_00065666-exon-scaffold_442-1491911889:109666..110319TCONS_00065666-exon-scaffold_442-1491911889:109666..110319Clytia hemisphaericaexon
TCONS_00065666-exon-scaffold_442-1510915933:109666..110319TCONS_00065666-exon-scaffold_442-1510915933:109666..110319Clytia hemisphaericaexon
TCONS_00065666-exon-scaffold_442-1575043694:109666..110319TCONS_00065666-exon-scaffold_442-1575043694:109666..110319Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_442supercontigscaffold_442:107975..110319 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
35.4001	36.3977	17.2731	12.8384	38.7356	28.8477	32.6372	29.7603	28.5768	24.5932	21.1966	22.6198	18.303	17.2921	15.2964	17.5271	25.0135	27.4607	17.1513	19.3437	28.7192	27.3485	48.8098	40.1632	21.1709	24.4364	21.2365	17.6088	26.2679	27.9607
Blast
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BLAST of TCONS_00065666 vs. Swiss-Prot (Human)
Match: ING4 (Inhibitor of growth protein 4 OS=Homo sapiens GN=ING4 PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 5.930e-37
Identity = 56/65 (86.15%), Postives = 61/65 (93.85%), Query Frame = 3 
Query:  312 NVLDMPVDPNEPTYCLCHQVSYGEMIGCDNNDCLIEWFHFGCVGLTTKPKGKWYCPKCSADRKKK 506
            +VLDMPVDPNEPTYCLCHQVSYGEMIGCDN DC IEWFHF CVGLTTKP+GKW+CP+CS +RKKK
Sbjct:  185 DVLDMPVDPNEPTYCLCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQERKKK 249
The following BLAST results are available for this feature:
BLAST of TCONS_00065666 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ING45.930e-3786.15Inhibitor of growth protein 4 OS=Homo sapiens GN=I... [more]
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