TCONS_00065671 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00065671
Unique Name	TCONS_00065671
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1062

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_442:156878..161742+

transcript sequence

>TCONS_00065671 ID=TCONS_00065671|Name=TCONS_00065671|organism=Clytia hemisphaerica|type=transcript|length=1062bp
tgaatttcttgatttgattattgTCAAGTTGTCAGTTcaatcatttaatt
ttttttgctcgaaGAAATTTTTTCCCATGCTAATTTGCTGTATTGTCGAT
TGTACTGCGCATAAATGGTTGTTATTCACTGGTATTTGCTCGATATCTTG
AAAAATTGACTTGACATAGATCCTGTTAAAGTTGCCtacttttatttgaa
aattgtgTTTGAAACGGTGGCTTAAAGTGATTTGTCATTGTTGGATCATT
TCTTTGAGACAAAAAAGTTGGATAATCGAAAAAAATTCGTCAATATAGTT
TTGTTCAAGTAGCAGCTTTTGGATAACTAGATTTTATTAAGACGCATGAC
GTAATCTCTTTGTGGTTTTGAAAAGATGAGATGTCAACATTCATCAATGA
CTTAGGCTTATCACCACAATCTCGTTCACGCGGCGCCAGTGCGACGAGTA
GACGGTCCTCGTGGCTCGTCGGTGCTGCAACTTGGGCTCGACTGAGAAAG
ACTGTTGGCTCCCTCCAACGAACCTTACAAAGGAGAGGTTCTCGCGCATG
CTCAGAATGTTCAAGCGAACACTGCGACTGTCAAAACCACCTTGACATTG
AAGGTCCGAATCAAGTTAATCTTCTTGCAACTACTAAAGATCTTATTCGA
ACGCCACGCGCCCCTAATCAAGATGGGGAGGAACTACCGACGCCCGAGAG
CGCCCAAGATAACAACGACCTGACGGTGCAACTACATCGTGTGCTGGGAG
CCTTAGAATCGAACATCGAGTTACGAAAACAGAATAAACCTAACACTGAT
GCCACTGGCGAGCGGTCGAACGTCTCCAACGCAGCGGACGCGAGCGAAGT
GGATTTGGAAAGTAACTTCTTGGGTGAAGCTCGAGAGgaaTTCGTGAATC
CGTCCTCGTTGCTCAGCCCAGACTCCATGATGAGCGGTGGACCACAAATC
ACGGAGATGCTGAAGCAAATCGACAACCTTCGCAAAGAGAAACGAGATTG
TAAGTTTTATTATCCACCATAAGAATGATTAGATTCGTCTCTCACCCCTT
TTATACACGTGT

Run BLAST on NCBI

transcript from alignment at scaffold_442:156878..161742+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00065671 ID=TCONS_00065671|Name=TCONS_00065671|organism=Clytia hemisphaerica|type=transcript|length=4865bp|location=Sequence derived from alignment at scaffold_442:156878..161742+ (Clytia hemisphaerica)
tgaatttcttgatttgattattgTCAAGTTGTCAGTTcaatcatttaatt
ttttttgctcgaaGAAATTTTTTCCCATGCTAATTTGCTGTATTGTCGAT
TGTACTGCGCATAAATGGTTGTTATTCACTGGTATTTGCTCGATATCTTG
AAAAATTGACTTGACATAGATCCTGTTAAAGTTGCCtacttttatttgaa
aattgtgTTTGAAACGGTGGCTTAAAGTGATTTGTCATTGTTGGATCATT
TCTTTGAGACAAAAAAGTTGGATAATCGAAAAAAATTCGTCAATATAGTT
TTGTTCAAGTAGCAGCTTTTGGATAACTAGATTTTATTAAGACGCATGAC
GTAATCTCTTTGTGGTTTTGAAAAGATGAGATGTCAACATTCATCAATGA
CTTAGGCTTATCACCACAATCTCGTTCACGCGGCGCCAGTGCGACGAGTA
GACGGTCCTCGTGGCTCGTCGGTGCTGCAACTTGGGCTCGACTGAGAAAG
ACTGTTGGCTCCCTCCAACGAACCTTACAAAGGAGAGGTACAATAATGCT
TTTGACTGCCATGATGGTCGATCCCGGGCTGATATTGATATCTTTTGTTG
aaagtttgttttgttgaaattcGACCTTAAGGAAATTTTTCTTCGGGTTT
CCAAAGAGTTTTCAAGCTGAAACCGTCCttgttttaagggctctgaccat
agtgaattttgatACTTGTCATGTACAACATATaaatttctgcctgatgt
agctaacaaaactttgacatggtatacattttctgttaggccaactatcc
tTGAGTCTCATCTCAAttgttcatagaaaaacagctatTACTTTTGATAC
CAATTTAGAAAATtgttccgaaaaatttaaaacagttcaattctttgcgg
acagtttgaaaaaatttcaaaataaaaaggttaattacccattaaaactt
agcactttttataaaagaggacgatgcaacatattattaacgtcttttta
aagttcataacgtcatttttgcaattaaattcttaattacttttaaGGGA
TTTGATCAAAAAAGCAATTTGTAAAGGCAAtgctttgttaaaagtgtaaa
ggaacctgaaacataacttttatgctcaaataccaaaatcaattttttga
ctatggtcagagcccttaagttcgAATTTCAGAAAGGTTTGAAGAATGTC
TGGAAGTTAGAGAAAATCGGCCTAATTTCTTGCCGTATTATTTAACCTTT
TATGAGCAGAGTTTATACCTACAAAGGTATAATTTCCAATAAATCTGGAA
TGTCACTTAAACATGAATGATAAATGATGTGATTGTGATTCATACTGTAA
CATGATCTACACAGACTTTCTCAGTTTCACAACACAACCTTAAAGTAAGC
AAGGATGACATCACAGTTGTACTGATAGAAATCGAAGAGTACAATGTTTG
AGCTCTATCAGCCGTTTGAAGCACATATTCTTTTACTCTTTCACGCTAGA
TTTCCCGTCTCGTCCCGtggaagtgtgtccagttttCAAGTCGATTAGTC
CGCCAAGTAATTTAccttagattttcgaacgttcgaacttCGAAATATTC
AAACACTNtgttcatagaaaaacagctatTACTTTTGATACCAATTTAGA
AAATtgttccgaaaaatttaaaacagttcaattctttgcggacagtttga
aaaaatttcaaaataaaaaggttaattacccattaaaacttagcactttt
tataaaagaggacgatgcaacatattattaacgtctttttaaagttcata
acgtcatttttgcaattaaattcttaattacttttaaGGGATTTGATCAA
AAAAGCAATTTGTAAAGGCAAtgctttgttaaaagtgtaaaggaacctga
aacataacttttatgctcaaataccaaaatcaattttttgactatggtca
gagcccttaagttcgAATTTCAGAAAGGTTTGAAGAATGTCTGGAAGTTA
GAGAAAATCGGCCTAATTTCTTGCCGTATTATTTAACCTTTTATGAGCAG
AGTTTATACCTACAAAGGTATAATTTCCAATAAATCTGGAATGTCACTTA
AACATGAATGATAAATGATGTGATTGTGATTCATACTGTAACATGATCTA
CACAGACTTTCTCAGTTTCACAACACAACCTTAAAGTAAGCAAGGATGAC
ATCACAGTTGTACTGATAGAAATCGAAGAGTACAATGTTTGAGCTCTATC
AGCCGTTTGAAGCACATATTCTTTTACTCTTTCACGCTAGATTTCCCGTC
TCGTCCCGtggaagtgtgtccagttttCAAGTCGATTAGTCCGCCAAGTA
ATTTAccttagattttcgaacgttcgaacttCGAAATATTCAAACACTGC
CAGTTCGATCATGATTTGGACTAAACTTGAAGTCAATCGTATTCAAATCG
TAATTCTTTTTGACTTGAAGAATACTATTGTTTTTCTCTCAATAGGTTCT
CGCGCATGCTCAGAATGTTCAAGCGAACACTGCGACTGTCAAAACCACCT
TGACATTGAAGGTCCGAATCAAGTTAATCTTCTTGCAACTACTAAAGATC
TTATTCGAACGCCACGCGCCCCTAATCAAGATGGGGAGGAACTACCGACG
CCCGAGAGCGCCCAAGATAACAACGACCTGACGGTGCAACTACATCGTGT
GCTGGGAGCCTTAGAATCGAACATCGAGTTACGAAAACAGAATAAACCTA
ACACTGATGCCACTGGCGAGCGGTCGAACGTCTCCAACGCAGCGGACGCG
AGCGAAGTGGATTTGGAAAGTAACTTCTTGGGTGAAGCTCGAGAGGTAAT
ACTCTTTTATTTGCTCACGTTTTTTGTCTCTGCTAATATATTGTCTCCCT
TCTACAACCATTCAAATTCACTCACTTCGATATTCGAGTTACAGAATAGA
AGTTGACTTATTGAAACTAAACGATCTATTTTGTATTAAAATTTACTTAG
TTTTCAATACATTAAATAGTTTTGATATAGAAATGTCGGTAAAGAGCTAT
GTGCCATTTTAGTTTGACTAAACACTGATTGCTACAATCAGTTCCAAAAT
ACTTGGTACAAAAGGgaaatttcccacgaaattttataaccacaaacagt
tttgaagcgctctaaattaggttggaagggtagtcttaaatctgagtttt
aacgcctccaaaagttcaaaaatggtccggtatggcttgaaatatagcct
agaaaccaataaatccctcccagatcgaaatattcgatgaaatcaagttg
aaggcccaaaattgacattctcgctcgaacttttcgaaaaatggtaaaat
agccaaaattgccaatatgttatggcactgNtgatttaccgtcgtcctca
gttagtcatgatctagtcaaattagaaccttaccgtctccgtcgctgaaa
aacacacatacataaactcggtaatatctAGACAAACCAGAAGCTAGTAC
CGTCTCCGTCACAAAAGcacaaatacataaacttgctattaAAACGTTTG
AAGGGACGACTAGCTCATCTTTCTTCCgacctcttttttcttttagtggA
AAAGCAGCTTCAAGAGAACAGCATTCAAGGTTTCGTCAATGCTGGCCACG
GAGAAGAGGTATGTGATACTACTAATCTCATTTTTCTTTAACCTTCATTT
GAAATAGACCATTTTCCGAAAAAGGATTCGAATCGGGTTATCGATCTTTA
ACTACTTACAGTCTGAGTCTGTGTGTTTTGAGACTGAATGTTACATGGTG
GATGGTATTACATTGTGAAGTAACCAGGCTGATCTCAAACACATATACGA
AGAGGCTTTATATGTCATTTTCATAAATAGATTACACTGTAATAGAAAGG
GATTTATCTTTGAGGGTGAGATTTGGAGAGAGAGGCAATCGACGTaaacc
aaaataaataaacCTTGCTCTTGTGTTGTATAAGTGTCGTGTTGTTTTCT
CATGATCAGAAAATCCCTTATTTCTAATCTTGACTTCCTTCCTCGCGTGA
GCTTTTAAAACAGCAAATTCTTTGGATGACTTTCTAATCTTTTGTAAAAT
AGTTATTATGTAAATGAAGAGGGTACAAAAATTCTCCCATNATTGTCTCC
CTTCTACAACCATTCAAATTCACTCACTTCGATATTCGAGTTACGGAATA
GAAGTTGACTTATTGAAACTAAACGATCTATTTTGTATTAAAATTTACCT
AGTTTGTAATAGATTAAATAAATAGTTTTGATATAGAAATGTCGGTAAAG
AGCTATGTGCCATTTTAATTTGGCTAAACAATGATTGCTACAATCAgttc
caaaatacttggcacaaaagggaaatttcccacgaaattttataaccacG
AACAATTttgaagcgctctaaattaggttggaagggtagtcttaaatctg
agttttaacgctagacttaagacttggaAGACCTtgggatctgaggatcc
aaaagttcaaaaatggtccagtagaataaatccctcccagatcgaaatat
tcgataaaatcaagttgaaggcccaaaattgacattctcgctcgaacttt
tcgaaaagtggtaaaatagccaaaattgccaatatgttatggcactaaTT
GTAGTTTCTAAAGcagtgaaattttctttttgttttaaaggaaTTCGTGA
ATCCGTCCTCGTTGCTCAGCCCAGACTCCATGATGAGCGGTGGACCACAA
ATCACGGAGATGCTGAAGCAAATCGACAACCTTCGCAAAGAGAAACGAGA
TTGTAAGTTTTATTATCCACCATAAGAATGATTAGATTCGTCTCTCACCC
CTTTTATACACGTGT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_041148	XLOC_041148	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00065671-exon-scaffold_442-1491911889:156878..157414	TCONS_00065671-exon-scaffold_442-1491911889:156878..157414	Clytia hemisphaerica	exon
TCONS_00065671-exon-scaffold_442-1510915933:156878..157414	TCONS_00065671-exon-scaffold_442-1510915933:156878..157414	Clytia hemisphaerica	exon
TCONS_00065671-exon-scaffold_442-1575043694:156878..157414	TCONS_00065671-exon-scaffold_442-1575043694:156878..157414	Clytia hemisphaerica	exon
TCONS_00065671-exon-scaffold_442-1491911889:159373..159722	TCONS_00065671-exon-scaffold_442-1491911889:159373..159722	Clytia hemisphaerica	exon
TCONS_00065671-exon-scaffold_442-1510915933:159373..159722	TCONS_00065671-exon-scaffold_442-1510915933:159373..159722	Clytia hemisphaerica	exon
TCONS_00065671-exon-scaffold_442-1575043694:159373..159722	TCONS_00065671-exon-scaffold_442-1575043694:159373..159722	Clytia hemisphaerica	exon
TCONS_00065671-exon-scaffold_442-1491911889:161568..161742	TCONS_00065671-exon-scaffold_442-1491911889:161568..161742	Clytia hemisphaerica	exon
TCONS_00065671-exon-scaffold_442-1510915933:161568..161742	TCONS_00065671-exon-scaffold_442-1510915933:161568..161742	Clytia hemisphaerica	exon
TCONS_00065671-exon-scaffold_442-1575043694:161568..161742	TCONS_00065671-exon-scaffold_442-1575043694:161568..161742	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_442	supercontig	scaffold_442:156878..161742 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.302718	0	0.625309	0.687005	0	0.20295	0.125019	0.338461	0.0798185	0	0	0	1.64533	1.09053	0	0.0568109	2.33609	1.6218	1.84984	1.14009	3.2984	4.16499	1.26603	1.95642	1.59576	2.09744	0.283754	0	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00065671 vs. Swiss-Prot (Human)

BLAST of TCONS_00065671 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00065671 (transcript) - C. hemisphaerica