TCONS_00065682 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065682
Unique NameTCONS_00065682
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1352

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065682 ID=TCONS_00065682|Name=TCONS_00065682|organism=Clytia hemisphaerica|type=transcript|length=1352bp
CGACGGTAAATGGACAGAGTACAGTGAGTTCAGTGAATGTTCAGCCTCGT
GTGGAGGTGGATCACAAAAAAGAACACGATCTTGCACAAACCCTGCACCA
GCACATGGTGGAAAAGAATGCGAAGGATCTGATGAAGATGAACAAGAATG
TGGAACTGATCCTTGTCCAGTCGACGGTAAATGGACAGAGTACAGTGAGT
TCAGTGAATGTTCAGCCTCGTGTGGAGGTGGATCACAAAAAAGAACACGA
TCTTGCACAAACCCTGCACCAGCACATGGTGGTAAAGAATGCGAAGGATC
TGATGAAGATGAACAAGAATGTGGAACTGATCCTTGCCCAGTTGATGGTA
AATGGGGAGCTTATGGAGCTTTCAGCCAATGTAACAAGCCTTGTGGAGGT
GGAAGCCAATCACGATCGAGATCTTGCAACAACCCTGCACCAAAGTATGG
AGGAAAAGCTTGTGTTGGATCAGCCACTGACAGCCGAGCCTGTAACACAC
AAAACTGCCCAGTCGATGGTAAATGGGGAGCTTATGGCGCTTTCAGCCAA
TGTAACAAGCCTTGTGGAGGTGGAAGCCAATCACGATCGAGATCTTGCAA
TAACCCCGCACCAAAATACGGAGGAAAAGCTTGTGTTGGATCAGCCACTG
ACAGCCGAGCTTGTAACACTCAAAACTGCCCAGTTGATGGTAAATGGGGA
GCTTATGGAGCTTTCAGCCAATGTAACAAGCCTTGTGGAGGTGGAAGCCA
ATCACGATCCAGATCTTGCAACAACCCTGCACCAAAATACGGAGGAAAAG
CTTGTGTTGGATCAGCAACTGACAGCCGAGCCTGTAACACACAAAATTGT
CCAATCAACGGAAAATGGGGATCATGGAGCGGATATGGATCTTGTAACAG
AAAATGTGGAACAGGAAGTCAAAAACGAACCAGATCTTGTAACAATCCTT
CACCAAAATACAATGGTGCTTCATGTTCAGGTTCATCTCAACAAAGCAGA
AACTGCAACACTCACTCTTGTTATTCTGGATATATGGAATTCAAAACATG
CGAAGGATCGTCACGTAATGTCGATTGTGGATCtggaaaaatcatcaaat
tgcACGACTACTTCTGGGGACGAACTTCCAAGTCATACTGCCGAAGTGGT
ATTGATTGGTTCTGGAGCACAAGCTGCCGAGGTGGTCATGGACGTATTGC
CAACAGATGTCACAACAGACAATCATGCAAATTGGAAGCTAACAATAGCT
GGATGAACGATGACCCATGTTTTGGAACACCAAAATACGCCTGGGTCAAA
TACCGGTGTTACCAAAGTCCTTATTAAGTGATATTTTCATAACATATACA
AA
Run BLAST on NCBI

transcript from alignment at scaffold_442:66751..79927-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065682 ID=TCONS_00065682|Name=TCONS_00065682|organism=Clytia hemisphaerica|type=transcript|length=13177bp|location=Sequence derived from alignment at scaffold_442:66751..79927- (Clytia hemisphaerica)
CGACGGTAAATGGACAGAGTACAGTGAGTTCAGTGAATGTTCAGCCTCGT
GTGGAGGTGGATCACAAAAAAGAACACGATCTTGCACAAACCCTGCACCA
GCACATGGTGGAAAAGAATGCGAAGGATCTGATGAAGATGAACAAGAATG
TGGAACTGATCCTTGTCCAGGTATGTTGCTTGCGATGAGATATCTCACCC
TAATCAAGAGCCCTCTAATAACGTTTGTCTTATACTCCGACAAGCTTAAA
GTAATTGTACTCTTTTTCTTACTGGGGCAGGTGGGTATTGCAAATTCTTA
ATAAGCATGGACTGCATCACCTCCACAATCCTCACTACATATGCTGCAAG
CTCCGTTACTCCACAATATGCATAATTTTGCCTTCTGGGTTTACTTTATA
TGCTGGGGGTAAATTAAATAAAACTTCTAGATCTACATAATGTAGCTTCA
GTACAAGACACTCGAGTCCTCGTCAAGTATGCTGAAAATCATAAAATAGC
AAAATAAAATGCTCCTTAAGTTTTGAATTTTTTTCTAAAAATCTAGTTGA
TGGTAAATGGGGAGCTTATGGAGCTTACAGCAAATGTAGTAAAGATTGCG
GAGGTGGGAGCCAATCCCGATCGAGATCTTGCAACAACCCTGCACCAAAG
TATGGAGGAAAAGCTTGTGTTGGATCAGCCACTGACAGCCGAGCCTGTAA
CACACAAAACTGTCCTAGTAAGTTTAGCTGCTAGTCCAATTCGAAAAACA
AGAAGACTTTACCATGTGTGTATTACGATGAGATTCAAAGAAGTGAAATA
TTTTCCTATCAATTTTCAATTTTCCTTGTAGACTGAAAAACTTCTCTAGG
AATGACACTATCAGGGGTGACAAGACAGCCGTTATTATTCTTTAATAACT
ATGGTTCCTTCCATTCTTTGAAATAAATTAACCTAAAAATCATTCTAACT
GGGACAATGTGTAATAGTTTTGAAGCAGAAAGAGTCCTCTATTTACCGAT
ATTTAGCTTGCACCTACTTTTAAGCACTTTTTCCGTTCTTTTAGTCAATG
GAAAATGGGGATCATGGAGCGGATATGGATCTTGTAACAGAAAATGTGGA
ACAGGAAGTCAAAAACGAACCAGATCTTGTAATAATCCTTCACCAAAATA
CAATGGTGCTTCATGTTCAGGTTCATCTCAACAAAGCAGAAACTGCAACA
CTCACTCTTGTAAGTTGCACTTTTATCATCTTAGATTACCTTTTAAACTT
ACTTCGCCAGCAATTCCACAAACCCCATTTAGCTTGAAGCTTTATTTCTT
AGATTCGTAATTTATGAGCTTAGTTTTTCTTTACCTGATTACTGATCTCT
CCACAAGTGCACAACGTAAAAATTGAAAAGGAAATGGTTGAAGCATTCCT
TCCAATTATTTATATGCCTTTACTAGAGCGAGCACCTCATTTTTTACAAA
TTTCGATCTGAAGATAAACTCTCTTTTCCACCAAAGGTTGGTCTGGTTAC
CATGAATTCAGAACATGCGAAGGATCATCACGTAATGTCGATTGTGGATC
TGGAAAAGTCATCAAATTGCACGACTACTTCTGGGGACGAACCACAAAAT
CAGTATGTAAAGGTGGTATTGATTGGACCTGGAGCACCAGCTGTCGAGGT
GGTCATGGAAGAATCAGAAATAACTGTGATAACAGACGATCATGCAAATT
GGAAGCTAACAATAGCTGGATGAACGATGATCCATGTTGGGGAACACCAA
AATACGCCTGGGTCAAATACCGATGTTACCAAAGTCCTTATTAAGTGATA
TTTTCAAAGCAAATTAATATACAGCACTGTAGGCTATATTCCGCACAGAA
CATTCAACTCAATTGCACCTTACATTTCTATTTATACTGAAAGAAAGAAA
GAAATTTAAATGAAACACCAGTGAATTGTATTTTGTGTTTACTACAGTAG
TTCGGTAGTTTCTGAAGACACTCCTGTCTCAGTGACCCGGTGGAAGCTAA
GGAAAAAGTAAGATTTAACGGACTGATAAAAGGGGTGCCTGATTCCTACA
AATTGGTCTTACAATGAGCCTCATTTCTGACCTTTGATTTGGTTTGATGC
CCATTTTTCTTATCCCAACATGTTATACTCCCTTTTCGATCTTCACGTAC
CTTTTTACGAGTCATGANTGATTTGGTTTGATGCCCATTTTTCTTATCCC
AACATGTTATACTCCTTTTTCGATCTTCACATACCTTTTTACGAGTCATG
GGGAGAAATAAAATACAATAAATGCCTGCCGTTTCTTCTGTTCTTATAAA
TAACTCCACAAAATCAAGCAAAATCCAATACTCTCCAGGTGCCTAATAAA
CGTGGGGGTTGGAAATTTTTCAGAATTTTAATAAACGTTGGGGTCTTAAT
AAGCGTGGGGGTTGGAAATTTGATAATTTGTCGAAAATACCCCTAATTAT
TGGAAGCTAGAAGATGCACATATTTTGAGTGTAACACAACAATAAGTCAT
ATTTTGTCACACCTACAAGTATAATTATATTTGTTGAAATTGCTTAACTT
GTTAATTTTTCAGCTGTTAGGTCAACGTTATTGGAAGCCTGCAGAAAATA
CTTACTCTCTATTTCAAAAATAAGACGTGTCCAATGAAAAATGCTTGATA
AGAAATTTCTGAATTTTAGTAAACGGGGGGGTCCTAATAAGGTCAGTAGG
GGTTGGAAAATTTTCGAAAAATTAATAAGCGTGAAGGCACGTTTATTAGG
CACCTGAGAGTAGCTTGTTTTTTCATGATGTTGAAGATAAAGTGCAAAAT
CTAAACAGAAAAGCACAAATTAAAACTAGAGCCAGTCTTCCGGGATGAGA
TTAGAGATAAATATGACCGAGACAGGTACGACGAAAGCTTTTTAAATCTG
GTACCGCGAGTGAGGAAATTTAAGGGATTTTACCGACAAAGAGGAAAATT
TCGGGATTTTTTGTGAAAACCTGGTACGGCCGTCGCCGTACCTACCGTAC
CCGGTGCGTCGTACCTGAATATACCATTTTCGATAACAAAAACCTAGTGT
GGTAAAGTCCTCTTTCGTTGAAAACAAATTAGAATAGAGAACTAGAGCGT
CTCACTGTAATAGTGATTTAAAGAAAGCCTTGTTTGCAATTCAAATATCT
GAATTTAAAAATTTAAAACTCATAAAATTGGTCTGCAGGCAAAGAATTGG
CACTGTTGGAAATCTCTTGACTTCACCATTTTTGTTTGAAAGAAAATGGT
TTTAAGCTATGGCTTTTCAATATTGTTTTCTCACTTCACCCTCTGTAATG
AGATCCAATCCCAATCCAATTCTCTTCGACGTACCGCAATGGATGATTAT
ACACTGTGATGTCAGCTCGCCATTTATTATATTATCATTCTATTCCCCCG
AATTCTATAGCCTTTTCATAAACGAGTGCAGCCTCGTGTTGAAACCATCA
CCAAGGTGATAAAATACCTTGAGTTTTCAACTTTATAAATAGAGTAAACG
TCTTATGAACCCTTCTAACCGATCAATCCCCATAGCAATATTTTGAAAAC
GAGGTAAGCGTTGTTCGTGACACGTATTTTATGAAAATGTCGACAGTATT
GGCCCCAAAAACGTATAGGTTGTTATTAAAATGAGGATTGGGCTCTTCCA
GAAAATGTCCGTACATGGGGGGGGGGTGAGAATATAATGTCCGGGGGTAG
TGAAATGTTACACCTGCTGTCCTGGGTCAAAAGTCACAATGTCCGGGAGA
AAATTTCCAAAAAATGTTATATCCCCCCCATATTAAATTTTTTTCTGGAA
GAGCCCATTCTGAACTTTAAATTAGCCAGAATTAGACGATTTTTGTTTAT
TTCGAAAGAATGATGGTTATTCTTGAGGGTGAGTATGTTTTTGATGATTT
CAGAAAGATTTACGCCTAATGCCTTTCAGAAAACGCAGATGCATTTGCGA
CTTTAGAGGATGAGTAAAAGATATAGCATCTTAAAGGTCAACCAGAACCA
GCATTGATAAAACCAAAAATTCTAAATATGAGTAACAGAAAAAATCTTGG
AATTCTGTTCCTGCTAACTTGACTTAATAGTTTATAACAAAAAATTATAT
ATATAAATATTTGCTGAATCAGCAAAAACGACATATTCTGTCATATTTTT
TGCAAAATATAGGAGAAACATAACTTTAAATCTTAATATTTTTTTTGTTT
CCGTTAGGGTGTATTTCCAAAATTTCCGCAACATATTCCATATATGAATG
GAACCATTTTCGAAAGAAATTGGTTTTCAGAAACTTAATTAAAACGTCGT
TAATTCAAAATTATTGTTTTCAAAATTTCTATCGAAAATCTTGCAATATT
TTATACAAAACATAAATTTTACATCCATCGGGTCATAAATTTATGGGAAA
ACAAAAATATGTTATTACCACTGGGCTTCTTAATTTAATTTTAAATTTTC
AAACCTACGTTATTGGGGCCCCAAACCTGCGTTCTCACAACCAGGGGTAT
ACTGTAAAAGTTTCTTTAAACAACTTTATCCCCAAAACCCTCTCAATCAC
ATTTGCAAACTATGGTAAAAATTTTATATTCGTAGTTTAAAGGCCTGTTT
TTAAGCAAACGAAAAATATTGTTGAAGTTGAAGATTTTGAAAAAGAACTT
TCGAGAAATAAAATTAAGATGTTAAAGTTTTTCATGCAGCAAAAATTTTT
GTAAAACATCTTTTCCTCTAGATTCGAAAAAAACTTTAAATCTGACTGAC
GTTTTGGTGGCTACATACTGTAAAGTTTGATTCTTTAAAGGATTGGATGG
ATAAATTGGATCCTTAAATTGGATCATACGCGATAACTTTACTGTAGAGT
GTTTGTCATAGGTTAAAATTCAGAGAAAGCAAAAATGAGGTCCTCTTGTA
ATTTTCACTACTGGCTAAATTTCAAACTTGCAACCTGGAAAAGAAGATGT
TGCTGTAGAGAGTGGTTTCGACCTATAGCCAGCTGGAGGACCGGTAAAAT
GGTTTTTCTTAAGTCGGCGTGGTAAAAGATTAATCTTATTCGAAAAGGGA
TTGATTTAACATCTCATTGTTTAGTTGCATGGTTAGATTTTATTTTTAGT
AAGTAAAACAATCATTAGGATTCGAATTATCGCAAACTCCACTTCCCTTT
GTTTTTTTTTATCATCTCAATTTTCTAATGAAAGCGGCATACAATTTCGG
GGAAAATTGTTCTAAACCGAAACCTAACTCAAACACAATCCACTTATAAT
TTCCTAATGCAAGATTGCAATAGAAATCACAAATTAACACTATATTGTTT
GTCATAACACAACAAAACTGAAAATAAAACAACTTTGATCTTGAACGCTA
AAACGAACGGAATTGGATTTGCAGAATCTCCAAAAAAGCTAATTCTCAAG
TCCTTGGATTATTGATTCTTGGTGCTAATGGAAAGGATCTTTAGTTTACA
GTTGAAACACTTTGTCACTTAGAAATAATTGTTTTGAAATCGGATATTAC
ATTTATCGGCTTTGTGATCGGGAAGCATTTTTTTAAGGGAATCTGTTGTT
TATCATGTTACCAATGATTGAAACAGGTGGACTTGTGAATTACTATATAT
CATGAATTCGGTTAAAATTGATTATTGCTTTTTGAAACATTAAGAAGAAG
CAAACACAGTGGTTTTAAAAAAGGTATGAAGATATTTTTTTGAGTTCTTT
CTGAATTTGGACGTTTCACTGGGTATAGGTATAGGTATGAGAAGAAAAAA
AGATTTATCTTGGTCTATGGTAACAAAACTATTGAAATTAAGTTAATTTT
TGAGCGCCGTAAATCATTGAAAGGTTACAGATTCTCACCGTGAAATTTAC
CCCAAGTGAATTTTCTTAATTTTTTCACTCCTTCAGTACTAGTGGAGACA
GAAATTTGAATATTTTTTCAAGGCAAAGAATTTTAGCTTGGATGGCAGTA
CTGAAAAAGTTAAACATTTATTTTATTTTTCCAATACAGATCCACTGACA
ATGAAAGTTTTCGTTTTGTTGGCCCTTCTTGGGGTTGCCTTGGCACAAGA
TGGTAAGTTACGTGTTAGAATTCCTTGTGTTTTTATGACAATGTCTTGTC
AATCAGAGGTGAAAGGTAAATATTAAAAAACAAGCTCTCCTCTGCTGCAC
TATATTACTATAGTTAGAGTTTAAGAAAATTTATATCTTGCCATGTAAAT
TAGTATAAAAAAGAACTAAACTAAATTATCGGGGCCGGCAAACGTAACTT
TTATTAATATTAGAATTGCAGCGGTTTGTCAAAAATAGGGGCATAATCGG
GGGCAAATTTCTCAAAATTGGCGCAAGATATATATGTGTAAAAATTTTGG
TAGGAAAGTAACAAAAAATTGTGAATATATGATCTTCGGTGCCTCCCAAA
AAGTTCGGCCGCTGGGGCGGTCAGTAAGATTCATCATAAACCGAAAAGAT
TATTTGAATCACTCAATTTTTTAGGATTTGCGATTTGCTTATAAGTTACA
TTTCTTATTAAGGGCTCTGACCATAGTGAATTTTTCATAATTGCCGTGTT
TGATATGTGTTTTCTGACTGATGTAACCAACAAAACTGTGGTATGTTATA
CATTTTCTGTTAGACAAACTATTCCTGAATCTGAAAATTCAAAAATTGCA
TTGAAAAAATTTGATGAAGAAGAAAATGAAGACTTTTGCGAGGATGAGTA
TTTCAACTTTGAAGAGCTTAGTTTCGGCGAAGAAAAAACATTTTGAATTT
TTTTTTGCAGTAGTTGGTGTATCTTTTACCAAACAACAAAAATTTTTGCG
GAAAATTTTTATAAATGCTTCTTTGTCTCGAAATCTTCAAAATAGTGGTT
TTTCATCAATTTTTCATCTGGATTTTGCTTAAAAAACAGTCATAACTTTT
AACACATCTTTTTAGAAATATTTTCCGCAAAATTTAAAATTGTTCAATTC
TTTGCGGACAGTGTAAAGAAACTTTGAAACAAAAAAGTTAATTACCCATT
AAAACTAAGCACTTTTTGTAAAAGACGGTGATGCAACATATTATTANNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNTTCTTTATTACTCTTAAGGGATTCGATTA
AAAAGCAATTTATAAAGGCAATTCTTTGTTAAAAGTGTTAAGAAACCTGA
AATATAACTTTTATGTTCAAATACGAAAATCAATTTTTTGACTACGGTCA
GAGCCCTTAAGGATCCGATTAGTATGAAGAATGTTGAAGTTAAAAAAACT
GGGTTGGAAGGCCTACACTGGTACTGAAATTTAGGTATTAGAATAATTCA
TTATCTTTGGGTATTTTTCACTAGATTGCCCAGCGTTCGTTAAGCAAGGA
TGTTTGAGCAGAGATGCAAATGTCTTTCATCAACAAGTTGCAAACAATCG
TGATGCTAGCAGCAATGTTTACACCGGCAAACTTTTGGACTGGCATAACT
TCAAACAATCCCTTGGCGAGTGAGTGCGATTTTCCGTTCTTGGACCAAAA
AAAGATGCTGACTTTTGTCAACAAGTGCAAGTCTTGTATTGCATCTTTTT
TATTACATAACGTTTTTAATCACCTAAATAGACATCTGGGGTGATATATA
AATTTCTGAATATTAATTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGATTAGGATGTGC
TTGTGCCAAGAAAGTCAAAGAACTCGGTGGTGTTGCTTTTGCCATGACAT
TCTGGGGAGAATGTTGGATGGCCACCGACAAAGCAGCTTATGAAGCTCAT
CTTATGAATCCTGCTGATCAATCAGGAAGTTGTATCGGTCATGACGGAAG
CAACTATGGGTCATGCGCTGAAGGACATGGACATTGCATGGCTGACGAAT
CTTCCGAATACGCTTACAGCTTTCCATCTGCTGCCCCACCAGGTAAGACA
ATGTCCTCCCTTTATACACTGTCTTTTCATTAGAACTTAGTTTATTAGAA
CAGTTAGGCTAAAATTAAGGGAAAAAAGGAAATCGTAAACATGGCCAGTC
TGAAGATTTATGTTTCCCGTGCATGCTCGAGTTATGGAGACTCCACTGTA
TAACTACTTTAGATCCGTAACGAAAAATTTCGCTAATACGAAGTTTTAAA
GAAATACACTGTAATTGCTATATGAGCCTCTTTCTACTTTTCAGCAATCG
ATGGAGGATTTGGAAACTGGAGTGAATGGACACAATGTTCAGCAAGCTGT
GGCGATTCTTTCCAAGAACGTGAACGAAGTTGCAACAACCCCGTCCCTAA
AAATGGCGGTGCTGACTGTCCAGAGGAAGAATTGACCGAAACAAGAAAGT
GCGACGTCCCAGCATGCCCAGGTATACTCTTCTTTCCTCTTGATGTAAAT
TATTCACATGAGAGGTTATTTCTTTGCTTTTATCCGCTCAACATATCAAT
CTTGATAAAACAAAGTATGTTTTTGAACTCTTTCAGATTTTGGTAAGATC
ACTTTCACAAGGATTTGTACTGAAAGACCAATTTGCTCATGCAAACACAG
TTTTCATTTAAACAATAGCAAGCTAAATCATTGCTAATTTTAATGTTCCA
AACTAAGCTTTATTTTAAAGCACATCTAGACGGCTATTTTAGATTTGGGC
TCCAACAATAAGATAAAGAAGCCTAAAACTAAAATCATTATCAATTTTTA
TAATTTGTTAAATTGTCTAGTCGACGGTAAATGGACAGAGTACAGTGAGT
TCAGTGAATGTTCAGCCTCGTGTGGAGGTGGATCACAAAAAAGAACACGA
TCTTGCACAAACCCTGCACCAGCACATGGTGGTAAAGAATGCGAAGGATC
TGATGAAGATGAACAAGAATGTGGAACTGATCCTTGCCCAGGTGCGTGGC
AATTAAATACTCGATCACAATACAATTGATATTGCTTCAGAATCTTCACC
GACAGCTCGGTCTTAGATCATGTTCGCACGTGGCGGTTCCGTTTCGCTCC
GAAACGAAATGAAGCCATTCTATTGGTTACATTCAAGTGTTACGTCACTT
CTAACCAATAGAATGGCTTCATTTCGTTTCGGAACGAAACGGGACCGCCA
CGTACGAACATGGTCTTAGGGATCTTTTTCTCAGAACTTCATCTCGGTAT
AAATATTTTGTGGTGTCTACACTCTAATGCATTATATCCTAAGGTTTTCT
GAAAATTTTGAAGGAGATATCATTTTGTGGATAACTATTTACGTTAAGAA
GAATTTACAGAAGTTTCTGATTTCGTTTATATATGTAAAGTATTCCAAAT
ACATTCTCTTGAACCATTGGTTTACACGTTTCCAAAAAACTTTCAGAAAA
ATCAGTCATTCTAATCAACCGAACTTGCATTTTCTCTAGTCGACGGCAAA
TGGACAGAGTACAGCGAGTTCGGTGAATGTTCAGCCTCGTGTGGAGGTGG
ATCACAAAAAAGAACACGATCTTGCANGGTAAATGGACAGAGTACAGTGA
GTTCGGTGAATGTTCAGCCTCGTGTGGAGGTGGATCACAAAAAAGAACAC
GATCTTGCACAAACCCTGCACCAGCACATGGTGGAAAAGAATGCGAAGGA
TCTGATGAAGATGAACAAGAATGTGGAACTGATCCTTGCCCAGGTGCGCC
TAGTCTACATTCCATGTCAAGTTGTTTTAAATGATGACCATTCCTGGACA
CTGAAATAATTCGTTGTCTTTATAGTCTTAGGTTTAACCTATTCCGAGAG
ATGGCTCGATAGGGCCAAGCTACAAATAATATGTCACTAACATATACAAA
AAAAGATATTTGCAGACAGTGTGGTCTTTCAGAAAAGATTCGCAGCAGAT
TGTGAAAGAGCAAGGGAAGAATGGGAAATTTTAAGTGTTTTAAAATTTCT
TATTTTTCTTCTAAAGTTGATGGTAAATGGGGAGCTTATGGAGCTTTCAG
CCAATGTAACAAGCCTTGTGGAGGTGGAAGCCAATCACGATCGAGATCTT
GCAACAACCCTGCACCAAAGTATGGAGGAAAAGCTTGTGTTGGATCAGCC
ACTGACAGCCGAGCCTGTAACACACAAAACTGCCCAGGTGTCATATTTTG
CTTTTATAATCTCTTATCTCTTTCAACAATATTTTCATTTGCTTTTCGAA
TTTTCAGATTGATTATGAGTTTCTATCATGAGTAGTTTTTCCAGACACGA
TAGATGCACAGCTTACAAAAGCAGTAGTTATTACAAAGGCTTTAAAATAC
CAGTTTTTAAATTCTTGATTGCAGTTTATACTTTACCGTGCAAACTAAAA
ATATACACAAAAGAGGAACGGTCTCTTGTATTATCTCGAAGAGACTTATA
TTGCTGATGAAAAAATTTCTTACTTTCCTTTTATAGTCGATGGTAAATGG
GGAGCTTATGGCGCTTTCAGCCAATGTAACAAGCCTTGTGGAGGTGGAAG
CCAATCACGATCGAGATCTTGCAATAACCCCGCACCAAAATACGGAGGAA
AAGCTTGTGTTGGATCAGCCACTGACAGCCGAGCTTGTAACACTCAAAAC
TGCCCAGGTGCCATATTTTGCTTTTATAATCTCATGGGATATTATTTCCA
ACAATATTTTCCTTTTTTTTTGCTTTTCGAATTTTCAGATTGATTTTGAG
TTTCTACCATGAGTAGTTTTTCCAGACACGATATCAAGTTTCAGCTTACA
TAAGCAGTGGTCAAAGATATTTCACCAAGGCTTAACATCCAAGTTTTTAA
ATTCTTCATTGCAGTTTATACTTGATCGTGCGAGCCAAAAATATATAAGT
ACAAGATAGGAAGAAGGCCCCCCAGCGGTTTGCGTGATGGCGTGATTGGG
ACTTTTTTCTTGCGTGATGGCGTGATTAGAGATTTATTTTGGCGTGATGG
CGTGGTCAAGATTTTGGCGTGATGCGTGATAGGGCAAACATTTGAGACGT
GATGCGTGATTTGGGCTATTTTTCACTATTTTTTGCGTGATGACAAATTT
TAGCGATTTTCGTGATGCGTGATGGAGAATTTTTTTGCGTGATGGCGTGA
TTAGGGGTGCCGCTGGGGGGCCTCAGGAAGGGTCTGTTGTATAATCTTGA
AAGGACTTATATTGCTAATGGAAAAATTTCTTATTTTCCTTCTAAAGTTG
ATGGTAAATGGGGAGCTTATGGAGCTTTCAGCCAATGTAACAAGCCTTGT
GGAGGTGGAAGCCAATCACGATCCAGATCTTGCAACAACCCTGCACCAAA
ATACGGAGGAAAAGCTTGTGTTGGATCAGCAACTGACAGCCGAGCCTGTA
ACACACAAAATTGTCCAAGTAAGTTTAGATTAACCATCAAAAGGAACTTA
GCCGTTTTTCTTTAACAGATATGCTTTGTAAGAACTTGATCGCGACTTAC
GGTGTTAAGCAATGAATTAAGTTCAAACTGGTTTCTTTGGTTCTTAAAAA
CAAATTAACCTAGAGATTATGCTAACTGGGACAATGCGTAATAGTTTTAA
ACCAGTATGAGAGAGATGGCTAAAATGTTAAAGGTTTATCTAGGAATAGG
GTACATTTGCATAAAAATTATCCAAAGCTCAATAATCTTTTGAATATTTA
CCGATATTTAGATTGTACCTACTTTTAAGCACTTTTCCCGTTCTTTTAGT
CAACGGAAAATGGGGATCATGGAGCGGATATGGATCTTGTAACAGAAAAT
GTGGAACAGGAAGTCAAAAACGAACCAGATCTTGTAACAATCCTTCACCA
AAATACAATGGTGCTTCATGTTCAGGTTCATCTCAACAAAGCAGAAACTG
CAACACTCACTCTTGTAAGTTACACTTTTTATCATTTTAGATTACCTTTT
AAACTTACTTCGCCAGCAATTCCACAAACCCCTCCTATCTCTTTGGCTTG
GAGGTTTCTTCCTTAGATTGTAATTTATCCATAGTATAGTTTCCAAGAGA
AAGGATCCTTTTGATCAACTTACCAGATAAACTAGCAGCAAAGAACTAAA
AAAAGTTTAAAGATACAAATATGAAGGCCATTTCACGGTCGAAATGACAC
ATGGGTGATCAAGACCGATTACGGCTCTGTAACGGCCCACTGTTGGTTAG
ATACAAAAATATCCAACATTAGACCGTAGTTATAGAGTGCAGCGATCCTG
ATTGCCCATGATTCCTTGCAACTATCAAATGACCTACAAAAGTCACTGAC
ATGCTGCAGACATGCCAAATCAAGGACTCTTTGATGTTAACAAAGTTTTC
AAAGGGAGGATAACGAGGATAATGAATTCACGGGTTCCGGGGGAGATGGT
TCTTTCGGATCCTAGTGATTTTGATACATCAGAGTGAGCCTAAAATCCGA
CACTTTCTTTCTCAGTCGGTAGATCAGTTGCGCAGTATGTAATTCGAAAG
TCGTAAGTTTGAATTGCACTTCAGTTCAGCAGTTTGCTTTCAAACTGAGG
TCAATTCGCATATATACGTGTTGGCACTAAATGGTCTTGATGCAGTGTAG
CAAGTGAATATGGAGAATTTGAAATTCAATTTTTCCTATTTCAGGTTATT
CTGGATATATGGAATTCAAAACATGCGAAGGATCGTCACGTAATGTCGAT
TGTGGATCTGGAAAAATCATCAAATTGCACGACTACTTCTGGGGACGAAC
TTCCAAGTCATACTGCCGAAGTGGTATTGATTGGTTCTGGAGCACAAGCT
GCCGAGGTGGTCATGGACGTATTGCCAACAGATGTCACAACAGACAATCA
TGCAAATTGGAAGCTAACAATAGCTGGATGAACGATGACCCATGTTTTGG
AACACCAAAATACGCCTGGGTCAAATACCGGTGTTACCAAAGTCCTTATT
AAGTGATATTTTCATAACATATACAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041151XLOC_041151Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065682-exon-scaffold_442-1575043694:79758..79927TCONS_00065682-exon-scaffold_442-1575043694:79758..79927Clytia hemisphaericaexon
TCONS_00065682-exon-scaffold_442-1575043694:70758..70907TCONS_00065682-exon-scaffold_442-1575043694:70758..70907Clytia hemisphaericaexon
TCONS_00065682-exon-scaffold_442-1575043694:69985..70005TCONS_00065682-exon-scaffold_442-1575043694:69985..70005Clytia hemisphaericaexon
TCONS_00065682-exon-scaffold_442-1575043694:69541..69711TCONS_00065682-exon-scaffold_442-1575043694:69541..69711Clytia hemisphaericaexon
TCONS_00065682-exon-scaffold_442-1575043694:69071..69241TCONS_00065682-exon-scaffold_442-1575043694:69071..69241Clytia hemisphaericaexon
TCONS_00065682-exon-scaffold_442-1575043694:68310..68480TCONS_00065682-exon-scaffold_442-1575043694:68310..68480Clytia hemisphaericaexon
TCONS_00065682-exon-scaffold_442-1575043694:67814..67978TCONS_00065682-exon-scaffold_442-1575043694:67814..67978Clytia hemisphaericaexon
TCONS_00065682-exon-scaffold_442-1575043694:66751..67083TCONS_00065682-exon-scaffold_442-1575043694:66751..67083Clytia hemisphaericaexon
TCONS_00065682-exon-scaffold_442-1510915933:79758..79927TCONS_00065682-exon-scaffold_442-1510915933:79758..79927Clytia hemisphaericaexon
TCONS_00065682-exon-scaffold_442-1510915933:70758..70907TCONS_00065682-exon-scaffold_442-1510915933:70758..70907Clytia hemisphaericaexon
TCONS_00065682-exon-scaffold_442-1510915933:69985..70005TCONS_00065682-exon-scaffold_442-1510915933:69985..70005Clytia hemisphaericaexon
TCONS_00065682-exon-scaffold_442-1510915933:69541..69711TCONS_00065682-exon-scaffold_442-1510915933:69541..69711Clytia hemisphaericaexon
TCONS_00065682-exon-scaffold_442-1510915933:69071..69241TCONS_00065682-exon-scaffold_442-1510915933:69071..69241Clytia hemisphaericaexon
TCONS_00065682-exon-scaffold_442-1510915933:68310..68480TCONS_00065682-exon-scaffold_442-1510915933:68310..68480Clytia hemisphaericaexon
TCONS_00065682-exon-scaffold_442-1510915933:67814..67978TCONS_00065682-exon-scaffold_442-1510915933:67814..67978Clytia hemisphaericaexon
TCONS_00065682-exon-scaffold_442-1510915933:66751..67083TCONS_00065682-exon-scaffold_442-1510915933:66751..67083Clytia hemisphaericaexon
TCONS_00065682-exon-scaffold_442-1491911889:79758..79927TCONS_00065682-exon-scaffold_442-1491911889:79758..79927Clytia hemisphaericaexon
TCONS_00065682-exon-scaffold_442-1491911889:70758..70907TCONS_00065682-exon-scaffold_442-1491911889:70758..70907Clytia hemisphaericaexon
TCONS_00065682-exon-scaffold_442-1491911889:69985..70005TCONS_00065682-exon-scaffold_442-1491911889:69985..70005Clytia hemisphaericaexon
TCONS_00065682-exon-scaffold_442-1491911889:69541..69711TCONS_00065682-exon-scaffold_442-1491911889:69541..69711Clytia hemisphaericaexon
TCONS_00065682-exon-scaffold_442-1491911889:69071..69241TCONS_00065682-exon-scaffold_442-1491911889:69071..69241Clytia hemisphaericaexon
TCONS_00065682-exon-scaffold_442-1491911889:68310..68480TCONS_00065682-exon-scaffold_442-1491911889:68310..68480Clytia hemisphaericaexon
TCONS_00065682-exon-scaffold_442-1491911889:67814..67978TCONS_00065682-exon-scaffold_442-1491911889:67814..67978Clytia hemisphaericaexon
TCONS_00065682-exon-scaffold_442-1491911889:66751..67083TCONS_00065682-exon-scaffold_442-1491911889:66751..67083Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_442supercontigscaffold_442:66751..79927 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.279474	0	0	0	0	0	0	0.122239	0	0	0	0.0612815	0	0	0.34535	0.61769	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
[Close]
BLAST of TCONS_00065682 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2)

HSP 1 Score: 270.781 bits (691), Expect = 1.003e-78
Identity = 149/339 (43.95%), Postives = 212/339 (62.54%), Query Frame = 2 
Query:    5 GKWTEYSEFSECSASCGGGSQKRTRSCTNPAPAHGGKECEGSDEDEQECGTDPCPVDGKWTEYSEFSECSASCGGGSQKRTRSCTNPAPAHGGKECEGSDEDEQECGTDPCPVDGKWGAYGAFSQCNKPCXXXXXXXXXXCNNPAPKYGGKACVGSATDSRACNTQNCPVDGKWGAYGAFSQCNKPCXXXXXXXXXXCNNPAPKYGGKACVGSATDSRACNTQNCPVDGKWGAYGAFSQCNKPCXXXXXXXXXXCNNPAPKYGGKACVGSATDSRACNTQNCPINGKWGSWSGYGSCNRKCGTGSQKRTRSCNNPSPKYNGASCSGSSQQSRNCNTHSC 1021
            G ++++S +  CS +CG G QKR+R C  P PA+GGK C+GSD + + C   PCPVDG W+E+S + EC+ SCG G+Q RTR+C NP+  HGG+ CEG+  +   C   PCPV G W A+  +  C++ CG G+Q+R+R CNNP P +GG  C G+ T  + CN +NCP+ GKW  + ++S C+  CGGG++ R+R C++P P+YGG+ C GS   S  CN+  CP  G W  +  +  C++ C GG   R R+C+NP P  GG+AC G  +  + CNT  CP++G WGSW  +  C+  CG G + R R C++P P   G  C G + Q   CN  +C
Sbjct: 4530 GGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQAC 4868

HSP 2 Score: 226.483 bits (576), Expect = 1.200e-63
Identity = 126/284 (44.37%), Postives = 185/284 (65.14%), Query Frame = 2 
Query:  170 VDGKWTEYSEFSECSASCGGGSQKRTRSCTNPAPAHGGKECEGSDEDEQECGTDPCPVDGKWGAYGAFSQCNKPCXXXXXXXXXXCNNPAPKYGGKACVGSATDSRACNTQNCPVDGKWGAYGAFSQCNKPCXXXXXXXXXXCNNPAPKYGGKACVGSATDSRACNTQNCPVDGKWGAYGAFSQCNKPCXXXXXXXXXXCNNPAPKYGGKACVGSATDSRACNTQNCPINGKWGSWSGYGSCNRKCGTGSQKRTRSCNNPSPKYNGASCSGSSQQSRNCNTHSC 1021
            V G ++++S +  CS +CG G QKR+R C  P PA+GGK C+GSD + + C   PCPVDG W  +  + +C + CG G+Q+R+R+CNNP+ ++GG+ C G+A +   CN + CPV G W A+  +  C++ CG G+Q+R+R CNNP P +GG  C G+ T  + CN +NCP+ GKW  + ++S C+  CGGG++ R+R C++P P+YGG+ C GS   S  CN+  CP +G W  WSG+G+C+R C  G  +R R+C+NP P   G +C G   Q + CNT  C
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMC 4811

HSP 3 Score: 218.779 bits (556), Expect = 5.359e-61
Identity = 127/284 (44.72%), Postives = 176/284 (61.97%), Query Frame = 2 
Query:    2 DGKWTEYSEFSECSASCGGGSQKRTRSCTNPAPAHGGKECEGSDEDEQECGTDPCPVDGKWTEYSEFSECSASCGGGSQKRTRSCTNPAPAHGGKECEGSDEDEQECGTDPCPVDGKWGAYGAFSQCNKPCXXXXXXXXXXCNNPAPKYGGKACVGSATDSRACNTQNCPVDGKWGAYGAFSQCNKPCXXXXXXXXXXCNNPAPKYGGKACVGSATDSRACNTQNCPVDGKWGAYGAFSQCNKPCXXXXXXXXXXCNNPAPKYGGKACVGSATDSRACNTQNCP 853
            DG W+E+S + EC+ SCG G+Q RTR+C NP+  HGG+ CEG+  +   C   PCPV G W+ +  +  CS SCG G+Q R R C NP PA GG  C+G++   Q C    CP+ GKW  + ++S C+  CGGG++ R+R C++P P+YGG+ C GS   S  CN+  CP  G W  +  +  C++ C GG   R R+C+NP P  GG+AC G  +  + CNT  CPVDG WG++ ++SQC+  CGGG ++R R C++P P  GG+ C G  T    CN Q CP
Sbjct: 4586 DGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869
The following BLAST results are available for this feature:
BLAST of TCONS_00065682 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HMCN11.003e-7843.95Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2[more]
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