TCONS_00065689 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065689
Unique NameTCONS_00065689
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length428

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065689 ID=TCONS_00065689|Name=TCONS_00065689|organism=Clytia hemisphaerica|type=transcript|length=428bp
TTGGTCTGGTTACCATGAATTCAGAACATGCGAAGGATCATCACGTAATG
TCGATTGTGGATCTGGAAAAGTCATCAAATTGCACGACTACTTCTGGGGA
CGAACCACAAAATCAGTATGTAAAGGTGGTATTGATTGGACCTGGAGCAC
CAGCTGTCGAGGTGGTCATGGAAGAATCAGAAATAACTGTGATAACAGAC
GATCATGCAAATTGGAAGCTAACAATAGCTGGATGAACGATGATCCATGT
TGGGGAACACCAAAATACGCCTGGGTCAAATACCGATGTTACCAAAGTCC
TTATTAAGTGatattttcaaagcaaattAATATACAGCACTGTAGGCTAT
ATTCCGCACAGAACATTCAACTCAATTGCACCTTACATTTCTATTTAtac
tgaaagaaagaaagaaatttaaatgAAA
Run BLAST on NCBI

protein sequence of TCONS_00065689-protein

>TCONS_00065689-protein ID=TCONS_00065689-protein|Name=TCONS_00065689-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
WSGYHEFRTCEGSSRNVDCGSGKVIKLHDYFWGRTTKSVCKGGIDWTWST
SCRGGHGRIRNNCDNRRSCKLEANNSWMNDDPCWGTPKYAWVKYRCYQSP
Y
Run BLAST on NCBI

transcript from alignment at scaffold_442:78013..78440

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065689 ID=TCONS_00065689|Name=TCONS_00065689|organism=Clytia hemisphaerica|type=transcript|length=428bp|location=Sequence derived from alignment at scaffold_442:78013..78440 (Clytia hemisphaerica)
TTTcatttaaatttctttctttctttcagtaTAAATAGAAATGTAAGGTG
CAATTGAGTTGAATGTTCTGTGCGGAATATAGCCTACAGTGCTGTATATT
aatttgctttgaaaatatCACTTAATAAGGACTTTGGTAACATCGGTATT
TGACCCAGGCGTATTTTGGTGTTCCCCAACATGGATCATCGTTCATCCAG
CTATTGTTAGCTTCCAATTTGCATGATCGTCTGTTATCACAGTTATTTCT
GATTCTTCCATGACCACCTCGACAGCTGGTGCTCCAGGTCCAATCAATAC
CACCTTTACATACTGATTTTGTGGTTCGTCCCCAGAAGTAGTCGTGCAAT
TTGATGACTTTTCCAGATCCACAATCGACATTACGTGATGATCCTTCGCA
TGTTCTGAATTCATGGTAACCAGACCAA

Coding sequence (CDS) from alignment at scaffold_442:78013..78440

>TCONS_00065689 ID=TCONS_00065689|Name=TCONS_00065689|organism=Clytia hemisphaerica|type=CDS|length=306bp|location=Sequence derived from alignment at scaffold_442:78013..78440 (Clytia hemisphaerica)
TTAATAAGGACTTTGGTAACATCGGTATTTGACCCAGGCGTATTTTGGTG
TTCCCCAACATGGATCATCGTTCATCCAGCTATTGTTAGCTTCCAATTTG
CATGATCGTCTGTTATCACAGTTATTTCTGATTCTTCCATGACCACCTCG
ACAGCTGGTGCTCCAGGTCCAATCAATACCACCTTTACATACTGATTTTG
TGGTTCGTCCCCAGAAGTAGTCGTGCAATTTGATGACTTTTCCAGATCCA
CAATCGACATTACGTGATGATCCTTCGCATGTTCTGAATTCATGGTAACC
AGACCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041155XLOC_041155Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065689-proteinTCONS_00065689-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065689-exon-scaffold_442-1491911889:78013..78440TCONS_00065689-exon-scaffold_442-1491911889:78013..78440Clytia hemisphaericaexon
TCONS_00065689-exon-scaffold_442-1510915933:78013..78440TCONS_00065689-exon-scaffold_442-1510915933:78013..78440Clytia hemisphaericaexon
TCONS_00065689-exon-scaffold_442-1575043694:78013..78440TCONS_00065689-exon-scaffold_442-1575043694:78013..78440Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_442supercontigscaffold_442:78013..78440 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.157974	0	0	0	0.172634	0	0	0	0	0	0	240.934	277.463	0.55193	1.57948	33.5649	46.6474	629.334	731.616	240.473	277.839	58.1697	70.5615	32.7319	42.9758	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000922Lectin_gal-bd_dom
Vocabulary: Molecular Function
TermDefinition
GO:0030246carbohydrate binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0030246 carbohydrate binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065689 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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